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(-) Description

Title :  STRUCTURE OF MURE FROM M.TUBERCULOSIS WITH DIPEPTIDE AND ADP
 
Authors :  C. Basavannacharya, P. R. Moody, S. Bhakta, N. Keep
Date :  03 Jul 10  (Deposition) - 18 Aug 10  (Release) - 29 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Ligase, Peptidoglycan, Peptidase Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Basavannacharya, P. R. Moody, T. Munshi, N. Cronin, N. H. Keep, S. Bhakta
Essential Residues For The Enzyme Activity Of Atp-Dependent Mure Ligase From Mycobacterium Tuberculosis.
Protein Cell V. 1 1011 2010
PubMed-ID: 21153518  |  Reference-DOI: 10.1007/S13238-010-0132-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6- DIAMINOPIMELATE LIGASE
    Chains: A, B, C, D
    EC Number: 6.3.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)/PLYSS
    Expression System Taxid: 469008
    Expression System Vector: PET28BPLUS
    Expression System Vector Type: PLASMID
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: MURE, UDP-MURNAC-L-ALA-D-GLU:MESO-DIAMINOPIMELATE LIGASE, MESO-DIAMINOPIMELATE-ADDING ENZYME, MESO-A2PM-ADDING ENZYME, UDP-N- ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE, UDP-MURNAC-TRIPEPTIDE SYNTHETASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 22)

Asymmetric Unit (4, 22)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
2KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG10Ligand/IonMAGNESIUM ION
4UAG4Ligand/IonURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION
4UAG1Ligand/IonURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION
4UAG1Ligand/IonURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION
4UAG1Ligand/IonURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION
4UAG1Ligand/IonURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:154 , SER A:155 , GLY A:156 , LYS A:157 , THR A:158 , THR A:159 , GLU A:220 , ASN A:243 , TYR A:343 , ASN A:347 , ARG A:377 , LEU A:378 , ASP A:392 , ALA A:394 , SER A:402 , MG A:1534BINDING SITE FOR RESIDUE ADP A1533
02AC2SOFTWARETHR A:158 , THR A:180 , GLU A:220 , ADP A:1533 , HOH A:2001BINDING SITE FOR RESIDUE MG A1534
03AC3SOFTWAREASP A:247 , HIS A:248 , KCX A:262 , UAG A:1536BINDING SITE FOR RESIDUE MG A1535
04AC4SOFTWARELEU A:67 , ARG A:68 , ALA A:69 , GLN A:70 , GLY A:83 , SER A:84 , THR A:85 , THR A:86 , GLY A:88 , HIS A:91 , ARG A:128 , LEU A:194 , THR A:195 , THR A:196 , GLU A:198 , SER A:222 , LEU A:228 , ARG A:230 , HIS A:248 , MG A:1535 , HOH A:2001BINDING SITE FOR RESIDUE UAG A1536
05AC5SOFTWAREGLY B:140 , ASP D:215BINDING SITE FOR RESIDUE MG B1533
06AC6SOFTWARETHR B:154 , SER B:155 , GLY B:156 , LYS B:157 , THR B:158 , THR B:159 , THR B:180 , GLU B:220 , ASN B:243 , TYR B:343 , ASN B:347 , ARG B:377 , ASP B:392 , ALA B:394 , VAL B:403 , MG B:1535 , HOH B:2001BINDING SITE FOR RESIDUE ADP B1534
07AC7SOFTWARETHR B:158 , THR B:180 , GLU B:220 , ADP B:1534 , HOH B:2001BINDING SITE FOR RESIDUE MG B1535
08AC8SOFTWARELEU B:67 , ARG B:68 , ALA B:69 , GLN B:70 , LEU B:81 , GLY B:83 , SER B:84 , THR B:85 , THR B:86 , GLY B:88 , HIS B:91 , LEU B:194 , THR B:195 , THR B:196 , GLU B:198 , SER B:222 , HIS B:224 , ARG B:230 , HIS B:248 , MG B:1537 , HOH B:2001BINDING SITE FOR RESIDUE UAG B1536
09AC9SOFTWARELYS B:157 , HIS B:248 , KCX B:262 , UAG B:1536BINDING SITE FOR RESIDUE MG B1537
10BC1SOFTWARESER C:155 , GLY C:156 , LYS C:157 , THR C:158 , THR C:159 , THR C:180 , GLU C:220 , ASN C:243 , TYR C:343 , ASN C:347 , ARG C:377 , LEU C:378 , ASP C:392 , ALA C:394 , SER C:402 , VAL C:403 , MG C:1534 , HOH C:2001BINDING SITE FOR RESIDUE ADP C1533
11BC2SOFTWARETHR C:158 , THR C:180 , GLU C:220 , ADP C:1533 , UAG C:1535 , HOH C:2001BINDING SITE FOR RESIDUE MG C1534
12BC3SOFTWARELEU C:67 , ARG C:68 , ALA C:69 , GLN C:70 , LEU C:81 , GLY C:83 , SER C:84 , THR C:85 , THR C:86 , GLY C:88 , HIS C:91 , THR C:195 , THR C:196 , GLU C:198 , SER C:222 , HIS C:224 , ARG C:230 , HIS C:248 , MG C:1534 , MG C:1536 , HOH C:2001BINDING SITE FOR RESIDUE UAG C1535
13BC4SOFTWAREASP C:247 , HIS C:248 , UAG C:1535BINDING SITE FOR RESIDUE MG C1536
14BC5SOFTWAREHIS D:395 , ASP D:448 , GLY D:502BINDING SITE FOR RESIDUE MG D1533
15BC6SOFTWARESER D:155 , GLY D:156 , LYS D:157 , THR D:158 , THR D:159 , THR D:180 , GLU D:220 , ASN D:243 , TYR D:343 , ASN D:344 , ASN D:347 , ARG D:377 , LEU D:378 , ASP D:392 , ALA D:394 , SER D:402 , VAL D:403 , MG D:1535 , HOH D:2001BINDING SITE FOR RESIDUE ADP D1534
16BC7SOFTWARETHR D:158 , THR D:180 , GLU D:220 , ADP D:1534 , HOH D:2001BINDING SITE FOR RESIDUE MG D1535
17BC8SOFTWARELEU D:67 , ARG D:68 , ALA D:69 , GLN D:70 , LEU D:81 , GLY D:83 , SER D:84 , THR D:85 , THR D:86 , GLY D:88 , HIS D:91 , LEU D:194 , THR D:195 , GLU D:198 , SER D:222 , HIS D:224 , ARG D:230 , HIS D:248 , MG D:1537 , HOH D:2001BINDING SITE FOR RESIDUE UAG D1536
18BC9SOFTWARELYS D:157 , ASP D:247 , HIS D:248 , KCX D:262 , UAG D:1536BINDING SITE FOR RESIDUE MG D1537

