2XRN - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TTGV

Authors :   D. Lu, S. Fillet, C. Meng, Y. Alguel, P. Kloppsteck, J. Bergeron, T. Krel M. -T. Gallegos, J. Ramos, X. Zhang

Date :   17 Sep 10 (Deposition) - 01 Dec 10 (Release) - 01 Dec 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Dna-Binding Protein, Tetramer Gene Regulator, Cooperative Dna Binding, Multidrug Binding Protein, Antibiotic Resistance (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Lu, S. Fillet, C. Meng, Y. Alguel, P. Kloppsteck, J. Bergeron, T. Krell, M. T. Gallegos, J. Ramos, X. Zhang
Crystal Structure Of Ttgv In Complex With Its Dna Operator Reveals A General Model For Cooperative Dna Binding Of Tetrameric Gene Regulators.
Genes Dev. V. 24 2556 2010
PubMed-ID: 21078819 | Reference-DOI: 10.1101/GAD.603510

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGV
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 14-253
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS PUTIDA
	Organism Taxid	:	303
	Synonym	:	TOLUENE TOLERANCE PUMP TTGGHI OPERON REPRESSOR

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2XRN)

(no "Site" information available for 2XRN)

(no "SS Bond" information available for 2XRN)

(no "Cis Peptide Bond" information available for 2XRN)

(no "SAP(SNP)/Variant" information available for 2XRN)

Asymmetric Unit (2, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ICLR	PS51077	IclR-type HTH domain profile.	TTGV_PSEPT	14-76	1	B:14-76
2	ICLR_ED	PS51078	IclR effector binding domain profile.	TTGV_PSEPT	70-253	2	A:70-253 B:70-253

Biological Unit 1 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ICLR	PS51077	IclR-type HTH domain profile.	TTGV_PSEPT	14-76	2	B:14-76
2	ICLR_ED	PS51078	IclR effector binding domain profile.	TTGV_PSEPT	70-253	4	A:70-253 B:70-253

(no "Exon" information available for 2XRN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:239
 aligned with TTGV_PSEPT | Q93PU6 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:239
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244         
           TTGV_PSEPT    15 QVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLINQAQTDILSLVKPYLRSLAEELDESVCLASLAGDKIYVLDRIVSERELRVVFPIGINVPAAATAAGKVLLAALPDETLQAALGEQLPVLTSNTLGRKALVKQLSEVRQSGVASDLDEHIDGVCSFATLLDTYLGYYSLAIVMPSSRASKQSDLIKKALLQSKLNIERAIGR 253
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh....eehhhhhhhh..hhhhhhhhhhhhhh...eee.hhh.eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee..............eee...hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhheeeee......eeeeeeeeee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) HTH_ICLR  PDB: - UniProt: 14-76                               --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------ICLR_ED  PDB: A:70-253 UniProt: 70-253                                                                                                                                                   PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xrn A  15 QVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLINQAQTDILSLVKPYLRSLAEELDESVSLASLAGDKIYVLDRIVSERELRVVFPIGINVPAAATAAGKVLLAALPDETLQAALGEQLPVLTSNTLGRKALVKQLSEVRQSGVASDLDEHIDGVSSFATLLDTYLGYYSLAIVMPSSRASKQSDLIKKALLQSKLNIERAIGR 253
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244

Chain B from PDB  Type:PROTEIN  Length:241
 aligned with TTGV_PSEPT | Q93PU6 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:241
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 
           TTGV_PSEPT    13 GIQVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLINQAQTDILSLVKPYLRSLAEELDESVCLASLAGDKIYVLDRIVSERELRVVFPIGINVPAAATAAGKVLLAALPDETLQAALGEQLPVLTSNTLGRKALVKQLSEVRQSGVASDLDEHIDGVCSFATLLDTYLGYYSLAIVMPSSRASKQSDLIKKALLQSKLNIERAIGR 253
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....eehhhhhhhh..hhhhhhhhhhhhhh...eee.hhh.eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee..............eee...hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhheeeee......eeeeeeeeee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -HTH_ICLR  PDB: B:14-76 UniProt: 14-76                          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------ICLR_ED  PDB: B:70-253 UniProt: 70-253                                                                                                                                                   PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xrn B  13 SIQVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLINQAQTDILSLVKPYLRSLAEELDESVSLASLAGDKIYVLDRIVSERELRVVFPIGINVPAAATAAGKVLLAALPDETLQAALGEQLPVLTSNTLGRKALVKQLSEVRQSGVASDLDEHIDGVSSFATLLDTYLGYYSLAIVMPSSRASKQSDLIKKALLQSKLNIERAIGR 253
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2XRN)

(no "CATH Domain" information available for 2XRN)

(no "Pfam Domain" information available for 2XRN)

Asymmetric Unit(hide GO term definitions)

Chain A,B (TTGV_PSEPT | Q93PU6)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

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Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	TTGV_PSEPT \| Q93PU6	:	2xro

2xro	CRYSTAL STRUCTURE OF TTGV IN COMPLEX WITH ITS DNA OPERATOR

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Ligands, Modified Residues, Ions (0, 0)

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Exons (0, 0)

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