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(-) Description

Title :  CRYSTAL STRUCTURE OF GDP-D-MANNOSE DEHYDRATASE FROM AQUIFEX AEOLICUS VF5
 
Authors :  H. Niwa, S. Kuramitsu, S. Yokoyama, Riken Structural Genomics/Prot Initiative (Rsgi)
Date :  09 May 07  (Deposition) - 13 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Short-Chain Dehydrogenase/Reductase, Lyase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Niwa, S. Kuramitsu, S. Yokoyama
Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GDP-D-MANNOSE DEHYDRATASE
    Chains: A, B, C, D
    EC Number: 4.2.1.47
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RFBD
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 224324
    Strain: VF5

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , GLN A:14 , ASP A:15 , ASP A:34 , ARG A:35 , ARG A:36 , MET A:59 , ASP A:60 , LEU A:61 , LEU A:82 , ALA A:83 , ALA A:84 , SER A:86 , SER A:126 , THR A:127 , TYR A:151 , LYS A:155 , LEU A:178 , ASN A:180 , HIS A:181 , ARG A:186 , HOH A:1011 , HOH A:1030 , HOH A:1042 , HOH A:1067 , HOH A:1104 , HOH A:1111 , HOH A:1119BINDING SITE FOR RESIDUE NDP A 1001
2AC2SOFTWAREVAL A:88 , GLU A:129 , ASN A:180 , GLU A:189 , VAL A:191 , LYS A:194 , LEU A:212 , GLY A:213 , ASN A:214 , ALA A:217 , ARG A:219 , VAL A:253 , PHE A:295 , ARG A:297 , GLU A:300 , HOH A:1017 , HOH A:1032 , HOH A:1035 , HOH A:1083 , HOH A:1087 , HOH A:1095BINDING SITE FOR RESIDUE GDP A 1002
3AC3SOFTWAREGLY D:13 , GLN D:14 , ASP D:15 , ASP D:34 , ARG D:35 , ARG D:36 , MET D:59 , ASP D:60 , LEU D:61 , LEU D:82 , ALA D:83 , ALA D:84 , SER D:86 , ALA D:125 , SER D:126 , THR D:127 , TYR D:151 , LYS D:155 , LEU D:178 , ASN D:180 , HIS D:181 , ARG D:186 , HOH D:1119 , HOH D:1132 , HOH D:1138 , HOH D:1185 , HOH D:1200 , HOH D:1239BINDING SITE FOR RESIDUE NDP D 1101
4AC4SOFTWAREVAL D:88 , GLU D:129 , ASN D:180 , GLU D:189 , VAL D:191 , LYS D:194 , LEU D:212 , GLY D:213 , ASN D:214 , ALA D:217 , ARG D:219 , VAL D:253 , PHE D:295 , ARG D:297 , GLU D:300 , HOH D:1117 , HOH D:1123 , HOH D:1131 , HOH D:1184 , HOH D:1194BINDING SITE FOR RESIDUE GDP D 1102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z1M)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:137 -Pro A:138
2Ile B:137 -Pro B:138
3Ile C:137 -Pro C:138
4Ile D:137 -Pro D:138

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Z1M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Z1M)

(-) Exons   (0, 0)

(no "Exon" information available for 2Z1M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:338
 aligned with O67175_AQUAE | O67175 from UniProtKB/TrEMBL  Length:345

    Alignment length:338
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332        
         O67175_AQUAE     3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340
               SCOP domains d2z1ma_ A: automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 2z1mA01 A:3-186,A:222-249,A:301-321 NAD(P)-binding Rossmann-like Domain                                                                                                                 2z1mA02                            2z1mA01                     2z1mA02 A:187-221,A:250-300,A:322-340              2z1mA01              2z1mA02             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeee........hhhhhhh.....eee......hhhhhhhhhhhhh..eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhhhh.....eee.....ee..eehhhhhhhhhhhhh......eee.....eehhhhhhhhhhhh...eeee.hhhhheeee.....eeeee.hhhh...........hhhhhhhhh.....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2z1m A   3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332        


Chain B from PDB  Type:PROTEIN  Length:332
 aligned with O67175_AQUAE | O67175 from UniProtKB/TrEMBL  Length:345

