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(-) Description

Title :  LNTA, A VIRULENCE FACTOR FROM LISTERIA MONOCYTOGENES
 
Authors :  A. Lebreton, V. Job, T. Thamnam, A. Camejo, P. J. Mattei, B. Regnault, D. A. Dessen, P. Cossart, H. Bierne
Date :  19 Jul 10  (Deposition) - 02 Feb 11  (Release) - 06 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Toxin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Lebreton, G. Lakisic, V. Job, L. Fritsch, T. N. Tham, A. Camejo, P. J. Mattei, B. Regnault, M. A. Nahori, D. Cabanes, A. Gautreau, S. Ait-Si-Ali, A. Dessen, P. Cossart, H. Bierne
A Bacterial Protein Targets The Bahd1 Chromatin Complex To Stimulate Type Iii Interferon Response.
Science V. 331 1319 2011
PubMed-ID: 21252314  |  Reference-DOI: 10.1126/SCIENCE.1200120

(-) Compounds

Molecule 1 - LMO0438 PROTEIN
    Atcc: BAA-679
    Chains: A
    Fragment: RESIDUES 34-205
    Mutation: YES
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 1639
    Strain: EGDE
    Synonym: LNTA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:131 , ALA A:132BINDING SITE FOR RESIDUE GOL A1203
2AC2SOFTWAREASP A:70 , GLU A:73 , ARG A:113 , TYR A:114 , LYS A:163BINDING SITE FOR RESIDUE GOL A1204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XL4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XL4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XL4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XL4)

(-) Exons   (0, 0)

(no "Exon" information available for 2XL4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
 aligned with LNTA_LISMO | Q8Y9T5 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:147
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       
           LNTA_LISMO    56 RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLD 202
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xl4 A  56 RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQmIGTmKRYQQEILSIDAIKRASEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLD 202
                                    65        75        85        95       105 |   | 115       125       135       145       155       165       175       185       195       
                                                                             107-MSE                                                                                           
                                                                                 111-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XL4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XL4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2XL4)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (LNTA_LISMO | Q8Y9T5)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

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 Related Entries

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UniProtKB/Swiss-Prot
        LNTA_LISMO | Q8Y9T5: 4cih

(-) Related Entries Specified in the PDB File

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