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(-) Description

Title :  NOCARDIA FARCINICA MALEATE CIS-TRANS ISOMERASE BOUND TO TRIS
 
Authors :  F. Fisch, C. Martinez-Fleites, N. Baudendistel, B. Hauer, J. P. Turken S. Hart, N. C. Bruce, G. Grogan
Date :  13 May 10  (Deposition) - 18 Aug 10  (Release) - 03 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Fisch, C. M. Fleites, M. Delenne, N. Baudendistel, B. Hauer, J. P. Turkenburg, S. Hart, N. C. Bruce, G. Grogan
A Covalent Succinylcysteine-Like Intermediate In The Enzyme-Catalyzed Transformation Of Maleate To Fumarate By Maleate Isomerase.
J. Am. Chem. Soc. V. 132 11455 2010
PubMed-ID: 20677745  |  Reference-DOI: 10.1021/JA1053576

(-) Compounds

Molecule 1 - PUTATIVE MALEATE ISOMERASE
    Chains: A, B, C, D
    EC Number: 5.2.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-YSBLIC3C
    Expression System Strain: ROSETTA2 (DE3)
    Expression System Taxid: 562
    Organism Scientific: NOCARDIA FARCINICA
    Organism Taxid: 247156
    Other Details: NOCARDIA FARCINICA GENOME PROJECT
    Strain: IFM 10152

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 
Biological Unit 3 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:11 , ASN A:14 , MET A:42 , MET A:53 , LEU A:77 , VAL A:78 , TYR A:133 , ASN A:163 , CYS A:194 , VAL A:195BINDING SITE FOR RESIDUE TRS A 300
2AC2SOFTWAREGLU B:148 , GLU C:148 , HOH C:2011BINDING SITE FOR RESIDUE CA B1246
3AC3SOFTWAREPRO D:11 , ASN D:14 , CYS D:76 , LEU D:77 , VAL D:78 , ALA D:79 , TYR D:133 , ASN D:163 , CYS D:194 , VAL D:195 , GLN D:196BINDING SITE FOR RESIDUE TRS D 300
4AC4SOFTWAREGLU A:148 , HOH A:2023 , HOH A:2027 , GLU D:148 , HOH D:2007 , HOH D:2008BINDING SITE FOR RESIDUE CA D1247

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XEC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XEC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XEC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XEC)

(-) Exons   (0, 0)

(no "Exon" information available for 2XEC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with Q5YXQ1_NOCFA | Q5YXQ1 from UniProtKB/TrEMBL  Length:251

    Alignment length:246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      
         Q5YXQ1_NOCFA     3 IRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMPSLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAGRLLRQDSAV 248
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..eeee..hhhhhh...hhhhhhhhhhhhhhhh.....eeeehhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhh..eeeeeee....hhhhhh..hhhhhhhhhhh.......eeeee......hhhhhhhhhhhhh..eeehhhhhhhhhhhhh.........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2xec A   3 IRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMPSLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAGRLLRQDSAV 248
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      


Chain B from PDB  Type:PROTEIN  Length:245
 aligned with Q5YXQ1_NOCFA | Q5YXQ1 from UniProtKB/TrEMBL  Length:251

    Alignment length:245
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240     
         Q5YXQ1_NOCFA     1 MGIRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMPSLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAGRLLRQD 245
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhh...hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhh..eeeeeee....hhhhhh..hhhhhhhhhhh.......eeeee......hhhhhhhhhhhhh..eeehhhhhhhhhhhhh.........hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xec B   1 MGIRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMPSLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAGRLLRQD 245
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240     


Chain C from PDB  Type:PROTEIN  Length:243
 aligned with Q5YXQ1_NOCFA | Q5YXQ1 from UniProtKB/TrEMBL  Length:251

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
         Q5YXQ1_NOCFA     3 IRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMPSLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAGRLLRQD 245
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhh....hhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhh..eeeeeee....hhhhhh..hhhhhhhhhhhh......eeeee......hhhhhhhhhhhhh..eeehhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xec C   3 IRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMPSLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAGRLLRQD 245
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   


Chain D from PDB  Type:PROTEIN  Length:245
 aligned with Q5YXQ1_NOCFA | Q5YXQ1 from UniProtKB/TrEMBL  Length:251

    Alignment length:245
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241     
         Q5YXQ1_NOCFA     2 GIRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMPSLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAGRLLRQDS 246
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----Asp_Glu_race-2xecD01 D:6-226                                                                                                                                                                                                 -------------------- Pfam domains (1)
           Pfam domains (2) ----Asp_Glu_race-2xecD02 D:6-226                                                                                                                                                                                                 -------------------- Pfam domains (2)
           Pfam domains (3) ----Asp_Glu_race-2xecD03 D:6-226                                                                                                                                                                                                 -------------------- Pfam domains (3)
           Pfam domains (4) ----Asp_Glu_race-2xecD04 D:6-226                                                                                                                                                                                                 -------------------- Pfam domains (4)
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhh.....eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhh...hhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh..eeeeeee....hhhhhhh.hhhhhhhhhhhh......eeeee......hhhhhhhhhhhhh..eeehhhhhhhhhhhhh........hhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xec D   2 GIRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCCVQMPSLPLVETAEREFGIPVLSAATAGAYSILRSLDLPVAVPGAGRLLRQDS 246
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XEC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XEC)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Asp-glut_race (23)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q5YXQ1_NOCFA | Q5YXQ1)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0050076    maleate isomerase activity    Catalysis of the reaction: maleate = fumarate.

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