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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM PYROCOCCUS HORIKOSHII
 
Authors :  M. Kanagawa, S. Kuramitsu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  06 May 07  (Deposition) - 06 Nov 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sheet/Helix/Sheet/Sheet/Helix, Hypothetical Protein, Structural Genomics, Unknown Function, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kanagawa, S. Kuramitsu, S. Yokoyama
Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PH0107
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 53953

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric/Biological Unit (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2YZI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YZI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YZI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YZI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YZI)

(-) Exons   (0, 0)

(no "Exon" information available for 2YZI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with O57847_PYRHO | O57847 from UniProtKB/TrEMBL  Length:139

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
         O57847_PYRHO     4 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETA 135
               SCOP domains d2yzia1 A:4-135 Uncharacterized protein PH0107                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhh......ee....hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhh.........hhhhh......eee...hhhhhhhhhhhhh..eeeeee..eeeeeeehhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yzi A   4 mDmKAPIKVYmTKKLLGVKPSTSVQEASRLmmEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERImTRNLITANVNTPLGEVLRKmAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETA 135
                            | |     13|       23        33||      43        53        63        73     |  83        93     | 103       113       123       133  
                            | |      14-MSE              34-MSE                                       79-MSE              99-MSE                                
                            4-MSE                         35-MSE                                                                                                
                              6-MSE                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:136
 aligned with O57847_PYRHO | O57847 from UniProtKB/TrEMBL  Length:139

    Alignment length:136
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      
         O57847_PYRHO     4 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETAISAE 139
               SCOP domains d2yzib_ B: automated matches                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------CBS-2yziB01 B:75-129                                   ---------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------CBS-2yziB02 B:75-129                                   ---------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------CBS-2yziB03 B:75-129                                   ---------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------CBS-2yziB04 B:75-129                                   ---------- Pfam domains (4)
         Sec.struct. author .....hhhhh......ee....hhhhhhhhhhhh...eeeee.....eeeeeehhhhhhhh.........hhhhh......eee...hhhhhhhhhhhhh..eeeeee..eeeeeeehhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yzi B   4 mDmKAPIKVYmTKKLLGVKPSTSVQEASRLmmEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERImTRNLITANVNTPLGEVLRKmAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETAISAE 139
                            | |     13|       23        33||      43        53        63        73     |  83        93     | 103       113       123       133      
                            4-MSE    14-MSE              34-MSE                                       79-MSE              99-MSE                                    
                              6-MSE                       35-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YZI)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: CBS] (51)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2YZI)

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