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(-) Description

Title :  VCBM60 IN COMPLEX WITH CELLOBIOSE
 
Authors :  C. Montanier, J. E. Flint, D. N. Bolam, H. Xie, Z. Liu, A. Rogowski, D. P. W D. Nurizzo, S. M. Roberts, J. P. Turkenburg, G. J. Davies, H. J. Gilbert
Date :  21 May 10  (Deposition) - 16 Jun 10  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.19
Chains :  Asym./Biol. Unit :  A
Keywords :  Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Montanier, J. E. Flint, D. N. Bolam, H. Xie, Z. Liu, A. Rogowski, D. P. Weiner, S. Ratnaparkhe, D. Nurizzo, S. M. Roberts, J. P. Turkenburg, G. J. Davies, H. J. Gilbert
Circular Permutation Provides An Evolutionary Link Between Two Families Of Calcium-Dependent Carbohydrate Binding Modules.
J. Biol. Chem. V. 285 31742 2010
PubMed-ID: 20659893  |  Reference-DOI: 10.1074/JBC.M110.142133

(-) Compounds

Molecule 1 - CARBOHYDRATE BINDING MODULE
    Chains: A
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: ENVIRONMENTAL ISOLATE
    Synonym: VCBM60

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CBI1Ligand/IonCELLOBIOSE
3GOL1Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:55 , ARG A:59 , ASP A:60 , HIS A:100 , CBI A:1113 , HOH A:2100BINDING SITE FOR RESIDUE CA A1111
2AC2SOFTWAREASP A:64 , GLN A:74 , GLU A:76 , GLU A:97 , HOH A:2110BINDING SITE FOR RESIDUE CA A1112
3AC3SOFTWAREASP A:55 , ASP A:60 , TRP A:85 , HIS A:100 , CA A:1111 , HOH A:2169 , HOH A:2170 , HOH A:2171BINDING SITE FOR RESIDUE CBI A1113
4AC4SOFTWAREGLN A:71 , THR A:72 , SER A:79 , ASN A:81 , GLY A:91 , SER A:93 , GLY A:94 , HOH A:2121BINDING SITE FOR RESIDUE GOL A1114

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:90 -A:101

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XFD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XFD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XFD)

(-) Exons   (0, 0)

(no "Exon" information available for 2XFD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with D7GNB4_9BACT | D7GNB4 from UniProtKB/TrEMBL  Length:111

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
         D7GNB4_9BACT     2 NSITVRARGVNGQESVSLQVGGTTVQTWTLTTAMQDYTASTSLTGEIRVAFTNDATGRDVQVDYIVVNGQTRQAENQSVNTGVWANNQCGGSGNSEWLHCNGYISFGNV 110
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....eeeeee..eeeeeee.....eeeeee.....eeeeee........eeeeeeee..eeee.hhh......ee..ee.......ee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2xfd A   2 NSITVRARGVNGQESVSLQVGGTTVQTWTLTTAMQDYTASTSLTGEIRVAFTNDATGRDVQVDYIVVNGQTRQAENQSVNTGVWANNQCGGSGNSEWLHCNGYISFGNV 110
                                    11        21        31        41        51        61        71        81        91       101
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XFD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XFD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2XFD)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (D7GNB4_9BACT | D7GNB4)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  2xfd
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D7GNB4_9BACT | D7GNB4: 2xfe

(-) Related Entries Specified in the PDB File

2xfe VCBM60 IN COMPLEX WITH GALACTOBIOSE
2xhh CIRCULAR PERMUTATION PROVIDES AN EVOLUTIONARY LINK BETWEEN TWO FAMILIES OF CALCIUM-DEPENDENT CARBOHYDRATE BINDING MODULES
2xhj CIRCULAR PERMUTATION PROVIDES AN EVOLUTIONARY LINK BETWEEN TWO FAMILIES OF CALCIUM-DEPENDENT CARBOHYDRATE BINDING MODULES. SEMET FORM OF VCBM60.