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(-) Description

Title :  STRUCTURE OF A DOMAIN FROM THE TYPE IV PILUS BIOGENESIS LIPOPROTEIN PILP, FROM PSEUDOMONAS AERUGINOSA PA01
 
Authors :  J. P. Derrick, J. Berry
Date :  11 Jan 11  (Deposition) - 18 Jan 12  (Release) - 18 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Berry, J. P. Derrick
Structure Of A Domain From The Type Iv Pilus Biogenesis Lipoprotein Pilp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PILP PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET15B
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 83-171
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964
    Synonym: PILP, TYPE 4 FIMBRIAL BIOGENESIS PROTEIN PILP

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2Y4X)

(-) Sites  (0, 0)

(no "Site" information available for 2Y4X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Y4X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Y4X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Y4X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Y4X)

(-) Exons   (0, 0)

(no "Exon" information available for 2Y4X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
 aligned with G3XCX7_PSEAE | G3XCX7 from UniProtKB/TrEMBL  Length:174

    Alignment length:87
                                    93       103       113       123       133       143       153       163       
         G3XCX7_PSEAE    84 KPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 170
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhheeeeeeee..eeeeeeee..eeeee....ee....eeeeeee..eeeeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 2y4x A  84 KPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 170
                                    93       103       113       123       133       143       153       163       


Chain A from PDB  Type:PROTEIN  Length:87
 aligned with Q51354_PSEAI | Q51354 from UniProtKB/TrEMBL  Length:174

    Alignment length:87
                                    93       103       113       123       133       143       153       163       
         Q51354_PSEAI    84 KPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 170
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhheeeeeeee..eeeeeeee..eeeee....ee....eeeeeee..eeeeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 2y4x A  84 KPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 170
                                    93       103       113       123       133       143       153       163       


Chain B from PDB  Type:PROTEIN  Length:88
 aligned with G3XCX7_PSEAE | G3XCX7 from UniProtKB/TrEMBL  Length:174

    Alignment length:88
                                    92       102       112       122       132       142       152       162        
         G3XCX7_PSEAE    83 IKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 170
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhheeeeeeee..eeeeeee....eeee....ee....eeeeeee..eeeeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 2y4x B  83 IKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 170
                                    92       102       112       122       132       142       152       162        


Chain B from PDB  Type:PROTEIN  Length:88
 aligned with Q51354_PSEAI | Q51354 from UniProtKB/TrEMBL  Length:174

    Alignment length:88
                                    92       102       112       122       132       142       152       162        
         Q51354_PSEAI    83 IKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 170
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhheeeeeeee..eeeeeee....eeee....ee....eeeeeee..eeeeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 2y4x B  83 IKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL 170
                                    92       102       112       122       132       142       152       162
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Y4X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Y4X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2Y4X)

(-) Gene Ontology  (3, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (G3XCX7_PSEAE | G3XCX7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0043683    type IV pilus biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a type IV pilus. A type IV pilus is composed of a pilus fiber and approximately ten proteins at its base; type IV pili play a role in cell motility, adherence to substrates, and aggregation.
    GO:0043107    type IV pilus-dependent motility    Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility.

Chain A,B   (Q51354_PSEAI | Q51354)
biological process
    GO:0043683    type IV pilus biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a type IV pilus. A type IV pilus is composed of a pilus fiber and approximately ten proteins at its base; type IV pili play a role in cell motility, adherence to substrates, and aggregation.
    GO:0043107    type IV pilus-dependent motility    Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q51354_PSEAI | Q51354: 2y4y
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        G3XCX7_PSEAE | G3XCX7: 2y4y
        Q51354_PSEAI | Q51354: 2lc4

(-) Related Entries Specified in the PDB File

2y4y STRUCTURE OF A DOMAIN FROM THE TYPE IV PILUS BIOGENESIS LIPOPROTEIN PILP, FROM PSEUDOMONAS AERUGINOSA