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(-) Description

Title :  X-RAY STRUCTURE OF MELON NECROTIC SPOT VIRUS
 
Authors :  Y. Wada, T. Tsukihara, T. Omura
Date :  05 Oct 07  (Deposition) - 07 Oct 08  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.81
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (60x)
Keywords :  Plant Virus, Coat Protein, B-Annulus, Tombusvirus, Carmovirus, Fungal Vector, Mnsv, Capsid Protein, Icosahedral Virus, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wada, H. Tanaka, E. Yamashita, C. Kubo, T. Ichiki-Uehara, E. Nakazono-Nagaoka, T. Omura, T. Tsukihara
X-Ray Structure Of Melon Necrotic Spot Virus
Acta Crystallogr. , Sect. F V. 64 8 2008
PubMed-ID: 18097092  |  Reference-DOI: 10.1107/S1744309107066481

(-) Compounds

Molecule 1 - COAT PROTEIN
    Chains: A, B, C
    Fragment: RESIDUES 60-390
    Organism Common: MNSV
    Organism Scientific: MELON NECROTIC SPOT VIRUS
    Organism Taxid: 11987
    Other Details: PLANT VIRUS

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (60x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2UNX1Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (1, 60)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2UNX60Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:174 , ASP A:179 , ASP B:146 , GLN B:260BINDING SITE FOR RESIDUE CA B 1
2AC2SOFTWAREASP B:176 , ASP B:179 , ASP C:146 , ASP C:218 , GLN C:260BINDING SITE FOR RESIDUE CA B 2
3AC3SOFTWAREASP B:174 , ASP B:179 , ASP C:146 , GLN C:260BINDING SITE FOR RESIDUE CA B 3
4AC4SOFTWAREASP A:146 , GLN A:260 , ASP C:174 , ASP C:179BINDING SITE FOR RESIDUE CA A 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZAH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ZAH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZAH)

(-) PROSITE Motifs  (1, 3)

Asymmetric Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ICOSAH_VIR_COAT_SPS00555 Plant viruses icosahedral capsid proteins 'S' region signature.CAPSD_MNSV157-182
 
 		  3A:157-182
B:157-182
C:157-182
Biological Unit 1 (1, 180)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ICOSAH_VIR_COAT_SPS00555 Plant viruses icosahedral capsid proteins 'S' region signature.CAPSD_MNSV157-182
 
 		  180A:157-182
B:157-182
C:157-182

(-) Exons   (0, 0)

(no "Exon" information available for 2ZAH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:296
 aligned with CAPSD_MNSV | P19899 from UniProtKB/Swiss-Prot  Length:390

    Alignment length:296
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384      
           CAPSD_MNSV    95 SVKIVHREFIASVLPSSDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGSTSTGRVSLLWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGSTAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSLSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNLTSSGASALTFTLNSTGVPNSSDSSFSVGTVVALTRVRMTITRCSPETAYLA 390
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee......ee.hhh.....ee...........hhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhh...eeeee.....eeeee......ee.......hhhhh...eeeeeee........eeeeeeeeeee.........eeeeee.........eeee....hhh.eeee..eeee.....eeeeeeeeee......ee....eeeeeeeeeeee..eeeeeeeeee..........eee.......eeeeeeeeehhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------ICOSAH_VIR_COAT_S         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zah A  95 SVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384      


Chain A from PDB  Type:PROTEIN  Length:296
 aligned with Q3LHM1_MNSV | Q3LHM1 from UniProtKB/TrEMBL  Length:390

    Alignment length:296
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384      
          Q3LHM1_MNSV    95 SVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee......ee.hhh.....ee...........hhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhh...eeeee.....eeeee......ee.......hhhhh...eeeeeee........eeeeeeeeeee.........eeeeee.........eeee....hhh.eeee..eeee.....eeeeeeeeee......ee....eeeeeeeeeeee..eeeeeeeeee..........eee.......eeeeeeeeehhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zah A  95 SVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384      


Chain B from PDB  Type:PROTEIN  Length:296
 aligned with CAPSD_MNSV | P19899 from UniProtKB/Swiss-Prot  Length:390

