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(-) Description

Title :  CRYSTAL STRUCTURE OF HYDROGENASE MATURATION PROTEIN HYPE
 
Authors :  Y. Shomura, Y. Higuchi
Date :  15 May 07  (Deposition) - 09 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Alpha-Beta Fold, Beta Barrel, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Shomura, H. Komori, N. Miyabe, M. Tomiyama, N. Shibata, Y. Higuchi
Crystal Structures Of Hydrogenase Maturation Protein Hype I The Apo And Atp-Bound Forms
J. Mol. Biol. V. 372 1045 2007
PubMed-ID: 17706667  |  Reference-DOI: 10.1016/J.JMB.2007.07.023

(-) Compounds

Molecule 1 - HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PPROEXHTB
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HYPE
    Organism Scientific: DESULFOVIBRIO VULGARIS SUBSP. VULGARIS
    Organism Taxid: 882
    Strain: HILDENBOROUGH

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2Z1T)

(-) Sites  (0, 0)

(no "Site" information available for 2Z1T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z1T)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asp A:59 -Pro A:60
2Asp A:152 -Pro A:153
3Leu A:309 -Gly A:310
4Glu A:333 -Gly A:334

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Z1T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Z1T)

(-) Exons   (0, 0)

(no "Exon" information available for 2Z1T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
 aligned with Q72F88_DESVH | Q72F88 from UniProtKB/TrEMBL  Length:341

    Alignment length:321
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340 
         Q72F88_DESVH    21 ISDLFLRHFDNPILGTLNDAARLDLTGPLAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSMLGARPRYLSCGFILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPRGACDKMFINTTGIGEILVDPAPSGDRARPGDAILISGSMGDHGLTILSQRQGLNFAADVCSDSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRNGCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSVKSVGELGAARAGQVVMETALGGHRLLSMLEGEQLPRIC 341
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------AIRS-2z1tA01 A:37-128                                                                       --------------------------------AIRS_C-2z1tA02 A:161-312                                                                                                                                ----------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh..................eeeeeeee.....ee..eehhhhhhhhhhhhhhh..eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.......eeeeeeeeeee..............eeeee....hhhhhhhhhhh...............hhhhhhhhhhhh....eee....hhhhhhhhhhhhhhh.eeeee.hhh..hhhhhhhhhhh.............eeeee..hhhhhhhhhhh..hhhhheeeeeee............eeee.....eeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2z1t A  21 ISDLFLRHFDNPILGTLNDAARLDLTGPLAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSMLGARPRYLSCGFILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPRGACDKMFINTTGIGEILVDPAPSGDRARPGDAILISGSMGDHGLTILSQRQGLNFAADVCSDSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRNGCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSVKSVGELGAARAGQVVMETALGGHRLLSMLEGEQLPRIC 341
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Z1T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Z1T)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: AIRS] (11)
(-)
Clan: no clan defined [family: AIRS_C] (13)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q72F88_DESVH | Q72F88)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 2z1t)
 
  Cis Peptide Bonds
    Asp A:152 - Pro A:153   [ RasMol ]  
    Asp A:59 - Pro A:60   [ RasMol ]  
    Glu A:333 - Gly A:334   [ RasMol ]  
    Leu A:309 - Gly A:310   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q72F88_DESVH | Q72F88: 2z1u

(-) Related Entries Specified in the PDB File

2z1u