2XOD - JenaLib

Title :   CRYSTAL STRUCTURE OF FLAVOPROTEIN NRDI FROM BACILLUS ANTHRACIS IN THE OXIDISED FORM

Authors :   R. Johansson, J. Sprenger, E. Torrents, M. Sahlin, B. M. Sjoberg, D. T.

Date :   14 Aug 10 (Deposition) - 25 Aug 10 (Release) - 20 Oct 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   0.96

Chains :   Asym./Biol. Unit : A

Keywords :   Flavoprotein, Redox Protein, Ribonucleotide Reductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Johansson, E. Torrents, D. Lundin, J. Sprenger, M. Sahlin, B. M. Sjoberg, D. T. Logan
High Resolution Crystal Structures Of Nrdi In The Oxidised And Reduced States: An Unusual Flavodoxin
Febs J. V. 277 4265 2010
PubMed-ID: 20831589 | Reference-DOI: 10.1111/J.1742-4658.2010.07815.X

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:7 , MET A:8 , THR A:9 , GLY A:10 , ASN A:11 , VAL A:12 , ASN A:20 , TYR A:41 , THR A:42 , THR A:43 , GLY A:44 , PHE A:45 , GLY A:46 , SER A:69 , GLY A:70 , ASN A:71 , TRP A:74 , MET A:77 , PHE A:78 , GLY A:79 , LEU A:99 , THR A:118 , HOH A:2189 , HOH A:2190	BINDING SITE FOR RESIDUE FMN A1119
2	AC2	SOFTWARE	HIS A:17 , GLU A:98 , CAC A:1121 , HOH A:2191	BINDING SITE FOR RESIDUE ZN A1120
3	AC3	SOFTWARE	TYR A:5 , LYS A:13 , HIS A:17 , GLU A:98 , ZN A:1120 , HOH A:2052 , HOH A:2155	BINDING SITE FOR RESIDUE CAC A1121

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:118
 aligned with Q81TB7_BACAN | Q81TB7 from UniProtKB/TrEMBL  Length:119

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
         Q81TB7_BACAN     1 MLVAYDSMTGNVKRFIHKLNMPAVQIGEDLVIDEDFILITYTTGFGNVPERVLEFLERNNEKLKGVSASGNRNWGDMFGASADKISAKYEVPIVSKFELSGTNNDVEYFKERVREIAT 118
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2xodA00 A:1-118  [code=3.40.50.360, no name defined]                                                                   CATH domains
               Pfam domains --Flavodoxin_NdrI-2xodA01 A:3-111                                                                              ------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhh..eee..........eeeee........hhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2xod A   1 MLVAYDSMTGNVKRFIHKLNMPAVQIGEDLVIDEDFILITYTTGFGNVPERVLEFLERNNEKLKGVSASGNRNWGDMFGASADKISAKYEVPIVSKFELSGTNNDVEYFKERVREIAT 118
                                    10        20        30        40        50        60        70        80        90       100       110

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q81TB7_BACAN | Q81TB7)

molecular function
	GO:0003674		molecular_function		Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
	GO:0000166		nucleotide binding		Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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Description