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(-) Description

Title :  X-RAY STRUCTURE OF ZNUA-WT FROM SALMONELLA ENTERICA
 
Authors :  F. Alaleona, A. Ilari, A. Battistoni, P. Petrarca, E. Chiancone
Date :  15 Nov 10  (Deposition) - 27 Apr 11  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym./Biol. Unit :  A
Keywords :  Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ilari, F. Alaleona, P. Petrarca, A. Battistoni, E. Chiancone
The X-Ray Structure Of The Zinc Transporter Znua From Salmonella Enterica Discloses A Unique Triad Of Zinc Coordinating Histidines.
J. Mol. Biol. V. 409 630 2011
PubMed-ID: 21530543  |  Reference-DOI: 10.1016/J.JMB.2011.04.036

(-) Compounds

Molecule 1 - ZINC ABC TRANSPORTER, PERIPLASMIC ZINC-BINDING PROTEIN
    Atcc: 14028
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEMBL18
    Expression System Strain: DH5[ALPHA]
    Expression System Taxid: 668369
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 27-314
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
    Synonym: ZNUA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1PGE1Ligand/IonTRIETHYLENE GLYCOL
2SO43Ligand/IonSULFATE ION
3ZN1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:59 , HIS A:140 , HIS A:147 , HIS A:211 , HOH A:2202BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREGLY A:215 , GLU A:218 , LYS A:219 , LEU A:223 , PRO A:225 , HOH A:2151 , HOH A:2203BINDING SITE FOR RESIDUE PGE A1315
3AC3SOFTWARELYS A:91 , ARG A:94 , GLN A:236BINDING SITE FOR RESIDUE SO4 A1316
4AC4SOFTWAREARG A:65 , PRO A:66 , SER A:67 , ARG A:246BINDING SITE FOR RESIDUE SO4 A1317
5AC5SOFTWAREPRO A:237 , GLY A:238 , ARG A:241 , HOH A:2204BINDING SITE FOR RESIDUE SO4 A1318

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:256 -A:310

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XY4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XY4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XY4)

(-) Exons   (0, 0)

(no "Exon" information available for 2XY4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
 aligned with Q8ZNV8_SALTY | Q8ZNV8 from UniProtKB/TrEMBL  Length:333

    Alignment length:288
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325        
         Q8ZNV8_SALTY    46 AVVASLKPLGFIASAIADGVTDTQVLLPDGASEHDYSLRPSDVKRLQGADLVVWVGPEMEAFMEKSVRNIPDNKQVTIAQLADVKPLLMKGADDDEDEHAHTGADEEKGDVHHHHGEYNMHLWLSPEIARATAVAIHEKLVELMPQSRAKLDANLKDFEAQLAATDKQVGNELAPLKGKGYFVFHDAYGYYEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVEAVARGTSVRMGTLDPLGTNIKLGKTSYSAFLSQLANQYASCLKGD 333
               SCOP domains d2xy4a_ A: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -SBP_bac_9-2xy4A01 A:28-311                                                                                                                                                                                                                                                                  --- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh.....eee..hhhhh......hhhhhhhhhhh.eeee.....hhhhhhhhh..hhh.eee.hhhhhhhhhh...---------------------........hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....hhhhhhhhh..eeee.........hhhhhhhhhhhhhhh...eeee....hhhhhhhhhh....eeee............hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2xy4 A  27 AVVASLKPLGFIASAIADGVTDTQVLLPDGASEHDYSLRPSDVKRLQGADLVVWVGPEMEAFMEKSVRNIPDNKQVTIAQLADVKPLLMKG---------------------HHHGEYNMHLWLSPEIARATAVAIHEKLVELMPQSRAKLDANLKDFEAQLAATDKQVGNELAPLKGKGYFVFHDAYGYYEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVEAVARGTSVRMGTLDPLGTNIKLGKTSYSAFLSQLANQYASCLKGD 314
                                    36        46        56        66        76        86        96       106       116|        -         -  |    146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306        
                                                                                                                    117                   139
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XY4)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: SBP_bac_9] (16)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8ZNV8_SALTY | Q8ZNV8)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0030001    metal ion transport    The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0010043    response to zinc ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
cellular component
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8ZNV8_SALTY | Q8ZNV8: 2xh8 2xqv

(-) Related Entries Specified in the PDB File

2xqv THE X-RAY STRUCTURE OF THE ZN(II) BOUND ZNUA FROM SALMONELLA ENTERICA