2XVA - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE TELLURITE DETOXIFICATION PROTEIN TEHB FROM E. COLI IN COMPLEX WITH SINEFUNGIN

Authors :   H. G. Choudhury, A. D. Cameron, S. Iwata, K. Beis

Date :   25 Oct 10 (Deposition) - 16 Feb 11 (Release) - 05 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. G. Choudhury, A. D. Cameron, S. Iwata, K. Beis
Structure And Mechanism Of The Chalcogen Detoxifying Protein Tehb From Escherichia Coli.
Biochem. J. V. 435 85 2011
PubMed-ID: 21244361 | Reference-DOI: 10.1042/BJ20102014

Molecule 1 - TELLURITE RESISTANCE PROTEIN TEHB
	Atcc	:	700926
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PHISTEV
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	511145
	Strain	:	K-12 MG1655
	Synonym	:	TELLURITE METHYLTRANSFERASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 7)

No.	Name	Count	Type	Full Name
1	SFG	4	Ligand/Ion	SINEFUNGIN
2	ZN	3	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	SFG	1	Ligand/Ion	SINEFUNGIN
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	SFG	1	Ligand/Ion	SINEFUNGIN
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	SFG	1	Ligand/Ion	SINEFUNGIN
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	SFG	1	Ligand/Ion	SINEFUNGIN
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:38 , GLY A:40 , ARG A:43 , ASN A:44 , ASP A:59 , LYS A:60 , VAL A:85 , ASP A:86 , LEU A:87 , ASN A:88 , THR A:102 , VAL A:103 , VAL A:104 , LEU A:108 , HOH A:2050 , HOH A:2076 , HOH A:2180 , HOH A:2181 , HOH A:2182 , HOH A:2183 , HOH A:2184	BINDING SITE FOR RESIDUE SFG A1198
2	AC2	SOFTWARE	GLY B:38 , GLY B:40 , ARG B:43 , ASN B:44 , ASP B:59 , LYS B:60 , VAL B:85 , ASP B:86 , LEU B:87 , ASN B:88 , THR B:102 , VAL B:103 , VAL B:104 , LEU B:108 , HOH B:2051 , HOH B:2200 , HOH B:2201 , HOH B:2202 , HOH B:2203 , HOH B:2204	BINDING SITE FOR RESIDUE SFG B1198
3	AC3	SOFTWARE	HIS B:19 , SER B:20	BINDING SITE FOR RESIDUE ZN B1199
4	AC4	SOFTWARE	GLY C:38 , GLY C:40 , ARG C:43 , ASN C:44 , ASP C:59 , LYS C:60 , VAL C:85 , ASP C:86 , LEU C:87 , ASN C:88 , THR C:102 , VAL C:103 , VAL C:104 , LEU C:108 , HOH C:2039 , HOH C:2041 , HOH C:2199 , HOH C:2200 , HOH C:2201 , HOH C:2202	BINDING SITE FOR RESIDUE SFG C1197
5	AC5	SOFTWARE	SER C:20	BINDING SITE FOR RESIDUE ZN C1198
6	AC6	SOFTWARE	GLY D:38 , GLY D:40 , ARG D:43 , ASN D:44 , ASP D:59 , LYS D:60 , VAL D:85 , ASP D:86 , LEU D:87 , ASN D:88 , THR D:102 , VAL D:103 , VAL D:104 , LEU D:108 , HOH D:2033 , HOH D:2168 , HOH D:2169 , HOH D:2170 , HOH D:2171 , HOH D:2172 , HOH D:2173	BINDING SITE FOR RESIDUE SFG D1198
7	AC7	SOFTWARE	SER D:20	BINDING SITE FOR RESIDUE ZN D1199

(no "SS Bond" information available for 2XVA)

(no "Cis Peptide Bond" information available for 2XVA)

(no "SAP(SNP)/Variant" information available for 2XVA)

(no "PROSITE Motif" information available for 2XVA)

(no "Exon" information available for 2XVA)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:199
 aligned with TEHB_ECOLI | P25397 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:199
                              1                                                                                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188         
           TEHB_ECOLI     - --MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
               SCOP domains d2xvaa_ A: automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh....hhhhhhhh......eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeee..................hhhhhhh...eeeeee..eeeeeee.....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xva A  -1 GAMVIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188

Chain B from PDB  Type:PROTEIN  Length:199
 aligned with TEHB_ECOLI | P25397 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:199
                              1                                                                                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188         
           TEHB_ECOLI     - --MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
               SCOP domains d2xvab_ B: automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh....hhhhhhhh......eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeee..................hhhhhhh...eeeeee..eeeeeee.....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xva B  -1 GAMVIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188

Chain C from PDB  Type:PROTEIN  Length:190
 aligned with TEHB_ECOLI | P25397 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:193
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193   
           TEHB_ECOLI     4 RDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARK 196
               SCOP domains d2xvac_ C: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh....hhhhhhhh......eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeee..................hhhhhhh...eeeeee..eeeeeee.---.eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xva C   4 RDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTD---NRIKLRFATMLARK 196
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173     | 183       193   
                                                                                                                                                                                                         179 183

Chain D from PDB  Type:PROTEIN  Length:194
 aligned with TEHB_ECOLI | P25397 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:194
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    
           TEHB_ECOLI     4 RDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
               SCOP domains d2xvad_ D: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) TehB-2xvaD01 D:4-193                                                                                                                                                                          ---- Pfam domains (1)
           Pfam domains (2) TehB-2xvaD02 D:4-193                                                                                                                                                                          ---- Pfam domains (2)
           Pfam domains (3) TehB-2xvaD03 D:4-193                                                                                                                                                                          ---- Pfam domains (3)
           Pfam domains (4) TehB-2xvaD04 D:4-193                                                                                                                                                                          ---- Pfam domains (4)
         Sec.struct. author ...hhhhhhhh....hhhhhhhh......eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeeeee..................hhhhhhh...eeeeee..eeeeeee.....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xva D   4 RDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK 197
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: S-adenosyl-L-methionine-dependent methyltransferases (533)

Superfamily: S-adenosyl-L-methionine-dependent methyltransferases (533)

Family: TehB-like (5)

Protein domain: automated matches (4)

Escherichia coli [TaxId: 511145] (1)

1a	d2xvaa_	A:
1b	d2xvab_	B:
1c	d2xvac_	C:
1d	d2xvad_	D:

(no "CATH Domain" information available for 2XVA)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: TehB (3)

Escherichia coli (strain K12) (2)

1a	TehB-2xvaD01	D:4-193
1b	TehB-2xvaD02	D:4-193
1c	TehB-2xvaD03	D:4-193
1d	TehB-2xvaD04	D:4-193

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (TEHB_ECOLI | P25397)

molecular function
	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
	GO:0046690	response to tellurium ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tellurium ion stimulus.
	GO:0009636	response to toxic substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2xva)

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	2xva
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	TEHB_ECOLI \| P25397	:	2xvm

2xvm	CRYSTAL STRUCTURE OF THE TELLURITE DETOXIFICATION PROTEIN TEHB FROM E. COLI IN COMPLEX WITH SAH

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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