2XTE - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF THE TBL1 TETRAMERISATION DOMAIN

Authors :   J. Oberoi, L. Fairall, P. J. Watson, J. A. Greenwood, J. W. R. Schwabe

Date :   06 Oct 10 (Deposition) - 19 Jan 11 (Release) - 16 Feb 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.90

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,I,J  (1x)
Biol. Unit 2: C,D,K,L  (1x)
Biol. Unit 3: E,F,G,H  (1x)

Keywords :   Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Oberoi, L. Fairall, P. J. Watson, J. C. Yang, Z. Czimmerer, T. Kampmann, B. T. Goult, J. A. Greenwood, J. T. Gooch, B. C. Kallenberger, L. Nagy, D. Neuhaus, J. W. R. Schwabe
Structural Basis For The Assembly Of The Smrt/Ncor Core Transcriptional Repression Machinery.
Nat. Struct. Mol. Biol. V. 18 177 2011
PubMed-ID: 21240272 | Reference-DOI: 10.1038/NSMB.1983

Molecule 1 - F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-DUET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL TETRAMERISATION DOMAIN, RESIDUES 1-90
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TRANSDUCIN BETA-LIKE PROTEIN 1X, TBL1, TRANSDUCIN-BETA-LIKE PROTEIN1,X-LINKED, SMAP55

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B							I	J
Biological Unit 2 (1x)	:			C	D							K	L
Biological Unit 3 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2XTE)

(no "Site" information available for 2XTE)

(no "SS Bond" information available for 2XTE)

Asymmetric Unit

No.	Residues
1	Ser A:2	-	Ile A:3
2	Ser B:2	-	Ile B:3
3	Ser C:2	-	Ile C:3
4	Ser D:2	-	Ile D:3
5	Ser E:2	-	Ile E:3
6	Ser F:2	-	Ile F:3
7	Ser G:2	-	Ile G:3
8	Ser H:2	-	Ile H:3
9	Ser I:2	-	Ile I:3
10	Ser J:2	-	Ile J:3
11	Ser K:2	-	Ile K:3
12	Ser L:2	-	Ile L:3

(no "SAP(SNP)/Variant" information available for 2XTE)

Asymmetric Unit (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LISH	PS50896	LIS1 homology (LisH) motif profile.	TBL1X_HUMAN	55-87	12	A:4-36 B:4-36 C:4-36 D:4-36 E:4-36 F:4-36 G:4-36 H:4-36 I:4-36 J:4-36 K:4-36 L:4-36

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LISH	PS50896	LIS1 homology (LisH) motif profile.	TBL1X_HUMAN	55-87	4	A:4-36 B:4-36 - - - - - - I:4-36 J:4-36 - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LISH	PS50896	LIS1 homology (LisH) motif profile.	TBL1X_HUMAN	55-87	4	- - C:4-36 D:4-36 - - - - - - K:4-36 L:4-36

Biological Unit 3 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LISH	PS50896	LIS1 homology (LisH) motif profile.	TBL1X_HUMAN	55-87	4	- - - - E:4-36 F:4-36 G:4-36 H:4-36 - - - -

(no "Exon" information available for 2XTE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: A:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte A   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain B from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: B:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte B   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain C from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: C:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte C   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain D from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: D:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte D   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain E from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: E:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte E   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain F from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: F:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte F   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain G from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: G:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte G   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain H from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: H:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte H   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain I from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: I:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte I   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain J from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: J:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte J   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain K from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: K:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte K   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Chain L from PDB  Type:PROTEIN  Length:66
 aligned with TBL1X_HUMAN | O60907 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:66
                                    62        72        82        92       102       112      
          TBL1X_HUMAN    53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 118
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----LisH-2xteL01 L:6-32        ----------------------------------- Pfam domains (1)
           Pfam domains (2) ----LisH-2xteL02 L:6-32        ----------------------------------- Pfam domains (2)
           Pfam domains (3) ----LisH-2xteL03 L:6-32        ----------------------------------- Pfam domains (3)
           Pfam domains (4) ----LisH-2xteL04 L:6-32        ----------------------------------- Pfam domains (4)
           Pfam domains (5) ----LisH-2xteL05 L:6-32        ----------------------------------- Pfam domains (5)
           Pfam domains (6) ----LisH-2xteL06 L:6-32        ----------------------------------- Pfam domains (6)
           Pfam domains (7) ----LisH-2xteL07 L:6-32        ----------------------------------- Pfam domains (7)
           Pfam domains (8) ----LisH-2xteL08 L:6-32        ----------------------------------- Pfam domains (8)
           Pfam domains (9) ----LisH-2xteL09 L:6-32        ----------------------------------- Pfam domains (9)
          Pfam domains (10) ----LisH-2xteL10 L:6-32        ----------------------------------- Pfam domains (10)
          Pfam domains (11) ----LisH-2xteL11 L:6-32        ----------------------------------- Pfam domains (11)
          Pfam domains (12) ----LisH-2xteL12 L:6-32        ----------------------------------- Pfam domains (12)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --LISH  PDB: L:4-36 UniProt: 55-87 ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2xte L   2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN  67
                                    11        21        31        41        51        61

