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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PH DOMAIN OF HUMAN ACTIN-BINDING PROTEIN ANILLIN ANLN
 
Authors :  M. Vollmar, J. Wang, T. Krojer, J. Elkins, P. Filippakopoulos, E. Ugoch R. Cocking, F. Von Delft, C. Bountra, C. H. Arrowsmith, J. Weigelt, A. S. Knapp
Date :  31 Jan 11  (Deposition) - 30 Mar 11  (Release) - 05 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Vollmar, J. Wang, T. Krojer, J. Elkins, P. Filippakopoulos, E. Ugochukwu, R. Cocking, F. Von Delft, C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, S. Knapp
Crystal Structure Of The Ph Domain Of Human Actin-Binding Protein Anillin Anln
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACTIN-BINDING PROTEIN ANILLIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC28-BSA4
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantR3-PRARE2
    Expression System Vector TypePLASMID
    FragmentPH DOMAIN, RESIDUES 980-1113
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1039 , GLU A:1043 , GLU A:1057 , ILE A:1059 , ARG A:1077BINDING SITE FOR RESIDUE EDO A2000
2AC2SOFTWAREPHE A:989 , TYR A:1019 , ALA A:1035 , CYS A:1037 , ARG A:1110 , HOH A:3022BINDING SITE FOR RESIDUE EDO A2001
3AC3SOFTWAREARG A:1025 , VAL A:1073 , GLN A:1075 , LYS A:1084 , HOH A:3059BINDING SITE FOR RESIDUE EDO A2002
4AC4SOFTWAREARG A:987 , ASP A:1078 , HOH A:3078BINDING SITE FOR RESIDUE EDO A2004
5AC5SOFTWARELYS A:1026 , ASN A:1027 , GLU A:1048 , PHE A:1049 , ALA A:1051BINDING SITE FOR RESIDUE EDO A2005

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:1076 -A:1081

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Y7B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Y7B)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PH_DOMAINPS50003 PH domain profile.ANLN_HUMAN983-1107  1A:983-1107

(-) Exons   (0, 0)

(no "Exon" information available for 2Y7B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with ANLN_HUMAN | Q9NQW6 from UniProtKB/Swiss-Prot  Length:1124

    Alignment length:134
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109    
          ANLN_HUMAN    980 VNSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDIRLWQ 1113
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----PH-2y7bA01 A:984-1107                                                                                                       ------ Pfam domains
         Sec.struct. author ......eeeeeeeeeee..eeeeeeeeeeee..eeeee.hhhhhh.....eeee.........ee..........eeeeeeeee..........eeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PH_DOMAIN  PDB: A:983-1107 UniProt: 983-1107                                                                                 ------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2y7b A  980 VNSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDIRLWQ 1113
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Y7B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Y7B)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: PH (111)
(-)
Family: PH (71)
1aPH-2y7bA01A:984-1107

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ANLN_HUMAN | Q9NQW6)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0090521    glomerular visceral epithelial cell migration    The orderly movement of a podocyte from one site to another, often during the development of a multicellular organism or multicellular structure. A podocyte is a specialized kidney epithelial cell.
    GO:0002244    hematopoietic progenitor cell differentiation    The process in which precursor cell type acquires the specialized features of a hematopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells.
    GO:0000281    mitotic cytokinesis    A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells.
    GO:0007096    regulation of exit from mitosis    Any process involved in the progression from anaphase/telophase to G1 that is associated with a conversion from high to low mitotic CDK activity.
    GO:0000921    septin ring assembly    The aggregation, arrangement and bonding together of septins and associated proteins to form an organized structure resembling a ring at the cell cortex.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005826    actomyosin contractile ring    A cytoskeletal structure composed of actin filaments and myosin that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells. In animal cells, the contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the contractile ring forms beneath the plasma membrane at the mother-bud neck before mitosis.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANLN_HUMAN | Q9NQW64xh3 4xoi

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