Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF RNA-BINDING DOMAIN OF NS1 FROM INFLUENZA A VIRUS A/CROW/KYOTO/T1/2004(H5N1)
 
Authors :  S. Saijo, S. Kishishita, T. Kamo-Uchikubo, T. Terada, M. Shirouzu, H. I S. Yokoyama, Riken Structural Genomics/Proteomics Initiative
Date :  07 May 07  (Deposition) - 13 May 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Avian Influenza, H5N1, Rna-Binding, Ns1, Viral Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Saijo, S. Kishishita, T. Kamo-Uchikubo, T. Terada, M. Shirouzu, H. Ito, T. Ito, S. Yokoyama
Crystal Structure Of Rna-Binding Domain Of Ns1 From Influenza A Virus A/Crow/Kyoto/T1/2004(H5N1)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NONSTRUCTURAL PROTEIN 1
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemCELL-FREE PROTEIN SYNTHESIS
    Expression System PlasmidPX070216-21
    Expression System Vector TypePLASMID
    FragmentRNA-BINDING DOMAIN
    GeneNS1
    Organism ScientificINFLUENZA A VIRUS
    Organism Taxid11320
    StrainA/CROW/KYOTO/T1/2004(H5N1)

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1GLY4Mod. Amino AcidGLYCINE
2SIN2Ligand/IonSUCCINIC ACID
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1GLY2Mod. Amino AcidGLYCINE
2SIN2Ligand/IonSUCCINIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GLY2Mod. Amino AcidGLYCINE
2SIN-1Ligand/IonSUCCINIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER D:42 , ARG D:46BINDING SITE FOR RESIDUE GLY D 73
2AC2SOFTWAREASP C:39 , SER C:42 , ARG C:46BINDING SITE FOR RESIDUE GLY C 73
3AC3SOFTWAREALA A:60 , GLN A:63 , ARG A:67BINDING SITE FOR RESIDUE GLY A 73
4AC4SOFTWARELYS A:20 , LEU A:36 , ARG A:37 , GLN A:40BINDING SITE FOR RESIDUE GLY A 74
5AC5SOFTWAREASP A:12 , TRP A:16 , ARG A:19 , ASP A:39 , SER A:42 , LEU A:43 , ARG A:46BINDING SITE FOR RESIDUE SIN A 75
6AC6SOFTWAREARG A:35 , ASP B:12 , ARG B:19 , ASP B:39 , SER B:42 , ARG B:46BINDING SITE FOR RESIDUE SIN B 73

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z0A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Z0A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Z0A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Z0A)

(-) Exons   (0, 0)

(no "Exon" information available for 2Z0A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:74
 aligned with Q5H7I4_9INFA | Q5H7I4 from UniProtKB/TrEMBL  Length:225

    Alignment length:74
                                    10        20        30        40        50        60        70    
          Q5H7I4_9INFA    1 MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEPD 74
               SCOP domains d2z0aa_ A: automated matches                                               SCOP domains
               CATH domains 2z0aA00 A:1-72  [code=1.10.287.10, no name defined]                     -- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  2z0a A  1 MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEGG 74
                                    10        20        30        40        50        60        70    

Chain A from PDB  Type:PROTEIN  Length:74
 aligned with Q5H7J4_9INFA | Q5H7J4 from UniProtKB/TrEMBL  Length:225

    Alignment length:74
                                    10        20        30        40        50        60        70    
          Q5H7J4_9INFA    1 MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEPD 74
               SCOP domains d2z0aa_ A: automated matches                                               SCOP domains
               CATH domains 2z0aA00 A:1-72  [code=1.10.287.10, no name defined]                     -- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  2z0a A  1 MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEGG 74
                                    10        20        30        40        50        60        70    

Chain B from PDB  Type:PROTEIN  Length:71
 aligned with Q5H7I4_9INFA | Q5H7I4 from UniProtKB/TrEMBL  Length:225

    Alignment length:71
                                    11        21        31        41        51        61        71 
          Q5H7I4_9INFA    2 DPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEE 72
               SCOP domains d2z0ab_ B: automated matches                                            SCOP domains
               CATH domains 2z0aB00 B:2-72  [code=1.10.287.10, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  2z0a B  2 DPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEE 72
                                    11        21        31        41        51        61        71 

Chain B from PDB  Type:PROTEIN  Length:71
 aligned with Q5H7J4_9INFA | Q5H7J4 from UniProtKB/TrEMBL  Length:225

    Alignment length:71
                                    11        21        31        41        51        61        71 
          Q5H7J4_9INFA    2 DPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEE 72
               SCOP domains d2z0ab_ B: automated matches                                            SCOP domains
               CATH domains 2z0aB00 B:2-72  [code=1.10.287.10, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  2z0a B  2 DPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEE 72
                                    11        21        31        41        51        61        71 

Chain C from PDB  Type:PROTEIN  Length:73
 aligned with Q5H7I4_9INFA | Q5H7I4 from UniProtKB/TrEMBL  Length:225

    Alignment length:73
                             1                                                                       
                             |       9        19        29        39        49        59        69   
          Q5H7I4_9INFA    - -MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEE 72
               SCOP domains d2z0ac_ C: automated matches                                              SCOP domains
               CATH domains 2z0aC00 C:0-71  [code=1.10.287.10, no name defined]                     - CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  2z0a C  0 GMDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEG 73
                                     9        19        29        39        49        59        69 ||
                                                                                                  71|
                                                                                                   73