    Alignment length:296
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384      
           CAPSD_MNSV    95 SVKIVHREFIASVLPSSDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGSTSTGRVSLLWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGSTAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSLSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNLTSSGASALTFTLNSTGVPNSSDSSFSVGTVVALTRVRMTITRCSPETAYLA 390
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee......ee.hhh.....ee...........hhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhh...eeeee.....eeeee......ee.......hhhhh...eeeeeee........eeeeeeeeeee.........eeeeee.........eeee....hhh.eeee..eeee.....eeeeeeeeeee.....ee....eeeeeeeeeee..eeeeeeeeeee..........eee.......eeeeeeeeehhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------ICOSAH_VIR_COAT_S         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zah B  95 SVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384      


Chain B from PDB  Type:PROTEIN  Length:296
 aligned with Q3LHM1_MNSV | Q3LHM1 from UniProtKB/TrEMBL  Length:390

    Alignment length:296
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384      
          Q3LHM1_MNSV    95 SVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee......ee.hhh.....ee...........hhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhh...eeeee.....eeeee......ee.......hhhhh...eeeeeee........eeeeeeeeeee.........eeeeee.........eeee....hhh.eeee..eeee.....eeeeeeeeeee.....ee....eeeeeeeeeee..eeeeeeeeeee..........eee.......eeeeeeeeehhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zah B  95 SVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384      


Chain C from PDB  Type:PROTEIN  Length:331
 aligned with CAPSD_MNSV | P19899 from UniProtKB/Swiss-Prot  Length:390

    Alignment length:331
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389 
           CAPSD_MNSV    60 NISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFIASVLPSSDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGSTSTGRVSLLWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGSTAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSLSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNLTSSGASALTFTLNSTGVPNSSDSSFSVGTVVALTRVRMTITRCSPETAYLA 390
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------Viral_coat-2zahC01 C:68-263                                                                                                                                                                         ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------Viral_coat-2zahC02 C:68-263                                                                                                                                                                         ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --------Viral_coat-2zahC03 C:68-263                                                                                                                                                                         ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
         Sec.struct. author ............................eee.....eeeeeeeeeeee......ee.hhh.....ee..........hhhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhhh..eeeee.....eeeee......ee.......hhhhh...eeeeeee........eeeeeeeeeee.........eeeeee.........eeee....hhh.eeee..eeee.....eeeeeeeeee......ee....eeeeeeeeeeee..eeeeeeeeee..........eee.......eeeeeeee.hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------ICOSAH_VIR_COAT_S         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zah C  60 NISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389 


Chain C from PDB  Type:PROTEIN  Length:331
 aligned with Q3LHM1_MNSV | Q3LHM1 from UniProtKB/TrEMBL  Length:390

    Alignment length:331
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389 
          Q3LHM1_MNSV    60 NISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------Viral_coat-2zahC01 C:68-263                                                                                                                                                                         ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------Viral_coat-2zahC02 C:68-263                                                                                                                                                                         ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --------Viral_coat-2zahC03 C:68-263                                                                                                                                                                         ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
         Sec.struct. author ............................eee.....eeeeeeeeeeee......ee.hhh.....ee..........hhhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhhh..eeeee.....eeeee......ee.......hhhhh...eeeeeee........eeeeeeeeeee.........eeeeee.........eeee....hhh.eeee..eeee.....eeeeeeeeee......ee....eeeeeeeeeeee..eeeeeeeeee..........eee.......eeeeeeee.hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zah C  60 NISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFIASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGSTSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGSTIKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVTSSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA 390
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZAH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZAH)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: Viral_ssRNA_CP (106)

(-) Gene Ontology  (5, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (CAPSD_MNSV | P19899)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0039617    T=3 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=3 symmetry. The T=3 capsid is composed of 12 pentameric and 20 hexameric capsomeres.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain A,B,C   (Q3LHM1_MNSV | Q3LHM1)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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  2zah
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  CAPSD_MNSV | P19899
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  Q3LHM1_MNSV | Q3LHM1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1opo 2tbv