2YFO - JenaLib

Title :   GALACTOSIDASE DOMAIN OF ALPHA-GALACTOSIDASE-SUCROSE KINASE, AGASK, IN COMPLEX WITH GALACTOSE

Authors :   G. Sulzenbacher, L. Bruel, M. Tison-Cervera, A. Pujol, C. Nicoletti, J A. Galinier, D. Ropartz, M. Fons, F. Pompeo, T. Giardina

Date :   07 Apr 11 (Deposition) - 28 Sep 11 (Release) - 07 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.35

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Bruel, G. Sulzenbacher, M. Tison-Cervera, A. Pujol, C. Nicoletti, J. Perrier, A. Galinier, D. Ropartz, M. Fons, F. Pompeo, T. Giardina
Agask, A Bifunctional Enzyme From The Human Microbiome Coupling Galactosidase And Kinase Activities
J. Biol. Chem. V. 286 40814 2011
PubMed-ID: 21931163 | Reference-DOI: 10.1074/JBC.M111.286039

Compounds

Molecule 1 - ALPHA-GALACTOSIDASE-SUCROSE KINASE AGASK
	Chains	:	A
	EC Number	:	3.2.1.22
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	POPIN E
	Organism Scientific	:	RUMINOCOCCUS GNAVUS E1
	Organism Taxid	:	935582

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 35)

Asymmetric Unit (6, 35)

No.	Name	Count	Type	Full Name
1	GAL	1	Ligand/Ion	BETA-D-GALACTOSE
2	GLA	1	Ligand/Ion	ALPHA D-GALACTOSE
3	GOL	1	Ligand/Ion	GLYCEROL
4	NA	27	Ligand/Ion	SODIUM ION
5	PGE	4	Ligand/Ion	TRIETHYLENE GLYCOL
6	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (5, 32)

No.	Name	Count	Type	Full Name
1	GAL	4	Ligand/Ion	BETA-D-GALACTOSE
2	GLA	4	Ligand/Ion	ALPHA D-GALACTOSE
3	GOL	4	Ligand/Ion	GLYCEROL
4	NA	-1	Ligand/Ion	SODIUM ION
5	PGE	16	Ligand/Ion	TRIETHYLENE GLYCOL
6	PO4	4	Ligand/Ion	PHOSPHATE ION

Sites (35, 35)

