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(-) Description

Title :  CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE VARIANT RR41 (BPDO-RR41)
 
Authors :  P. Kumar, J. T. Bolin
Date :  06 Apr 11  (Deposition) - 08 Jun 11  (Release) - 10 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  G,H,I,J,K,L  (1x)
Biol. Unit 2:  A,B,C,D,E,F  (1x)
Keywords :  Oxidoreductase, Degradation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mohammadi, J. Viger, P. Kumar, D. Barriault, J. T. Bolin, M. Sylvestre
Retuning Rieske-Type Oxygenases To Expand Substrate Range.
J. Biol. Chem. V. 286 27612 2011
PubMed-ID: 21653696  |  Reference-DOI: 10.1074/JBC.M111.255174

(-) Compounds

Molecule 1 - BIPHENYL DIOXYGENASE SUBUNIT ALPHA
    Chains: A, C, E, G, I, K
    EC Number: 1.14.12.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Mutation: YES
    Organism Scientific: BURKHOLDERIA XENOVORANS
    Organism Taxid: 266265
    Strain: LB400
    Synonym: BIPHENYL 2,3-DIOXYGENASE
    Variant: RR41
 
Molecule 2 - BIPHENYL DIOXYGENASE SUBUNIT BETA
    Chains: B, D, F, H, J, L
    EC Number: 1.14.12.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: BURKHOLDERIA XENOVORANS
    Organism Taxid: 266265
    Strain: LB400
    Synonym: BIPHENYL 2,3-DIOXYGENASE
    Variant: RR41

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x):       GHIJKL
Biological Unit 2 (1x): ABCDEF      

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1FE26Ligand/IonFE (II) ION
2FES6Ligand/IonFE2/S2 (INORGANIC) CLUSTER
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1FE23Ligand/IonFE (II) ION
2FES3Ligand/IonFE2/S2 (INORGANIC) CLUSTER
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1FE23Ligand/IonFE (II) ION
2FES3Ligand/IonFE2/S2 (INORGANIC) CLUSTER

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:100 , HIS A:102 , ARG A:103 , CYS A:120 , HIS A:123 , TRP A:125BINDING SITE FOR RESIDUE FES A 900
02AC2SOFTWAREGLN A:226 , HIS A:233 , HIS A:239 , ASP A:388 , HOH A:2125BINDING SITE FOR RESIDUE FE2 A 901
03AC3SOFTWARECYS C:100 , HIS C:102 , ARG C:103 , CYS C:120 , HIS C:123 , TRP C:125BINDING SITE FOR RESIDUE FES C 900
04AC4SOFTWAREGLN C:226 , HIS C:233 , HIS C:239 , ASP C:388 , HOH C:2165BINDING SITE FOR RESIDUE FE2 C 901
05AC5SOFTWARECYS E:100 , HIS E:102 , ARG E:103 , CYS E:120 , HIS E:123 , TRP E:125BINDING SITE FOR RESIDUE FES E 900
06AC6SOFTWAREGLN E:226 , HIS E:233 , HIS E:239 , ASP E:388 , HOH E:2091BINDING SITE FOR RESIDUE FE2 E 901
07AC7SOFTWARECYS G:100 , HIS G:102 , ARG G:103 , CYS G:120 , HIS G:123 , TRP G:125BINDING SITE FOR RESIDUE FES G 900
08AC8SOFTWAREGLN G:226 , HIS G:233 , HIS G:239 , ASP G:388 , HOH G:2038BINDING SITE FOR RESIDUE FE2 G 901
09AC9SOFTWARECYS I:100 , HIS I:102 , ARG I:103 , CYS I:120 , HIS I:123 , TRP I:125BINDING SITE FOR RESIDUE FES I 900
10BC1SOFTWAREGLN I:226 , HIS I:233 , HIS I:239 , ASP I:388 , HOH I:2030BINDING SITE FOR RESIDUE FE2 I 901
11BC2SOFTWARECYS K:100 , HIS K:102 , ARG K:103 , CYS K:120 , HIS K:123 , TRP K:125BINDING SITE FOR RESIDUE FES K 900
12BC3SOFTWAREGLN K:226 , HIS K:233 , HIS K:239 , ASP K:388 , HOH K:2034BINDING SITE FOR RESIDUE FE2 K 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YFI)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Phe A:327 -Pro A:328
2Asn B:105 -Pro B:106
3Phe C:327 -Pro C:328
4Asn D:105 -Pro D:106
5Phe E:327 -Pro E:328
6Asn F:105 -Pro F:106
7Phe G:327 -Pro G:328
8Asn H:105 -Pro H:106
9Phe I:327 -Pro I:328
10Asn J:105 -Pro J:106
11Phe K:327 -Pro K:328
12Asn L:105 -Pro L:106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YFI)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIESKEPS51296 Rieske [2Fe-2S] iron-sulfur domain profile.BPHA_PARXL58-140
 
