2YHF - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Biological Unit 9 (Jmol Viewer)

Title :   1.9 ANGSTROM CRYSTAL STRUCTURE OF CLEC5A

Authors :   A. A. Watson, A. A. Lebedev, G. M. Murshudov, A. A. Vagin, B. A. Hall, C. A. O'Callaghan

Date :   30 Apr 11 (Deposition) - 11 May 11 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: I  (1x)

Keywords :   Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. A. Watson, A. A. Lebedev, B. A. Hall, A. E. Fenton-May, A. A. Vagin, W. Dejnirattisai, J. Felce, J. Mongkolsapaya, A. S. Palma, Y. Liu, T. Feizi, G. R. Screaton, G. N. Murshudov, C. A. O'Callaghan
Structural Flexibility Of The Macrophage Dengue Virus Receptor Clec5A: Implications For Ligand Binding And Signaling.
J. Biol. Chem. V. 286 24208 2011
PubMed-ID: 21566123 | Reference-DOI: 10.1074/JBC.M111.226142

Molecule 1 - C-TYPE LECTIN DOMAIN FAMILY 5 MEMBER A
	Cell	:	PERIPHERAL BLOOD MONONUCLEAR CELLS
	Chains	:	A, B, C, D, E, F, G, H, I
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	PLYSS
	Expression System Vector	:	PGMT7
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 70-187
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	C-TYPE LECTIN SUPERFAMILY MEMBER 5, MYELOID DAP12-ASSOCIATING LECTIN 1, MDL-1, CL3

		1	2	3	4	5	6	7	8	9
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:									I

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2YHF)

(no "Site" information available for 2YHF)

Asymmetric Unit

No.	Residues
1	A:71	-	A:82
2	A:99	-	A:183
3	A:161	-	A:175
4	B:71	-	B:82
5	B:99	-	B:183
6	B:161	-	B:175
7	C:71	-	C:82
8	C:99	-	C:183
9	C:161	-	C:175
10	D:71	-	D:82
11	D:99	-	D:183
12	D:161	-	D:175
13	E:71	-	E:82
14	E:99	-	E:183
15	E:161	-	E:175
16	F:71	-	F:82
17	F:99	-	F:183
18	F:161	-	F:175
19	G:71	-	G:82
20	G:99	-	G:183
21	G:161	-	G:175
22	H:71	-	H:82
23	H:99	-	H:183
24	H:161	-	H:175
25	I:71	-	I:82
26	I:99	-	I:183
27	I:161	-	I:175

(no "Cis Peptide Bond" information available for 2YHF)

Asymmetric Unit (1, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	A/B/C/D/E/F/G/H/I	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	A	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	B	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	C	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	D	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	E	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	F	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 7 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	G	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 8 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	H	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 9 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_050110	R	141	H	CLC5A_HUMAN	Polymorphism	35942193	I	R	141	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 9)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	9	A:78-184 B:78-184 C:78-184 D:78-184 E:78-184 F:78-184 G:78-184 H:78-184 I:78-184

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	A:78-184 - - - - - - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	- B:78-184 - - - - - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	- - C:78-184 - - - - - -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	- - - D:78-184 - - - - -

Biological Unit 5 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	- - - - E:78-184 - - - -

Biological Unit 6 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	- - - - - F:78-184 - - -

Biological Unit 7 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	- - - - - - G:78-184 - -

Biological Unit 8 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	- - - - - - - H:78-184 -

Biological Unit 9 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC5A_HUMAN	78-184	1	- - - - - - - - I:78-184

