2Z2G - JenaLib

Title :   NMR STRUCTURE OF THE IQ-MODIFIED DODECAMER CTC[IQ]GGCGCCATC

Authors :   F. Wang, C. E. Elmquist, J. S. Stover, C. J. Rizzo, M. P. Stone

Date :   22 May 07 (Deposition) - 02 Oct 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (10x)

Keywords :   Nmr Structure, Nar1Iq1, Rmd Calculations, Noesy, Cosy, Refinement, Iq, Adduct, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Wang, C. E. Elmquist, J. S. Stover, C. J. Rizzo, M. P. Stone
Dna Sequence Modulates The Conformation Of The Food Mutagen 2-Amino-3-Methylimidazo[4, 5-F]Quinoline In The Recognition Sequence Of The Nari Restriction Enzyme
Biochemistry V. 46 8498 2007
PubMed-ID: 17602664 | Reference-DOI: 10.1021/BI700361U
(for further references see the PDB file header)

Compounds

*Molecule 1 - DNA (5'- D(DCPDTPDCPDGPDGPDCPDGPDCPDCPDAPDTPDC)-3')*
	Chains	:	A
	Engineered	:	YES
	Other Details	:	THE UNMODIFIED OLIGODEOXYNUCLEOTIDE 5'- D(GATGGCGCCGAG)-3' WAS OBTAINED FROM THE MIDLAND CERTIFIED REAGENT COMPANY, AND HAD BEEN PURIFIED BY ANION EXCHANGE CHROMATOGRAPHY. THE IQ-ADDUCTED OLIGODEOXYNUCLEOTIDES 5'- D(CTCXGCGCCATC)-3' AND 5'-D(CTCGXCGCCATC)-3' WERE SYNTHESIZED AND PURIFIED AS DESCRIBED IN PAPER BY ELMQUIST, C. ERIC.[J. AM. CHEM. SOC., VOL. 126, NO. 36, 2004].
	Synthetic	:	YES

*Molecule 2 - DNA (5'- D(DGPDAPDTPDGPDGPDCPDGPDCPDCPDGPDAPDG)-3')*
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:12
                                           
                  2z2g A  1 CTCGGCGCCATC 12
                                    10

Chain B from PDB  Type:DNA  Length:12
                                           
                  2z2g B 13 GATGGCGCCGAG 24
                                    22

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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