 
 
 
 		  6A:58-140
C:58-140
E:58-140
G:58-140
I:58-140
K:58-140
2RING_HYDROXYL_ALPHAPS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature.BPHA_PARXL100-123
 
 
 
 
 		  6A:100-123
C:100-123
E:100-123
G:100-123
I:100-123
K:100-123
Biological Unit 1 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIESKEPS51296 Rieske [2Fe-2S] iron-sulfur domain profile.BPHA_PARXL58-140
 
 
 
 
 		  3-
-
-
G:58-140
I:58-140
K:58-140
2RING_HYDROXYL_ALPHAPS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature.BPHA_PARXL100-123
 
 
 
 
 		  3-
-
-
G:100-123
I:100-123
K:100-123
Biological Unit 2 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIESKEPS51296 Rieske [2Fe-2S] iron-sulfur domain profile.BPHA_PARXL58-140
 
 
 
 
 		  3A:58-140
C:58-140
E:58-140
-
-
-
2RING_HYDROXYL_ALPHAPS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature.BPHA_PARXL100-123
 
 
 
 
 		  3A:100-123
C:100-123
E:100-123
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 2YFI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:433
 aligned with BPHA_PARXL | P37333 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:442
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
           BPHA_PARXL    18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
               SCOP domains d2yfia1 A:18-179 automated matches                                                                                                                                d2yfia2 A:180-459 automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.ee....ee.hhhhhhhhhhhhhhhhh.....eeeee.hhh....eeeeeee..eeeeeee.....eeeee..............eee...ee......ee.....eee..hhhhhh---------.hhhhh...eeeeeee..eeeee......hhhhhhh.hhhhhhhhhh.....eee....eeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhh..............eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee...eee.....eeeeeee.....eeeeeeeeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhh..ee.................eeee...hhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------RIESKE  PDB: A:58-140 UniProt: 58-140                                              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------RING_HYDROXYL_ALPHA     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yfi A  18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAF---------FDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
                                    27        37        47        57        67        77        87        97       107       117       127       137     |   -     | 157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
                                                                                                                                                       143       153                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:180
 aligned with BPHE_PARXL | P37334 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
           BPHE_PARXL     9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
               SCOP domains d2yfib_ B: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee.....hhhhhhhh.......eeeeehhhhhhhhhhhhh...hhhhh...eeeeeeeeeeeee.....eeeeeeeeeeeeee...eeeeeeeeeeeeeee......eeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yfi B   9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188


Chain C from PDB  Type:PROTEIN  Length:433
 aligned with BPHA_PARXL | P37333 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:442
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
           BPHA_PARXL    18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
               SCOP domains d2yfic1 C:18-179 automated matches                                                                                                                                d2yfic2 C:180-459 automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.ee....ee.hhhhhhhhhhhhhhhhh.....eeeee.hhh....eeeeeee..eeeeeee.....eeeee..............eee...ee......ee.....eee..hhhhhh---------.hhhhh...eeeeeee..eeeee......hhhhhhh.hhhhhhhhhh.....eee....eeeee..hhhhhhhhhhhh........hhhhhhhhh..............eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee...eee.....eeeeeee.....eeeeeeeeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhh..ee.................eeee...hhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------RIESKE  PDB: C:58-140 UniProt: 58-140                                              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------RING_HYDROXYL_ALPHA     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yfi C  18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAF---------FDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
                                    27        37        47        57        67        77        87        97       107       117       127       137     |   -     | 157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
                                                                                                                                                       143       153                                                                                                                                                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:180
 aligned with BPHE_PARXL | P37334 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
           BPHE_PARXL     9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
               SCOP domains d2yfid_ D: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee.....hhhhhhhh.......eeeeehhhhhhhhhhhhh...hhhhh...eeeeeeeeeeeee.....eeeeeeeeeeeeee...eeeeeeeeeeeeeee......eeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yfi D   9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188


