2XVO - JenaLib

Title :   SSO1725, A PROTEIN INVOLVED IN THE CRISPR/CAS PATHWAY

Authors :   J. Reeks, H. Liu, J. Naismith, M. White, S. Mcmahon

Date :   26 Oct 10 (Deposition) - 29 Dec 10 (Release) - 05 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.08

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C (1x),D (1x)
Biol. Unit 3: C (1x),D (1x)

Keywords :   Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Zhang, C. Rouillon, M. Kerou, J. Reeks, K. Brugger, S. Graham, J. Reimann, G. Cannone, H. Liu, S. Albers, J. H. Naismith, L. Spagnolo, M. F. White
Structure And Mechanism Of The Cmr Complex For Crispr- Mediated Antiviral Immunity.
Mol. Cell V. 45 303 2012
PubMed-ID: 22227115 | Reference-DOI: 10.1016/J.MOLCEL.2011.12.013

Compounds

Molecule 1 - SSO1725
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	C43
	Organism Scientific	:	SULFOLOBUS SOLFATARICUS
	Organism Taxid	:	2287
	Other Details	:	MERCAPTHOETHANOL ADDUCT

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C (1x)	D (1x)
Biological Unit 3 (1x)	:			C (1x)	D (1x)

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 5)

Asymmetric Unit (2, 5)

No.	Name	Count	Type	Full Name
1	BME	3	Ligand/Ion	BETA-MERCAPTOETHANOL
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	BME	-1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	BME	3	Ligand/Ion	BETA-MERCAPTOETHANOL
2	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	BME	-1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	SO4	1	Ligand/Ion	SULFATE ION

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:58 , ARG B:67 , LYS B:68 , LYS B:135	BINDING SITE FOR RESIDUE SO4 B1193
2	AC2	SOFTWARE	CYS A:96 , VAL C:29 , GLU C:170 , LYS C:171	BINDING SITE FOR RESIDUE BME C1193
3	AC3	SOFTWARE	CYS B:96 , ASN C:64 , ILE C:175 , VAL C:176 , PHE C:177 , LYS C:178	BINDING SITE FOR RESIDUE BME C1194
4	AC4	SOFTWARE	ASN B:64 , PRO C:95 , CYS C:96	BINDING SITE FOR RESIDUE BME C1195
5	AC5	SOFTWARE	LYS A:178 , ARG D:134 , HOH D:2028	BINDING SITE FOR RESIDUE SO4 D1193

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:184
 aligned with CMR7B_SULSO | Q97XK8 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:184
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186    
          CMR7B_SULSO     7 SQQVEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 190
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee......eeeee.....eeeeee..eee.......hhh.eeeehhhheeeee..eeeee.eeeeee..eeeeee......eeeeeeee..hhhhhhhh.....eeeee.hhheee..........eeeee..........eee......eeeee........hhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xvo A   9 SQQVEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 192
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188

Chain B from PDB  Type:PROTEIN  Length:181
 aligned with CMR7B_SULSO | Q97XK8 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:181
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189 
          CMR7B_SULSO    10 VEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 190
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeee.....eeeeee..eee.......hhh.eeee....eeeee..eeeee.eeeeee..eeeeee......eeeeeee...hhhhhhh......eeeee.hhheee..........eeeee..........eeee.....eeeee........hhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xvo B  12 VEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 192
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191

Chain C from PDB  Type:PROTEIN  Length:180
 aligned with CMR7B_SULSO | Q97XK8 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:181
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189 
          CMR7B_SULSO    10 VEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 190
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeee.....eeeeee..eee.......hhh.eeee....eeeee..eeeee.eeeeee..eeeeee......eeeeeee..-hhhhhhhhh....eeeee.hhheee..........eeeee..........eee......eeee.........hhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xvo C  12 VEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPS-DPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 192
                                    21        31        41        51        61        71        81        91       101    | |111       121       131       141       151       161       171       181       191 
                                                                                                                        106 |                                                                                    
                                                                                                                          108

Chain D from PDB  Type:PROTEIN  Length:179
 aligned with CMR7B_SULSO | Q97XK8 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:180
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
          CMR7B_SULSO    11 EWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 190
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeee.....eeeeee..eee.......hhh.eeeehhhheeeee..eeeee.eeeeee..eeeeee......eeeeeee..-hhhhhhh......eeeee.hhheee..........eeeee..........eeee.....eeeee........hhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2xvo D  13 EWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPS-DPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 192
                                    22        32        42        52        62        72        82        92       102   | | 112       122       132       142       152       162       172       182       192
                                                                                                                       106 |                                                                                    
                                                                                                                         108

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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	2xvo
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