Chain C from PDB  Type:PROTEIN  Length:73
 aligned with Q5H7J4_9INFA | Q5H7J4 from UniProtKB/TrEMBL  Length:225

    Alignment length:73
                             1                                                                       
                             |       9        19        29        39        49        59        69   
          Q5H7J4_9INFA    - -MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEE 72
               SCOP domains d2z0ac_ C: automated matches                                              SCOP domains
               CATH domains 2z0aC00 C:0-71  [code=1.10.287.10, no name defined]                     - CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  2z0a C  0 GMDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEG 73
                                     9        19        29        39        49        59        69 ||
                                                                                                  71|
                                                                                                   73

Chain D from PDB  Type:PROTEIN  Length:73
 aligned with Q5H7I4_9INFA | Q5H7I4 from UniProtKB/TrEMBL  Length:225

    Alignment length:73
                                    10        20        30        40        50        60        70   
          Q5H7I4_9INFA    1 MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEP 73
               SCOP domains d2z0ad_ D: automated matches                                              SCOP domains
               CATH domains 2z0aD00 D:1-72  [code=1.10.287.10, no name defined]                     - CATH domains
           Pfam domains (1) Flu_NS1-2z0aD01 D:1-72                                                  - Pfam domains (1)
           Pfam domains (2) Flu_NS1-2z0aD02 D:1-72                                                  - Pfam domains (2)
           Pfam domains (3) Flu_NS1-2z0aD03 D:1-72                                                  - Pfam domains (3)
           Pfam domains (4) Flu_NS1-2z0aD04 D:1-72                                                  - Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  2z0a D  1 MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEG 73
                                    10        20        30        40        50        60        70   

Chain D from PDB  Type:PROTEIN  Length:73
 aligned with Q5H7J4_9INFA | Q5H7J4 from UniProtKB/TrEMBL  Length:225

    Alignment length:73
                                    10        20        30        40        50        60        70   
          Q5H7J4_9INFA    1 MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEP 73
               SCOP domains d2z0ad_ D: automated matches                                              SCOP domains
               CATH domains 2z0aD00 D:1-72  [code=1.10.287.10, no name defined]                     - CATH domains
           Pfam domains (1) Flu_NS1-2z0aD01 D:1-72                                                  - Pfam domains (1)
           Pfam domains (2) Flu_NS1-2z0aD02 D:1-72                                                  - Pfam domains (2)
           Pfam domains (3) Flu_NS1-2z0aD03 D:1-72                                                  - Pfam domains (3)
           Pfam domains (4) Flu_NS1-2z0aD04 D:1-72                                                  - Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  2z0a D  1 MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEG 73
                                    10        20        30        40        50        60        70   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit

(-) Pfam Domains  (1, 4)

Asymmetric Unit

(-) Gene Ontology  (11, 22)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q5H7I4_9INFA | Q5H7I4)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0039580    suppression by virus of host PKR activity    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity. Activation of PKR involves dsRNA binding followed by autophosphorylation. Phosphorylated PKR can then phosphorylate downstream targets such as the translation initiation factor eIF2 to inhibit protein synthesis. Viruses encode a number of mechanisms to inhibit the host antiviral response via PKR, including direct interaction with PKR, promoting degradation of PKR or altering the subcellular location of PKR.
    GO:0039540    suppression by virus of host RIG-I activity    Any process in which a virus stops, prevents, or reduces the activity of RIG-1 (also known as DDX58). The cytoplasmic pattern recognition RIG-I recognizes viral RNA synthesized during active viral replication and signals to protect the host against viral infection, for example by inducing the expression of antiviral cytokines.
    GO:0039657    suppression by virus of host gene expression    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
    GO:0039503    suppression by virus of host innate immune response    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
    GO:0039524    suppression by virus of host mRNA processing    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of mRNA processing in the host cell. mRNA processing is the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
    GO:0039502    suppression by virus of host type I interferon-mediated signaling pathway    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of type I interferon-mediated signaling in the host organism. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

Chain A,B,C,D   (Q5H7J4_9INFA | Q5H7J4)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0039580    suppression by virus of host PKR activity    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity. Activation of PKR involves dsRNA binding followed by autophosphorylation. Phosphorylated PKR can then phosphorylate downstream targets such as the translation initiation factor eIF2 to inhibit protein synthesis. Viruses encode a number of mechanisms to inhibit the host antiviral response via PKR, including direct interaction with PKR, promoting degradation of PKR or altering the subcellular location of PKR.
    GO:0039540    suppression by virus of host RIG-I activity    Any process in which a virus stops, prevents, or reduces the activity of RIG-1 (also known as DDX58). The cytoplasmic pattern recognition RIG-I recognizes viral RNA synthesized during active viral replication and signals to protect the host against viral infection, for example by inducing the expression of antiviral cytokines.
    GO:0039657    suppression by virus of host gene expression    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
    GO:0039503    suppression by virus of host innate immune response    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
    GO:0039524    suppression by virus of host mRNA processing    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of mRNA processing in the host cell. mRNA processing is the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
    GO:0039502    suppression by virus of host type I interferon-mediated signaling pathway    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of type I interferon-mediated signaling in the host organism. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GLY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SIN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2z0a)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2z0a
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q5H7I4_9INFA | Q5H7I4
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  Q5H7J4_9INFA | Q5H7J4
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q5H7I4_9INFA | Q5H7I4
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q5H7J4_9INFA | Q5H7J4
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2Z0A)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2Z0A)