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XJA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XJA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XJA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XJA)

(-) Exons   (0, 0)

(no "Exon" information available for 2XJA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:502
 aligned with MURE_MYCTO | P9WJL2 from UniProtKB/Swiss-Prot  Length:535

    Alignment length:507
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       
           MURE_MYCTO    26 LRPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------2xjaA02 A:142-375  [code=3.40.1190.10, no name defined]                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhhhhhhh.ee.............ee.eee.hhhhh...eeeee.......hhhhhhhhhhh...eeeehhhhhhhhh......eee......hhhhhhhhhh.hhhhh.eeeeee...hhhhhhhhhhhhhhhh...eeeee..eeee............hhhhhhhhhhhhhhh...eeeee.hhhhhhh.........eeee............hhhhhhhhhhh...........eeeee..hhhhhhhhhhhh..eeee.......eeeeeeee.....eeeeee.......eeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......eee......eeeee...hhhhhhhhhhhh......eeeeeee....hhhhhhhhhhhhhhhh.eeeeee......hhhhhhhhhhhhhh---....eee..hhhhhhhhhhhhh....eeeee.......ee.--.ee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xja A  26 LRPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAkASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAA---GDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRG--RVRPFDDRVELAAALEALE 532
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255      |265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465 |   | 475       485       495       505     | 515       525       
                                                                                                                                                                                                                                                                      262-KCX                                                                                                                                                                                                      467 471                                     511  |                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  514                  


Chain A from PDB  Type:PROTEIN  Length:502
 aligned with MURE_MYCTU | P9WJL3 from UniProtKB/Swiss-Prot  Length:535