Asymmetric Unit (35, 35)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:81 , THR A:82 , GLY A:83 , ASP A:84 , TYR A:85 , ARG A:220 , ALA A:484 , ASP A:485 , VAL A:486 , HOH A:2178 , HOH A:2201 , HOH A:3056	BINDING SITE FOR RESIDUE GOL A1722
02	AC2	SOFTWARE	TYR A:50 , ASP A:65 , THR A:67 , TYR A:68	BINDING SITE FOR RESIDUE PGE A1723
03	AC3	SOFTWARE	PRO A:27 , ASP A:65 , HOH A:2138 , HOH A:3057 , HOH A:3058	BINDING SITE FOR RESIDUE PGE A1724
04	AC4	SOFTWARE	ALA A:395 , GLU A:396 , THR A:399 , HOH A:2218 , HOH A:3059 , HOH A:3060 , HOH A:3061	BINDING SITE FOR RESIDUE PGE A1725
05	AC5	SOFTWARE	ARG A:456 , ASP A:501 , HOH A:3062 , HOH A:3063 , HOH A:3064 , HOH A:3065	BINDING SITE FOR RESIDUE PGE A1726
06	AC6	SOFTWARE	ARG A:111 , TYR A:115 , ARG A:116 , ARG A:164 , HOH A:3067 , HOH A:3069	BINDING SITE FOR RESIDUE PO4 A1727
07	AC7	SOFTWARE	GLN A:187 , GLY A:188 , LYS A:263 , ASN A:267 , GLN A:268 , THR A:269	BINDING SITE FOR RESIDUE NA A1728
08	AC8	SOFTWARE	GLN A:75 , PRO A:78 , SER A:79 , THR A:82 , ASP A:84	BINDING SITE FOR RESIDUE NA A1729
09	AC9	SOFTWARE	TYR A:253 , TYR A:493 , VAL A:496 , LEU A:497	BINDING SITE FOR RESIDUE NA A1730
10	BC1	SOFTWARE	PHE A:195 , TYR A:196 , GLY A:197 , ARG A:203 , HIS A:226 , NA A:1750	BINDING SITE FOR RESIDUE NA A1731
11	BC2	SOFTWARE	SER A:519 , GLY A:521 , GLY A:522 , GLY A:523 , ARG A:524 , PHE A:525 , ILE A:536 , NA A:1751	BINDING SITE FOR RESIDUE NA A1732
12	BC3	SOFTWARE	ALA A:72 , LEU A:73 , PRO A:74 , ARG A:86 , GLN A:268 , HOH A:2367	BINDING SITE FOR RESIDUE NA A1733
13	BC4	SOFTWARE	GLY A:57 , GLY A:83 , TYR A:85 , NA A:1752	BINDING SITE FOR RESIDUE NA A1734
14	BC5	SOFTWARE	HIS A:33 , GLN A:75 , CYS A:182 , LEU A:183 , ASP A:184	BINDING SITE FOR RESIDUE NA A1735
15	BC6	SOFTWARE	ARG A:194 , GLY A:211 , HIS A:212 , GLY A:213 , THR A:214 , HOH A:2387	BINDING SITE FOR RESIDUE NA A1736
16	BC7	SOFTWARE	GLY A:218 , SER A:219 , SER A:225 , GLN A:227 , TYR A:228 , HOH A:2437	BINDING SITE FOR RESIDUE NA A1737
17	BC8	SOFTWARE	ASP A:71 , ARG A:86 , ASP A:264 , GLN A:265 , HOH A:2165	BINDING SITE FOR RESIDUE NA A1738
18	BC9	SOFTWARE	HIS A:212 , TYR A:228 , LYS A:263 , ASP A:264 , GLN A:265 , HOH A:2445	BINDING SITE FOR RESIDUE NA A1739
19	CC1	SOFTWARE	PHE A:55 , THR A:223 , SER A:482 , HOH A:2444 , HOH A:2816	BINDING SITE FOR RESIDUE NA A1740
20	CC2	SOFTWARE	THR A:49 , ALA A:72 , LEU A:73 , HOH A:2125 , HOH A:2154 , HOH A:2166	BINDING SITE FOR RESIDUE NA A1741
21	CC3	SOFTWARE	ARG A:547 , GLN A:551 , ALA A:565 , ALA A:588 , HOH A:2840 , HOH A:2870	BINDING SITE FOR RESIDUE NA A1742
22	CC4	SOFTWARE	GLU A:176 , GLU A:277 , PHE A:280 , HOH A:2520 , HOH A:2521	BINDING SITE FOR RESIDUE NA A1743
23	CC5	SOFTWARE	SER A:224 , SER A:225 , ASN A:229 , GLY A:523 , ARG A:524 , PHE A:525 , NA A:1750	BINDING SITE FOR RESIDUE NA A1744
24	CC6	SOFTWARE	LEU A:31 , GLN A:75 , GLU A:76 , TYR A:77 , HOH A:2171	BINDING SITE FOR RESIDUE NA A1745
25	CC7	SOFTWARE	TYR A:552 , ARG A:631 , SER A:633 , ALA A:642 , HOH A:2934 , HOH A:2952	BINDING SITE FOR RESIDUE NA A1746
26	CC8	SOFTWARE	VAL A:586 , MET A:589 , SER A:656 , GLN A:714 , HOH A:2872	BINDING SITE FOR RESIDUE NA A1747
27	CC9	SOFTWARE	TYR A:85 , SER A:219 , ARG A:220 , HOH A:2437	BINDING SITE FOR RESIDUE NA A1748
28	DC1	SOFTWARE	SER A:258 , GLU A:260 , LEU A:272 , HOH A:2514	BINDING SITE FOR RESIDUE NA A1749
29	DC2	SOFTWARE	ARG A:203 , SER A:225 , ASN A:229 , NA A:1731 , NA A:1744	BINDING SITE FOR RESIDUE NA A1750
30	DC3	SOFTWARE	GLY A:517 , CYS A:518 , ARG A:524 , ILE A:536 , NA A:1732 , HOH A:2815	BINDING SITE FOR RESIDUE NA A1751
31	DC4	SOFTWARE	TYR A:85 , VAL A:440 , ARG A:481 , SER A:482 , NA A:1734 , HOH A:2733	BINDING SITE FOR RESIDUE NA A1752
32	DC5	SOFTWARE	HIS A:199 , ALA A:200 , GLU A:202 , GLY A:520 , SER A:539 , ASP A:540	BINDING SITE FOR RESIDUE NA A1753
33	DC6	SOFTWARE	LEU A:250 , PHE A:251 , ASP A:526 , ALA A:527 , TYR A:558	BINDING SITE FOR RESIDUE NA A1754
34	DC7	SOFTWARE	TRP A:336 , ASP A:366 , ASP A:367 , TRP A:411 , ARG A:443 , LYS A:476 , ASP A:478 , ASN A:480 , CYS A:518 , GLY A:520 , GLY A:521 , TRP A:537 , ASP A:540 , HOH A:3070 , HOH A:3071	BINDING SITE FOR RESIDUE GLA A1755
35	DC8	SOFTWARE	TRP A:336 , ASP A:366 , ASP A:367 , TRP A:411 , ARG A:443 , LYS A:476 , ASP A:478 , ASN A:480 , CYS A:518 , GLY A:520 , GLY A:521 , TRP A:537 , ASP A:540 , HOH A:3070	BINDING SITE FOR RESIDUE GAL A1756

