2Z17 - JenaLib

Title :   CRYSTAL STURCTURE OF PDZ DOMAIN FROM HUMAN PLECKSTRIN HOMOLOGY, SEC7

Authors :   S. Kishishita, A. Nishino, K. Murayama, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   08 May 07 (Deposition) - 13 May 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Pdz Domain, Coiled Coil, Cytoplasm, Membrane, Polymorphism, Protein Binding, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Kishishita, A. Nishino, K. Murayama, T. Terada, M. Shirouzu, S. Yokoyama
Crystal Sturcture Of Pdz Domain From Human Pleckstrin Homology, Sec7
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - PLECKSTRIN HOMOLOGY SEC7 AND COILED-COIL DOMAINS- BINDING PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	CELL-FREE PROTEIN SYNTHESIS
	Expression System Plasmid	:	PK060110-70
	Expression System Vector Type	:	PLASMID
	Fragment	:	PDZ DOMAIN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CYTOHESIN-BINDING PROTEIN HE, CYBR, CYTOHESIN BINDER AND REGULATOR, CYTOHESIN-INTERACTING PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

Asymmetric Unit (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051287	Q	83	E	CYTIP_HUMAN	Polymorphism	2229345	A	Q	24	E

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051287	Q	83	E	CYTIP_HUMAN	Polymorphism	2229345	A	Q	24	E

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:94
 aligned with CYTIP_HUMAN | O60759 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:94
                                    79        89        99       109       119       129       139       149       159    
          CYTIP_HUMAN    70 FSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 163
               SCOP domains d2z17a_ A: automated matches                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------PDZ-2z17A01 A:18-104                                                                    Pfam domains
         Sec.struct. author .......eeeee........eeeee..............eeeeee...hhhhhhh........ee..ee....hhhhhhhhhhhh..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------E-------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: A:18-104 UniProt: 77-166                                                      PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2z17 A  11 FSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
                                    20        30        40        50        60        70        80        90       100

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Chain A (CYTIP_HUMAN | O60759)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0030155	regulation of cell adhesion	Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix.
cellular component
	GO:0005938	cell cortex	The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005769	early endosome	A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.

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