    Alignment length:507
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       
           MURE_MYCTU    26 LRPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------2xjaA02 A:142-375  [code=3.40.1190.10, no name defined]                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhhhhhhh.ee.............ee.eee.hhhhh...eeeee.......hhhhhhhhhhh...eeeehhhhhhhhh......eee......hhhhhhhhhh.hhhhh.eeeeee...hhhhhhhhhhhhhhhh...eeeee..eeee............hhhhhhhhhhhhhhh...eeeee.hhhhhhh.........eeee............hhhhhhhhhhh...........eeeee..hhhhhhhhhhhh..eeee.......eeeeeeee.....eeeeee.......eeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......eee......eeeee...hhhhhhhhhhhh......eeeeeee....hhhhhhhhhhhhhhhh.eeeeee......hhhhhhhhhhhhhh---....eee..hhhhhhhhhhhhh....eeeee.......ee.--.ee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xja A  26 LRPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAkASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAA---GDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRG--RVRPFDDRVELAAALEALE 532
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255      |265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465 |   | 475       485       495       505     | 515       525       
                                                                                                                                                                                                                                                                      262-KCX                                                                                                                                                                                                      467 471                                     511  |                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  514                  


Chain B from PDB  Type:PROTEIN  Length:500
 aligned with MURE_MYCTO | P9WJL2 from UniProtKB/Swiss-Prot  Length:535

    Alignment length:506
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
           MURE_MYCTO    27 RPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------2xjaB02 B:142-375  [code=3.40.1190.10, no name defined]                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...------.......ee.eee.hhhhh...eeeee.......hhhhhhhhhhh...eeeehhhhhhhhh......eee...hhhhhhhhhhhhh.hhhhhheeeeee...hhhhhhhhhhhhhhhh...eeeee..eeee............hhhhhhhhhhhhhhh...eeeee.hhhhhhh.........eeee............hhhhhhhhhhh...........eeeee..hhhhhhhhhhhh..eeee.......eeeeeeee.....eeeeee.....eeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......ee.......eeee....hhhhhhhhhhhh......eeeeeee.......hhhhhhhhhhhhh.eeeeee......hhhhhhhhhhhhhh.......eee..hhhhhhhhhhhhh....eeee........ee....ee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xja B  27 RPNAVVGVRLAALADQVGAAL------RAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAkASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
                                    36        46|      |56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     | 266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
                                               47     54                                                                                                                                                                                                             262-KCX                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:500
 aligned with MURE_MYCTU | P9WJL3 from UniProtKB/Swiss-Prot  Length:535

    Alignment length:506
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
           MURE_MYCTU    27 RPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------2xjaB02 B:142-375  [code=3.40.1190.10, no name defined]                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...------.......ee.eee.hhhhh...eeeee.......hhhhhhhhhhh...eeeehhhhhhhhh......eee...hhhhhhhhhhhhh.hhhhhheeeeee...hhhhhhhhhhhhhhhh...eeeee..eeee............hhhhhhhhhhhhhhh...eeeee.hhhhhhh.........eeee............hhhhhhhhhhh...........eeeee..hhhhhhhhhhhh..eeee.......eeeeeeee.....eeeeee.....eeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......ee.......eeee....hhhhhhhhhhhh......eeeeeee.......hhhhhhhhhhhhh.eeeeee......hhhhhhhhhhhhhh.......eee..hhhhhhhhhhhhh....eeee........ee....ee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xja B  27 RPNAVVGVRLAALADQVGAAL------RAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAkASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
                                    36        46|      |56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     | 266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
                                               47     54                                                                                                                                                                                                             262-KCX                                                                                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:498
 aligned with MURE_MYCTO | P9WJL2 from UniProtKB/Swiss-Prot  Length:535