Chain E from PDB  Type:PROTEIN  Length:433
 aligned with BPHA_PARXL | P37333 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:442
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
           BPHA_PARXL    18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
               SCOP domains d2yfie1 E:18-179 automated matches                                                                                                                                d2yfie2 E:180-468 automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.ee....ee.hhhhhhhhhhhhhhhhh.....eeeee.hhh....eeeeeee..eeeeeee.....eeeee..............eee...ee......ee.....eee..hhhhhh---------.hhhhh...eeeeeee..eeeee......hhhhhhh.hhhhhhhhhh.....eee....eeeee..hhhhhhhhhhhh........hhhhhhhhh..............eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee...eeee....eeeeeee.....eeeeeeeeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhh..ee.................eeee...hhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------RIESKE  PDB: E:58-140 UniProt: 58-140                                              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------RING_HYDROXYL_ALPHA     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yfi E  18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAF---------FDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 468
                                    27        37        47        57        67        77        87        97       107       117       127       137     |   -     | 157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447  ||   466  
                                                                                                                                                       143       153                                                                                                                                                                                                                                                                                                      450|        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                           460        


Chain F from PDB  Type:PROTEIN  Length:180
 aligned with BPHE_PARXL | P37334 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
           BPHE_PARXL     9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
               SCOP domains d2yfif_ F: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee.....hhhhhhhh.......eeeeehhhhhhhhhhhhh...hhhhh...eeeeeeeeeeeee.....eeeeeeeeeeeeee...eeeeeeeeeeeeeee......eeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yfi F   9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188


Chain G from PDB  Type:PROTEIN  Length:433
 aligned with BPHA_PARXL | P37333 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:442
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
           BPHA_PARXL    18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
               SCOP domains d2yfig1 G:18-179 automated matches                                                                                                                                d2yfig2 G:180-459 automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.ee....ee.hhhhhhhhhhhhhhhhh.....eeeee.hhh....eeeeeee..eeeeeee.....eeeee..............eee...ee......ee.....eee..hhhhhh---------.hhhhh...eeeeeee..eeeee......hhhhhhh.hhhhhhhhhh.....eee....eeeee..hhhhhhhhhhhh........hhhhhhhhh..............eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeee...eeee....eeeeeee.....eeeeeeeeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.........ee.................eeee...hhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------RIESKE  PDB: G:58-140 UniProt: 58-140                                              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------RING_HYDROXYL_ALPHA     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yfi G  18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAF---------FDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
                                    27        37        47        57        67        77        87        97       107       117       127       137     |   -     | 157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
                                                                                                                                                       143       153                                                                                                                                                                                                                                                                                                                  


Chain H from PDB  Type:PROTEIN  Length:180
 aligned with BPHE_PARXL | P37334 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
           BPHE_PARXL     9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
               SCOP domains d2yfih_ H: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee.....hhhhhhhh.......eeeeehhhhhhhhhhhhh...hhhhh...eeeeeeeeeeeee.....eeeeeeeeeeeeee...eeeeeeeeeeeeeee......eeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yfi H   9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188


Chain I from PDB  Type:PROTEIN  Length:433
 aligned with BPHA_PARXL | P37333 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:442
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
           BPHA_PARXL    18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
               SCOP domains d2yfii1 I:18-179 automated matches                                                                                                                                d2yfii2 I:180-459 automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.ee....ee.hhhhhhhhhhhhhhhhh.....eeeee.hhh....eeeeeee..eeeeeee.....eeeee..............eee..eee......eee....eee..hhhhhh---------.........eeeeeee..eeeee......hhhhhhh.hhhhhhhhhh.....eeeeeeeeeeee..hhhhhhhhhhhh........hhhhhhhhh..............eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeee...eeee....eeeeeee.....eeeeeeeeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhh..ee.................eeee...hhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------RIESKE  PDB: I:58-140 UniProt: 58-140                                              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------RING_HYDROXYL_ALPHA     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yfi I  18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAF---------FDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
                                    27        37        47        57        67        77        87        97       107       117       127       137     |   -     | 157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
                                                                                                                                                       143       153                                                                                                                                                                                                                                                                                                                  


