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(-) Description

Title :  CRYSTAL STRUCTURE OF NICOTIANA TABACUM MALONYLTRANSFERASE (NTMAT1) COMPLEXED WITH MALONYL-COA
 
Authors :  B. A. Manjasetty, X. H. Yu, S. Panjikar, G. Taguchi, M. R. Chance, C. J. Li
Date :  11 Sep 10  (Deposition) - 21 Sep 11  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Xenobiotics, Naphthols (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. A. Manjasetty, X. H. Yu, S. Panjikar, G. Taguchi, M. R. Chance, C. J. L
Structural Basis For Modification Of Flavonol And Naphthol Glucoconjugates By Nicotiana Tabacum Malonyltransferase (Ntmat1).
Planta V. 236 781 2012
PubMed-ID: 22610270  |  Reference-DOI: 10.1007/S00425-012-1660-8

(-) Compounds

Molecule 1 - MALONYLTRANSFERASE
    Cell: BY-2
    Chains: A
    Organism Common: COMMON TOBACCO
    Organism Scientific: NICOTIANA TABACUM
    Organism Taxid: 4097

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1MLC1Ligand/IonMALONYL-COENZYME A
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 26)
No.NameCountTypeFull Name
1MLC2Ligand/IonMALONYL-COENZYME A
2MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:254 , HIS A:266 , THR A:268 , SER A:269 , PHE A:270 , THR A:271 , SER A:385BINDING SITE FOR RESIDUE MLC A1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XR7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XR7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XR7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XR7)

(-) Exons   (0, 0)

(no "Exon" information available for 2XR7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:452
 aligned with Q589Y0_TOBAC | Q589Y0 from UniProtKB/TrEMBL  Length:453

    Alignment length:452
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451  
         Q589Y0_TOBAC     2 ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFTHGISFL 453
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...........eeeee.hhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhhhhh..eee.......eeeee.....eeeeee...hhhhhh.....hhhhhhhhh......eee..eee...eeeeeeee...eeeeeeee......hhhhhhhhhhhhhhhhh..hhhhhhhhhh............hhhhhh..hhhhh.................eeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh........eeeeeee.....................eeeeeeehhhhh..hhhhhhhhhhhhhhh....hhhhhhh..........hhh.eeee......hhhhh........eeee.hhh.....eeeeee.......eeeee..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xr7 A   2 ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRmRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDmDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGmSIWNEmKKYKHmmKmSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGmEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRmKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISmSLSKSKDSDGDLEIGLSLSKTRmNAFAAmFTHGISFL 453
                                    11        21        31     |  41        51        61        71        81        91       101     | 111       121       131       141       151       161       171       181       191       201       211  |    221    || 231       241       251       261       271       281       291     | 301       311       321       331       341       351    |  361       371       381       391       401       411    |  421       431       441   |   451  
                                                              37-MSE                                                               107-MSE                                                                                                    214-MSE |     || |                                                                 297-MSE                                                    356-MSE                                                     416-MSE                439-MSE |        
                                                                                                                                                                                                                                                    220-MSE || |                                                                                                                                                                                                                     445-MSE    
                                                                                                                                                                                                                                                          226-MSE                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                           227-MSE                                                                                                                                                                                                                              
                                                                                                                                                                                                                                                             229-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XR7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XR7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2XR7)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q589Y0_TOBAC | Q589Y0)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016747    transferase activity, transferring acyl groups other than amino-acyl groups    Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).

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