    Alignment length:506
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
           MURE_MYCTO    27 RPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------2xjaC02 C:142-375  [code=3.40.1190.10, no name defined]                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...--------.....ee.eee.hhhhh...eeeee.......hhhhhhhhhhh...eeeehhhhhhhhh......eee......hhhhhhhhhh.hhhhh.eeeeee...hhhhhhhhhhhhhhhh...eeee....eee............hhhhhhhhhhhhhhh...eeeee.hhhhhhh.........eeee............hhhhhhhhhhh...........eeeee..hhhhhhhhhhhh.eeeee.......eeeeeeee.....eeeeee.......eeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......eee......eeeee...hhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhhh.eeee........hhhhhhhhhhhhhhhhh....eee..hhhhhhhhhhhhh....eeeee.......ee....ee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xja C  27 RPNAVVGVRLAALADQVGAAL--------VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAkASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
                                    36        46|       56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     | 266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
                                               47       56                                                                                                                                                                                                           262-KCX                                                                                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:498
 aligned with MURE_MYCTU | P9WJL3 from UniProtKB/Swiss-Prot  Length:535

    Alignment length:506
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
           MURE_MYCTU    27 RPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------2xjaC02 C:142-375  [code=3.40.1190.10, no name defined]                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...--------.....ee.eee.hhhhh...eeeee.......hhhhhhhhhhh...eeeehhhhhhhhh......eee......hhhhhhhhhh.hhhhh.eeeeee...hhhhhhhhhhhhhhhh...eeee....eee............hhhhhhhhhhhhhhh...eeeee.hhhhhhh.........eeee............hhhhhhhhhhh...........eeeee..hhhhhhhhhhhh.eeeee.......eeeeeeee.....eeeeee.......eeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......eee......eeeee...hhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhhh.eeee........hhhhhhhhhhhhhhhhh....eee..hhhhhhhhhhhhh....eeeee.......ee....ee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xja C  27 RPNAVVGVRLAALADQVGAAL--------VTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAkASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
                                    36        46|       56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     | 266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
                                               47       56                                                                                                                                                                                                           262-KCX                                                                                                                                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:488
 aligned with MURE_MYCTO | P9WJL2 from UniProtKB/Swiss-Prot  Length:535

    Alignment length:506
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
           MURE_MYCTO    27 RPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------2xjaD02 D:142-375  [code=3.40.1190.10, no name defined]                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------      -------Mur_ligase-2xjaD01 D:61-139                                                    -----------Mur_ligase_M-2xjaD09 D:151-355                                                                                                                                                                               ------------------Mur_ligase_C-2xjaD05 D:374-459                                                        -----------------------------------------------------   ----------------- Pfam domains (1)
           Pfam domains (2) ---------------------      -------Mur_ligase-2xjaD02 D:61-139                                                    -----------Mur_ligase_M-2xjaD10 D:151-355                                                                                                                                                                               ------------------Mur_ligase_C-2xjaD06 D:374-459                                                        -----------------------------------------------------   ----------------- Pfam domains (2)
           Pfam domains (3) ---------------------      -------Mur_ligase-2xjaD03 D:61-139                                                    -----------Mur_ligase_M-2xjaD11 D:151-355                                                                                                                                                                               ------------------Mur_ligase_C-2xjaD07 D:374-459                                                        -----------------------------------------------------   ----------------- Pfam domains (3)
           Pfam domains (4) ---------------------      -------Mur_ligase-2xjaD04 D:61-139                                                    -----------Mur_ligase_M-2xjaD12 D:151-355                                                                                                                                                                               ------------------Mur_ligase_C-2xjaD08 D:374-459                                                        -----------------------------------------------------   ----------------- Pfam domains (4)
         Sec.struct. author .......eehhhhhhhhh...------.......ee.eee.hhhhh...eeeee.......hhhhhhhhhhh...eeeehhhhhhhhh......eee......hhhhhhhhhh.hhhhhheeeeee...hhhhhhhhhhhhhhhh...eeeee..eeee............hhhhhhhhhhhhhhh...eeeee.hhhhhhh.........eeee............hhhhhhhhhhh...........eeeee..hhhhhhhhhhhh..eeee.......eeeeeeee.....eeeeee.....eeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......eee......eeeee...hhhhhhhhhhhh......eeeeeee.------hhhhhhhhhhhhh.eeeeee....---hhhhhhhhhhhhh.......eee..hhhhhhhhhhhhh....eeeee...........---...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xja D  27 RPNAVVGVRLAALADQVGAAL------RAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAkASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAG------KRAPMGRIAAQLADLVVVTDDNPR---PTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGG---RPFDDRVELAAALEALE 532
                                    36        46|      |56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     | 266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416    |    - |     436       446    |  456       466       476       486       496       506     | 516       526      
                                               47     54                                                                                                                                                                                                             262-KCX                                                                                                                                                        421    428                    451 455                                                      512 516                