Chain J from PDB  Type:PROTEIN  Length:180
 aligned with BPHE_PARXL | P37334 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
           BPHE_PARXL     9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
               SCOP domains d2yfij_ J: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee.....hhhhhhhh.......eeeeehhhhhhhhhhhhh...hhhhh...eeeeeeeeeeeee.....eeeeeeeeeeeeee...eeeeeeeeeeeeeee......eeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yfi J   9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188


Chain K from PDB  Type:PROTEIN  Length:433
 aligned with BPHA_PARXL | P37333 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:442
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
           BPHA_PARXL    18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
               SCOP domains d2yfik1 K:18-179 automated matches                                                                                                                                d2yfik2 K:180-459 automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.ee....ee.hhhhhhhhhhhhhhhhh.....eeeee.hhh....eeeeeee..eeeeeee.....eeeee..............eee...ee......ee.....eee..hhhhhh---------.........eeeeeee..eeeee......hhhhhhh.hhhhhhhhhh.....eee....eeeee..hhhhhhhhhhh.........hhhhhhhhh..............eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeee...eee.....eeeeeee.....eeeeeeeeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhh..ee.................eeee...hhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------RIESKE  PDB: K:58-140 UniProt: 58-140                                              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------RING_HYDROXYL_ALPHA     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yfi K  18 NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAF---------FDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP 459
                                    27        37        47        57        67        77        87        97       107       117       127       137     |   -     | 157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457  
                                                                                                                                                       143       153                                                                                                                                                                                                                                                                                                                  


Chain L from PDB  Type:PROTEIN  Length:180
 aligned with BPHE_PARXL | P37334 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
           BPHE_PARXL     9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
               SCOP domains d2yfil_ L: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee.....hhhhhhhh.......eeeeehhhhhhhhhhhhh...hhhhh...eeeeeeeeeeeee.....eeeeeeeeeeeeee...eeeeeeeeeeeeeee......eeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yfi L   9 FKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEAWFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAENPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNLGFSIAKRTILLDASTLLSNNLSMFF 188
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 18)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YFI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YFI)

(-) Gene Ontology  (13, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G,I,K   (BPHA_PARXL | P37333)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0018687    biphenyl 2,3-dioxygenase activity    Catalysis of the reaction: biphenyl + NADH + H+ + O2 = (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diol + NAD+. This reaction requires Fe2+.
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
    GO:0016708    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and two atoms of oxygen are incorporated into one donor.
biological process
    GO:0019439    aromatic compound catabolic process    The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
    GO:0006725    cellular aromatic compound metabolic process    The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain B,D,F,H,J,L   (BPHE_PARXL | P37334)
molecular function
    GO:0018687    biphenyl 2,3-dioxygenase activity    Catalysis of the reaction: biphenyl + NADH + H+ + O2 = (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diol + NAD+. This reaction requires Fe2+.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0019439    aromatic compound catabolic process    The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
    GO:0006725    cellular aromatic compound metabolic process    The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  2yfi
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  BPHA_PARXL | P37333
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  BPHE_PARXL | P37334
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BPHA_PARXL | P37333: 2xr8 2xrx 2xsh 2xso 2yfj 2yfl 5aeu 5aew
        BPHE_PARXL | P37334: 2xr8 2xrx 2xsh 2xso 2yfj 2yfl 5aeu 5aew

(-) Related Entries Specified in the PDB File

2xr8 CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400
2xrx CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE IN COMPLEX WITH BIPHENYL FROM BURKHOLDERIA XENOVORANS LB400
2xsh CRYSTAL STRUCTURE OF P4 VARIANT OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400 IN COMPLEX WITH 2, 6 DI CHLOROBIPHENYL
2xso CRYSTAL STRUCTURE OF P4 VARIANT OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400
2yfj CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE VARIANT RR41 WITH DIBENZOFURAN
2yfl CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE VARIANT RR41 WITH 2-CHLORO DIBENZOFURAN