(no "Exon" information available for 2YHF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhfa_ A: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhhh...eeeeeee......eee...ee....ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: A:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf A  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Chain B from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhfb_ B: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhh....eeeeeee......eee...ee....ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: B:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf B  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Chain C from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhfc_ C: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhhh...ee..eee......eee...ee....ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: C:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf C  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Chain D from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhfd_ D: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhh....eeeeeeeehhhheeee...ee....ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: D:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf D  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Chain E from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhfe_ E: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhh....eeeeeeee....eeee.........ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: E:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf E  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Chain F from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhff_ F: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhh....eeeeeeee....eeee.........ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: F:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf F  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Chain G from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhfg_ G: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhh....eeeeeeee....eeee.........ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: G:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf G  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Chain H from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhfh_ H: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhh....eeeeeeee....eeee.........ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: H:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf H  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Chain I from PDB  Type:PROTEIN  Length:118
 aligned with CLC5A_HUMAN | Q9NY25 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:118
                                    79        89        99       109       119       129       139       149       159       169       179        
          CLC5A_HUMAN    70 VCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
               SCOP domains d2yhfi_ I: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------Lectin_C-2yhfI01 I:88-185                                                                         -- Pfam domains (1)
           Pfam domains (2) ------------------Lectin_C-2yhfI02 I:88-185                                                                         -- Pfam domains (2)
           Pfam domains (3) ------------------Lectin_C-2yhfI03 I:88-185                                                                         -- Pfam domains (3)
           Pfam domains (4) ------------------Lectin_C-2yhfI04 I:88-185                                                                         -- Pfam domains (4)
           Pfam domains (5) ------------------Lectin_C-2yhfI05 I:88-185                                                                         -- Pfam domains (5)
           Pfam domains (6) ------------------Lectin_C-2yhfI06 I:88-185                                                                         -- Pfam domains (6)
           Pfam domains (7) ------------------Lectin_C-2yhfI07 I:88-185                                                                         -- Pfam domains (7)
           Pfam domains (8) ------------------Lectin_C-2yhfI08 I:88-185                                                                         -- Pfam domains (8)
           Pfam domains (9) ------------------Lectin_C-2yhfI09 I:88-185                                                                         -- Pfam domains (9)
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhh....eeeeeeee....eeee.........ee.......eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------H---------------------------------------------- SAPs(SNPs)
                    PROSITE --------C_TYPE_LECTIN_2  PDB: I:78-184 UniProt: 78-184                                                             --- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2yhf I  70 MCPKDWEFYQARCFFLSTSESSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFNCATIGLTKTFDAASCDISYRRICEKNA 187
                                    79        89        99       109       119       129       139       149       159       169       179

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: C-type lectin-like (322)

Superfamily: C-type lectin-like (322)

Family: automated matches (88)

Protein domain: automated matches (88)

Human (Homo sapiens) [TaxId: 9606] (60)

1a	d2yhfa_	A:
1b	d2yhfc_	C:
1c	d2yhfd_	D:
1d	d2yhfe_	E:
1e	d2yhff_	F:
1f	d2yhfg_	G:
1g	d2yhfh_	H:
1h	d2yhfi_	I:
1i	d2yhfb_	B:

(no "CATH Domain" information available for 2YHF)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: C_Lectin (98)

Family: Lectin_C (85)

Homo sapiens (Human) (39)

1a	Lectin_C-2yhfI01	I:88-185
1b	Lectin_C-2yhfI02	I:88-185
1c	Lectin_C-2yhfI03	I:88-185
1d	Lectin_C-2yhfI04	I:88-185
1e	Lectin_C-2yhfI05	I:88-185
1f	Lectin_C-2yhfI06	I:88-185
1g	Lectin_C-2yhfI07	I:88-185
1h	Lectin_C-2yhfI08	I:88-185
1i	Lectin_C-2yhfI09	I:88-185

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I (CLC5A_HUMAN | Q9NY25)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0001618	virus receptor activity	Combining with a virus component and mediating entry of the virus into the cell.
biological process
	GO:0006968	cellular defense response	A defense response that is mediated by cells.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0030099	myeloid cell differentiation	The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0033033	negative regulation of myeloid cell apoptotic process	Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptotic process.
	GO:0002076	osteoblast development	The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone.
	GO:0050715	positive regulation of cytokine secretion	Any process that activates or increases the frequency, rate or extent of the regulated release of cytokines from a cell.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2yhf)

	Sites
(no "Sites" information available for 2yhf)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2yhf)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]
		Biological Unit 7	[ Jena3D ]
		Biological Unit 8	[ Jena3D ]
		Biological Unit 9	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format \| Biol. Unit 6 PNG format \| Biol. Unit 7 PNG format \| Biol. Unit 8 PNG format \| Biol. Unit 9 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2yhf
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	CLC5A_HUMAN \| Q9NY25
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	CLC5A_HUMAN \| Q9NY25
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 2YHF)

(no "Related Entries Specified in the PDB File" available for 2YHF)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (27, 27)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 9)

PROSITE Motifs (1, 9)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 9)

CATH Domains (0, 0)

Pfam Domains (1, 9)

Gene Ontology (18, 18)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File