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2XTE)

(no "CATH Domain" information available for 2XTE)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: LisH] (4)

Family: LisH (4)

Homo sapiens (Human) (3)

1a	LisH-2xteL01	L:6-32
1b	LisH-2xteL02	L:6-32
1c	LisH-2xteL03	L:6-32
1d	LisH-2xteL04	L:6-32
1e	LisH-2xteL05	L:6-32
1f	LisH-2xteL06	L:6-32
1g	LisH-2xteL07	L:6-32
1h	LisH-2xteL08	L:6-32
1i	LisH-2xteL09	L:6-32
1j	LisH-2xteL10	L:6-32
1k	LisH-2xteL11	L:6-32
1l	LisH-2xteL12	L:6-32

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (TBL1X_HUMAN | O60907)

molecular function
	GO:0008013	beta-catenin binding	Interacting selectively and non-covalently with the beta subunit of the catenin complex.
	GO:0042393	histone binding	Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
	GO:0008022	protein C-terminus binding	Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019904	protein domain specific binding	Interacting selectively and non-covalently with a specific domain of a protein.
	GO:0003714	transcription corepressor activity	Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
	GO:0008134	transcription factor binding	Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
	GO:0044212	transcription regulatory region DNA binding	Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
biological process
	GO:0060070	canonical Wnt signaling pathway	The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes.
	GO:0044255	cellular lipid metabolic process	The chemical reactions and pathways involving lipids, as carried out by individual cells.
	GO:0016575	histone deacetylation	The modification of histones by removal of acetyl groups.
	GO:0000122	negative regulation of transcription from RNA polymerase II promoter	Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0045893	positive regulation of transcription, DNA-templated	Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0007605	sensory perception of sound	The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0000118	histone deacetylase complex	A protein complex that possesses histone deacetylase activity.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005876	spindle microtubule	Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.
	GO:0017053	transcriptional repressor complex	A protein complex that possesses activity that prevents or downregulates transcription.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2xte)

	Sites
(no "Sites" information available for 2xte)

	Cis Peptide Bonds
		Ser A:2 - Ile A:3	[ RasMol ]
		Ser B:2 - Ile B:3	[ RasMol ]
		Ser C:2 - Ile C:3	[ RasMol ]
		Ser D:2 - Ile D:3	[ RasMol ]
		Ser E:2 - Ile E:3	[ RasMol ]
		Ser F:2 - Ile F:3	[ RasMol ]
		Ser G:2 - Ile G:3	[ RasMol ]
		Ser H:2 - Ile H:3	[ RasMol ]
		Ser I:2 - Ile I:3	[ RasMol ]
		Ser J:2 - Ile J:3	[ RasMol ]
		Ser K:2 - Ile K:3	[ RasMol ]
		Ser L:2 - Ile L:3	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
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Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2xte
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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UniProtKB/Swiss-Prot
	TBL1X_HUMAN \| O60907	:	2xtc 2xtd

2xtc	STRUCTURE OF THE TBL1 TETRAMERISATION DOMAIN
2xtd	STRUCTURE OF THE TBL1 TETRAMERISATION DOMAIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 12)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 12)

Gene Ontology (24, 24)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File