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALPHA_GALACTOSIDASE	PS00512	Alpha-galactosidase signature.	AGASK_RUMGN	359-374	1	A:359-374

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALPHA_GALACTOSIDASE	PS00512	Alpha-galactosidase signature.	AGASK_RUMGN	359-374	4	A:359-374

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:719
 aligned with AGASK_RUMGN | G4T4R7 from UniProtKB/Swiss-Prot  Length:935

    Alignment length:719
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711         
          AGASK_RUMGN     2 AIIYNPNKKIFTLHTAHTTYQMQVDPLGYLLHLYYGEKTNSSMDYVLTYADRGFSGNPYAAGMDRTYSLDALPQEYPSLGTGDYRNIALNIKNEKGVESADLLFKSYEIRNGKYRLQGLPAVWADEKEAQTLEIVLADENAQVEVHLLYGVLEENDVITRSVRIKNTGTGQITIEKAAAACLDFVQGEFDVLRFYGKHAMERNLERTPLGHGTIAFGSRRGTSSHQYNPAVILAEKGTTETAGSCYGMLFVYSGNFSCEAEKDQFNQTRLLLGLNEELFSYPLASGETFTVPEVILSYSAEGLSALSQQYHNCIRNHVCRSKYVHMQRPVLINSWEAAYFDFTGDTIVDLAKEAASLGIDMVVMDDGWFGKRNDDNSSLGDWQVNETKLGGSLAELITRVHEQGMKFGIWIEPEMINEDSDLYRAHPDWAIRIQGKKPVRSRNQLLLDFSRKEVRDCVFDQICVVLDQGKIDYVKWDMNRSMADVYAGNLSYDYVLGVYDFMERLCSRYPDLLLEGCSGGGGRFDAGMLYYSPQIWCSDNTDAINRTRIQYGTSFFYPVSAMGAHVSAVPNHQTGRVTSFHTRGVTAMAGTFGYELNPALLSDEEKQQIREQIKTYKKYETLINEGTYWRLSDPFTDEIAAWMSVSEEQDHALVSVVRLMAEANQATVYVRLRGLKPDAVYLEEQSGRQYSGAALMHAGIPLPPFTEEYEAYQFAFTEL 720
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeeee...eeeeeee.....eeeeeeee.....hhhhh...........hhh...........................eeee..........eeeeeeeee.................eeeeeeeeee....eeeeeeeeee....eeeeeeeeee.....eeeeee..eeeee....eeeeeeeee..eeeeeeeee...eeeeeee...........eeeeee.........eeeeee.....eeeeeee.....eeeeee.......eee....eeeeeeeeeeee...hhhhhhhhhhhhhhh....hhhhh...eeeeehhh.....hhhhhhhhhhhhhh....eeeee....................hhhh...hhhhhhhhhhh..eeeeeee........hhhhh.hhh......................hhhhhhhhhhhhhhhh.....eeeeee..........hhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhh..eee......hhhhhhhhhhhh....hhheeeeee............hhhhhhhhhh.eeeee..hhhh.hhhhhhhhhhhhhhhhh.hhhhhheeee........eeeeeee.....eeeeeeee.........eeee........eeee.....eeehhhhhhheeee.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALPHA_GALACTOSID---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yfo A   2 AIIYNPNKKIFTLHTAHTTYQMQVDPLGYLLHLYYGEKTNSSMDYVLTYADRGFSGNPYAAGMDRTYSLDALPQEYPSLGTGDYRNIALNIKNEKGVESADLLFKSYEIRNGKYRLQGLPAVWADEKEAQTLEIVLADENAQVEVHLLYGVLEENDVITRSVRIKNTGTGQITIEKAAAACLDFVQGEFDVLRFYGKHAMERNLERTPLGHGTIAFGSRRGTSSHQYNPAVILAEKGTTETAGSCYGMLFVYSGNFSCEAEKDQFNQTRLLLGLNEELFSYPLASGETFTVPEVILSYSAEGLSALSQQYHNCIRNHVCRSKYVHMQRPVLINSWEAAYFDFTGDTIVDLAKEAASLGIDMVVMDDGWFGKRNDDNSSLGDWQVNETKLGGSLAELITRVHEQGMKFGIWIEPEMINEDSDLYRAHPDWAIRIQGKKPVRSRNQLLLDFSRKEVRDCVFDQICVVLDQGKIDYVKWDMNRSMADVYAGNLSYDYVLGVYDFMERLCSRYPDLLLEGCSGGGGRFDAGMLYYSPQIWCSDNTDAINRTRIQYGTSFFYPVSAMGAHVSAVPNHQTGRVTSFHTRGVTAMAGTFGYELNPALLSDEEKQQIREQIKTYKKYETLINEGTYWRLSDPFTDEIAAWMSVSEEQDHALVSVVRLMAEANQATVYVRLRGLKPDAVYLEEQSGRQYSGAALMHAGIPLPPFTEEYEAYQFAFTEL 720
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711

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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (12, 16)

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