    Alignment length:342
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343  
         O67175_AQUAE     4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDREVSV 345
               SCOP domains d2z1mb_ B: automated matches                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2z1mB01 B:4-186,B:222-249,B:298       -321 NAD(P)-binding Rossmann-like Domain                                                                                                         2z1mB02                            2z1mB01                     2z1mB02 B:187-221,B:250-297,B:322-345           2   z1mB01              2z1mB02                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh..eeeeee-------hhhhhhh......eeee.....hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhh.................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhhhh.....eee.....ee..eehhhhhhhhhhhhhh.....eee.....eehhhhhhhhhhhh...eeee.hhhh.eeee.....eeeee.......---......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z1m B   4 KRALITGIRGQDGAYLAKLLLEKGYEVYGAD-------SWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRP---DILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDREVSV 345
                                    13        23        33|       43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293    |  303       313       323       333       343  
                                                         34      42                                                                                                                                                                                                                                                             298 302                                           


Chain C from PDB  Type:PROTEIN  Length:336
 aligned with O67175_AQUAE | O67175 from UniProtKB/TrEMBL  Length:345

    Alignment length:343
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342   
         O67175_AQUAE     3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDREVSV 345
               SCOP domains d2z1mc_ C: automated matches                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2z1mC01 C:3-186,C:222-249,C:301-       321 NAD(P)-binding Rossmann-like Domain                                                                                                          2z1mC02                            2z1mC01                     2z1mC02 C:187-221,C:250-300,C:322-345              2z1mC01              2z1mC02                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeeee-------hhhhhhh......eeee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhh.................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhhhh.....eee.....ee..eehhhhhhhhhhhhh......eee.....eehhhhhhhhhhhhh..eeee.hhhh.eeee.....eeeee................hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2z1m C   3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGAD-------SWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDREVSV 345
                                    12        22        32 |      42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342   
                                                          34      42                                                                                                                                                                                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:338
 aligned with O67175_AQUAE | O67175 from UniProtKB/TrEMBL  Length:345

    Alignment length:338
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332        
         O67175_AQUAE     3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340
               SCOP domains d2z1md_ D: automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 2z1mD01 D:3-186,D:222-249,D:301-321 NAD(P)-binding Rossmann-like Domain                                                                                                                 2z1mD02                            2z1mD01                     2z1mD02 D:187-221,D:250-300,D:322-340              2z1mD01              2z1mD02             CATH domains
           Pfam domains (1) ---Epimerase-2z1mD01 D:6-246                                                                                                                                                                                                                        ---------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---Epimerase-2z1mD02 D:6-246                                                                                                                                                                                                                        ---------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---Epimerase-2z1mD03 D:6-246                                                                                                                                                                                                                        ---------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---Epimerase-2z1mD04 D:6-246                                                                                                                                                                                                                        ---------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeee........hhhhhhh.....eee......hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhhhh.....eee.....ee..eehhhhhhhhhhhhh......eee.....eehhhhhhhhhhhhh..eeee.hhhh.eeee.....eeeee.hhhh...........hhhhhhhhh.....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2z1m D   3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)
(-)
Aquifex aeolicus vf5. Organism_taxid: 224324. Strain: vf5. (5)
1a2z1mB01B:4-186,B:222-249,B:298-321
1b2z1mC01C:3-186,C:222-249,C:301-321
1c2z1mA01A:3-186,A:222-249,A:301-321
1d2z1mD01D:3-186,D:222-249,D:301-321
(-)
Architecture: Alpha-Beta Complex (3881)
(-)
Topology: UDP-galactose 4-epimerase; domain 1 (99)
(-)
Homologous Superfamily: UDP-galactose 4-epimerase, domain 1 (99)
(-)
Aquifex aeolicus vf5. Organism_taxid: 224324. Strain: vf5. (2)
2a2z1mC02C:187-221,C:250-300,C:322-345
2b2z1mB02B:187-221,B:250-297,B:322-345
2c2z1mA02A:187-221,A:250-300,A:322-340
2d2z1mD02D:187-221,D:250-300,D:322-340

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (O67175_AQUAE | O67175)
molecular function
    GO:0008446    GDP-mannose 4,6-dehydratase activity    Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O.
    GO:0070401    NADP+ binding    Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0019673    GDP-mannose metabolic process    The chemical reactions and pathways involving GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate.

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  2z1m
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  O67175_AQUAE | O67175
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  4.2.1.47
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O67175_AQUAE | O67175: 2z95

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2Z1M)