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(-) Description

Title :  CRYSTAL STURCTURE OF HUMAN SPRY DOMAIN
 
Authors :  S. Kishishita, T. Uchikubo-Kamo, K. Murayama, T. Terada, L. Chen, Z. Q. Fu, J. Chrzas, M. Shirouzu, B. C. Wang, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  30 Apr 07  (Deposition) - 06 May 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (1x)
Keywords :  Spry Domain, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kishishita, T. Uchikubo-Kamo, K. Murayama, T. Terada, L. Chen, Z. Q. Fu, J. Chrzas, M. Shirouzu, B. C. Wang, S. Yokoyama
Crystal Sturcture Of Human Spry Domain
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SPRY DOMAIN-CONTAINING PROTEIN 3
    Chains: A
    Engineered: YES
    Expression System: CELL-FREE PROTEIN SYNTHESIS
    Expression System Plasmid: PK050905-07
    Expression System Vector Type: PLASMID
    Fragment: SPRY DOMAIN
    Gene: SPRYD3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

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  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:160
 aligned with SPRY3_HUMAN | Q8NCJ5 from UniProtKB/Swiss-Prot  Length:442

    Alignment length:160
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203
          SPRY3_HUMAN    44 ERFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDGLFPAVGMHSLGEEVRLHLNAEL 203
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------SPRY-2yyoA01 A:38-164                                                                                                          - Pfam domains
         Sec.struct. author .eee.eeee..eeee.......eeee..........eeeeeeeee......eeeee................eeee.....ee.................eeeeee.hhhhh...eeeeeee..eeeeeeee.......eeeeee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yyo A   6 SGFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTImPmSPDGLFPAVGmHSLGEEVRLHLNAEL 165
                                    15        25        35        45        55        65        75        85        95       105       115       125       135 | |   145    |  155       165
                                                                                                                                                             137-MSE      150-MSE           
                                                                                                                                                               139-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YYO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YYO)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: SPRY] (6)

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