2Z09 - JenaLib

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Description

Title :   CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM THERMUS THERMOPHILUS HB8

Authors :   H. Iino, S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   07 May 07 (Deposition) - 13 Nov 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Uncharacterized Conserved Protein, Structural Genomics, Unknown Function, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Iino, S. Yokoyama, S. Kuramitsu
Crystal Structure Of Uncharacterized Conserved Protein From Thermus Thermophilus Hb8
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - UNIVERSAL STRESS PROTEIN FAMILY
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-11A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 3)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	ACP	1	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	ACP	4	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ACP A:2001 , HOH A:3079 , HOH A:3080 , HOH A:3081	BINDING SITE FOR RESIDUE MG A 3001
2	AC2	SOFTWARE	HOH A:3082 , HOH A:3084 , HOH A:3086	BINDING SITE FOR RESIDUE MG A 3002
3	AC3	SOFTWARE	ALA A:8 , TYR A:9 , ASP A:10 , VAL A:36 , HIS A:37 , ALA A:38 , PRO A:87 , MET A:105 , GLY A:106 , ARG A:108 , GLY A:109 , LEU A:110 , GLY A:111 , ALA A:112 , GLY A:119 , SER A:120 , GLN A:121 , SER A:122 , ARG A:124 , MG A:3001 , HOH A:3079 , HOH A:3080 , HOH A:3081 , HOH A:3083 , HOH A:3084 , HOH A:3085 , HOH A:3086	BINDING SITE FOR RESIDUE ACP A 2001

SS Bonds (0, 0)

(no "SS Bond" information available for 2Z09)

Cis Peptide Bonds (0, 0)

(no "Cis Peptide Bond" information available for 2Z09)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 2Z09)

PROSITE Motifs (0, 0)

(no "PROSITE Motif" information available for 2Z09)

Exons (0, 0)

(no "Exon" information available for 2Z09)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:124
 aligned with Q5SJV7_THET8 | Q5SJV7 from UniProtKB/TrEMBL  Length:137

    Alignment length:137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       
         Q5SJV7_THET8     1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137
               SCOP domains d2z09a_ A: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Usp-2z09A01 A:1-137                                                                                                                       Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee..-------------hhhhhhhhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhhh...eeeee............hhhhhhhhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2z09 A   1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEP-------------LRRRLERAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137
                                    10        20        30        40|        -    |   60        70        80        90       100       110       120       130       
                                                                   41            55

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Adenine nucleotide alpha hydrolase-like (440)

Superfamily: Adenine nucleotide alpha hydrolases-like (110)

Family: Universal stress protein-like (10)

Protein domain: automated matches (3)

Thermus thermophilus [TaxId: 274] (2)

d2z09a_

CATH Domains (0, 0)

(no "CATH Domain" information available for 2Z09)

Pfam Domains (1, 1)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HUP (230)

Family: Usp (9)

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (2)

Usp-2z09A01

A:1-137

Gene Ontology (3, 3)

Asymmetric Unit(hide GO term definitions)

Chain A (Q5SJV7_THET8 | Q5SJV7)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006950	response to stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
	Q5SJV7_THET8 \| Q5SJV7	:	1wjg 2z08 2z3v

Related Entries Specified in the PDB File

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