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(-) Description

Title :  SSO1725, A PROTEIN INVOLVED IN THE CRISPR/CAS PATHWAY
 
Authors :  J. Reeks, H. Liu, J. Naismith, M. White, S. Mcmahon
Date :  26 Oct 10  (Deposition) - 29 Dec 10  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C (1x),D (1x)
Biol. Unit 3:  C (1x),D (1x)
Keywords :  Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhang, C. Rouillon, M. Kerou, J. Reeks, K. Brugger, S. Graham, J. Reimann, G. Cannone, H. Liu, S. Albers, J. H. Naismith, L. Spagnolo, M. F. White
Structure And Mechanism Of The Cmr Complex For Crispr- Mediated Antiviral Immunity.
Mol. Cell V. 45 303 2012
PubMed-ID: 22227115  |  Reference-DOI: 10.1016/J.MOLCEL.2011.12.013

(-) Compounds

Molecule 1 - SSO1725
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C43
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Other Details: MERCAPTHOETHANOL ADDUCT

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   C (1x)D (1x)
Biological Unit 3 (1x):   C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1BME3Ligand/IonBETA-MERCAPTOETHANOL
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1BME-1Ligand/IonBETA-MERCAPTOETHANOL
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1BME3Ligand/IonBETA-MERCAPTOETHANOL
2SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1BME-1Ligand/IonBETA-MERCAPTOETHANOL
2SO41Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:58 , ARG B:67 , LYS B:68 , LYS B:135BINDING SITE FOR RESIDUE SO4 B1193
2AC2SOFTWARECYS A:96 , VAL C:29 , GLU C:170 , LYS C:171BINDING SITE FOR RESIDUE BME C1193
3AC3SOFTWARECYS B:96 , ASN C:64 , ILE C:175 , VAL C:176 , PHE C:177 , LYS C:178BINDING SITE FOR RESIDUE BME C1194
4AC4SOFTWAREASN B:64 , PRO C:95 , CYS C:96BINDING SITE FOR RESIDUE BME C1195
5AC5SOFTWARELYS A:178 , ARG D:134 , HOH D:2028BINDING SITE FOR RESIDUE SO4 D1193

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XVO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XVO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XVO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XVO)

(-) Exons   (0, 0)

(no "Exon" information available for 2XVO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with CMR7B_SULSO | Q97XK8 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:184
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186    
          CMR7B_SULSO     7 SQQVEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 190
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee......eeeee.....eeeeee..eee.......hhh.eeeehhhheeeee..eeeee.eeeeee..eeeeee......eeeeeeee..hhhhhhhh.....eeeee.hhheee..........eeeee..........eee......eeeee........hhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xvo A   9 SQQVEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 192
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    


Chain B from PDB  Type:PROTEIN  Length:181
 aligned with CMR7B_SULSO | Q97XK8 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:181
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189 
          CMR7B_SULSO    10 VEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 190
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeee.....eeeeee..eee.......hhh.eeee....eeeee..eeeee.eeeeee..eeeeee......eeeeeee...hhhhhhh......eeeee.hhheee..........eeeee..........eeee.....eeeee........hhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xvo B  12 VEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 192
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 


Chain C from PDB  Type:PROTEIN  Length:180
 aligned with CMR7B_SULSO | Q97XK8 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:181
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189 
          CMR7B_SULSO    10 VEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 190
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeee.....eeeeee..eee.......hhh.eeee....eeeee..eeeee.eeeeee..eeeeee......eeeeeee..-hhhhhhhhh....eeeee.hhheee..........eeeee..........eee......eeee.........hhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xvo C  12 VEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPS-DPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 192
                                    21        31        41        51        61        71        81        91       101    | |111       121       131       141       151       161       171       181       191 
                                                                                                                        106 |                                                                                    
                                                                                                                          108                                                                                    


Chain D from PDB  Type:PROTEIN  Length:179
 aligned with CMR7B_SULSO | Q97XK8 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:180
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
          CMR7B_SULSO    11 EWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 190
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeee.....eeeeee..eee.......hhh.eeeehhhheeeee..eeeee.eeeeee..eeeeee......eeeeeee..-hhhhhhh......eeeee.hhheee..........eeeee..........eeee.....eeeee........hhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2xvo D  13 EWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPS-DPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQNTIIIEKNTGIVFKIPNDMLNIFRYSTT 192
                                    22        32        42        52        62        72        82        92       102   | | 112       122       132       142       152       162       172       182       192
                                                                                                                       106 |                                                                                    
                                                                                                                         108
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XVO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XVO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2XVO)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (CMR7B_SULSO | Q97XK8)
biological process
    GO:0050688    regulation of defense response to virus    Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism.

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