Chain D from PDB  Type:PROTEIN  Length:488
 aligned with MURE_MYCTU | P9WJL3 from UniProtKB/Swiss-Prot  Length:535

    Alignment length:506
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
           MURE_MYCTU    27 RPNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALE 532
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------2xjaD02 D:142-375  [code=3.40.1190.10, no name defined]                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------      -------Mur_ligase-2xjaD01 D:61-139                                                    -----------Mur_ligase_M-2xjaD09 D:151-355                                                                                                                                                                               ------------------Mur_ligase_C-2xjaD05 D:374-459                                                        -----------------------------------------------------   ----------------- Pfam domains (1)
           Pfam domains (2) ---------------------      -------Mur_ligase-2xjaD02 D:61-139                                                    -----------Mur_ligase_M-2xjaD10 D:151-355                                                                                                                                                                               ------------------Mur_ligase_C-2xjaD06 D:374-459                                                        -----------------------------------------------------   ----------------- Pfam domains (2)
           Pfam domains (3) ---------------------      -------Mur_ligase-2xjaD03 D:61-139                                                    -----------Mur_ligase_M-2xjaD11 D:151-355                                                                                                                                                                               ------------------Mur_ligase_C-2xjaD07 D:374-459                                                        -----------------------------------------------------   ----------------- Pfam domains (3)
           Pfam domains (4) ---------------------      -------Mur_ligase-2xjaD04 D:61-139                                                    -----------Mur_ligase_M-2xjaD12 D:151-355                                                                                                                                                                               ------------------Mur_ligase_C-2xjaD08 D:374-459                                                        -----------------------------------------------------   ----------------- Pfam domains (4)
         Sec.struct. author .......eehhhhhhhhh...------.......ee.eee.hhhhh...eeeee.......hhhhhhhhhhh...eeeehhhhhhhhh......eee......hhhhhhhhhh.hhhhhheeeeee...hhhhhhhhhhhhhhhh...eeeee..eeee............hhhhhhhhhhhhhhh...eeeee.hhhhhhh.........eeee............hhhhhhhhhhh...........eeeee..hhhhhhhhhhhh..eeee.......eeeeeeee.....eeeeee.....eeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......eee......eeeee...hhhhhhhhhhhh......eeeeeee.------hhhhhhhhhhhhh.eeeeee....---hhhhhhhhhhhhh.......eee..hhhhhhhhhhhhh....eeeee...........---...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xja D  27 RPNAVVGVRLAALADQVGAAL------RAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAkASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLAHPDRRLAVVFGAG------KRAPMGRIAAQLADLVVVTDDNPR---PTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGG---RPFDDRVELAAALEALE 532
                                    36        46|      |56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     | 266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416    |    - |     436       446    |  456       466       476       486       496       506     | 516       526      
                                               47     54                                                                                                                                                                                                             262-KCX                                                                                                                                                        421    428                    451 455                                                      512 516
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XJA)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: Mur_ligase_C] (24)
(-)
Clan: no clan defined [family: Mur_ligase_M] (23)

(-) Gene Ontology  (15, 28)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (MURE_MYCTO | P9WJL2)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0008765    UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity    Catalysis of the reaction: meso-2,6-diaminopimelate + ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate = ADP + 2 H(+) + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminoheptanedioate.
    GO:0016881    acid-amino acid ligase activity    Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0071555    cell wall organization    A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
    GO:0009252    peptidoglycan biosynthetic process    The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D   (MURE_MYCTU | P9WJL3)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0008765    UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity    Catalysis of the reaction: meso-2,6-diaminopimelate + ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate = ADP + 2 H(+) + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminoheptanedioate.
    GO:0016881    acid-amino acid ligase activity    Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0071555    cell wall organization    A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
    GO:0009252    peptidoglycan biosynthetic process    The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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(-) Related Entries Specified in the PDB File

2wtz MURE LIGASE OF MYCOBACTERIUM TUBERCULOSIS