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(-) Description

Title :  SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 656-688) OF HUMAN ZINC FINGER PROTEIN 95 HOMOLOG
 
Authors :  M. Takahashi, K. Kuwasako, K. Tsuda, W. Tanabe, T. Harada, S. Watanabe, N. Tochio, Y. Muto, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  03 Apr 07  (Deposition) - 09 Oct 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zf-C2H2, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Takahashi, K. Kuwasako, K. Tsuda, W. Tanabe, T. Harada, S. Watanabe, N. Tochio, Y. Muto, T. Kigawa, S. Yokoyama
Solution Structure Of The C2H2 Type Zinc Finger (Region 656-688) Of Human Zinc Finger Protein 95 Homolog
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER PROTEIN 95 HOMOLOG
    ChainsA
    EngineeredYES
    Expression System PlasmidP061225-40
    Expression System Vector TypePLASMID
    FragmentZF-C2H2
    GeneZFP95, KIAA1015
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL-FREE PROTEIN SYNTHESIS
    SynonymZFP-95

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:15 , GLU A:17 , CYS A:18 , HIS A:31 , HIS A:35BINDING SITE FOR RESIDUE ZN A 181

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YSO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YSO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YSO)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_FINGER_C2H2_1PS00028 Zinc finger C2H2 type domain signature.ZKSC5_HUMAN348-368
376-396
404-424
432-452
551-571
579-599
607-627
635-655
663-683
719-739
775-795
803-823
  2-
-
-
-
-
-
-
-
A:15-35
A:42-45
-
-

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000003941702ENSE00001517668chr7:99102573-99102783211ZKSC5_HUMAN-00--
1.3cENST000003941703cENSE00001375021chr7:99103628-99104081454ZKSC5_HUMAN1-1381380--
1.4ENST000003941704ENSE00001385326chr7:99110076-99110214139ZKSC5_HUMAN139-185470--
1.6ENST000003941706ENSE00000708266chr7:99117450-9911753283ZKSC5_HUMAN185-212280--
1.7ENST000003941707ENSE00001102972chr7:99117792-99117927136ZKSC5_HUMAN213-258460--
1.8ENST000003941708ENSE00001734863chr7:99123436-99124041606ZKSC5_HUMAN258-4602030--
1.9cENST000003941709cENSE00001828654chr7:99128731-991314452715ZKSC5_HUMAN460-8393801A:1-46 (gaps)149

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:46
 aligned with ZKSC5_HUMAN | Q9Y2L8 from UniProtKB/Swiss-Prot  Length:839

    Alignment length:149
                                   592       602       612       622       632       642       652       662       672       682       692       702       712       722         
          ZKSC5_HUMAN   583 GKSYNQRVHLTQHQRVHTGEKPYTCPLCGKAFRVRSHLVQHQSVHSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNEKNGICEEAYSWNLTVIEDKKIELQEQPYQCDICGKAFGYSSD 731
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------------..-------------------------..--------------------------.....ee......ee.hhhhhhhhhhhhh.....-------------------------------------..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ZINC_FINGER_C2H2_-------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -----------------------------------ZINC_FINGER_C PROSITE
               Transcript 1 Exon 1.9c  PDB: A:1-46 (gaps) UniProt: 460-839 [INCOMPLETE]                                                                                           Transcript 1
                 2yso A   1 GSS---------------GS-------------------------SG--------------------------SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNS-------------------------------------GPSSG  46
                              |      -        |5         -         -     ||  -         -         -   |    14        24        34      |  -         -         -         -    |    
                              3               4|                         6|                          8                               41                                    42    
                                               5                          7                                                                                                      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YSO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YSO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YSO)

(-) Gene Ontology  (10, 10)

NMR Structure(hide GO term definitions)
Chain A   (ZKSC5_HUMAN | Q9Y2L8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZKSC5_HUMAN | Q9Y2L82em5 2emm 2emz 2en3 2eom 2eon 2eoo 2ytg

(-) Related Entries Specified in the PDB File

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