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(-) Description

Title :  NON-CELLULOSOMAL COHESIN FROM THE HYPERTHERMOPHILIC ARCHAEON ARCHAEOGLOBUS FULGIDUS
 
Authors :  M. Voronov-Goldman, R. Lamed, I. Noach, I. Borovok, M. Kwiat, S. Rosenh L. J. W. Shimon, E. A. Bayer, F. Frolow
Date :  02 May 10  (Deposition) - 26 May 10  (Release) - 15 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Archaeal Protein, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Voronov-Goldman, R. Lamed, I. Noach, I. Borovok, M. Kwiat, S. Rosenheck, L. J. W. Shimon, E. A. Bayer, F. Frolow
Non-Cellulosomal Cohesin From The Hyperthermophilic Archaeo Archaeoglobus Fulgidus
Proteins V. 79 50 2011
PubMed-ID: 20954171  |  Reference-DOI: 10.1002/PROT.22857
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COHESIN
    Atcc: 49558
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: DE3
    Expression System Taxid: 562
    Expression System Variant: B834
    Fragment: ORF 2375, RESIDUES 278-433
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234
    Other Details: COHESIN MODULE OF ORF 2375
    Other Details - Source: GERMAN COLLECTION OF MICROORGANISMS(DSM)
    Strain: 4304

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2MG1Ligand/IonMAGNESIUM ION
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION
3SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:131 , ILE A:135 , VAL A:143BINDING SITE FOR RESIDUE CL A1667
2AC2SOFTWAREASP A:139 , HOH A:2097BINDING SITE FOR RESIDUE MG A1669
3AC3SOFTWAREASP A:31 , LYS A:32BINDING SITE FOR RESIDUE SO4 A1670

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XDH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XDH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
 aligned with O30295_ARCFU | O30295 from UniProtKB/TrEMBL  Length:506

    Alignment length:163
                                   286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436   
         O30295_ARCFU   277 PKTTIIAGSAEAPQGSDIQVPVKIENADKVGSINLILSYPNVLEVEDVLQGSLTQNSLFDYNVEGNQIKVGIADSNGISGDGSLFYVKFRVTGNEKAEQAENVKGKLRGLGQQLSEITLRNSHALTLQGIEIYDIDGNSVKVATINGTFRIVSQEEANKGDVN 439
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --Cohesin-2xdhA01 A:6-145                                                                                                                     --------------------- Pfam domains
         Sec.struct. author ..eeeee..eee....eeeeeeeeeeeeeeeeeeeeee....eeeeeeee.......eeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee.-------------------------.....eeeeeeeeeeee.......eeee.eeeee....hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xdh A   4 AKTTIIAGSAEAPQGSDIQVPVKIENADKVGSINLILSYPNVLEVEDVLQGSLTQNSLFDYQVEGNQIKVGIADSNGISGDGSLFYVKFRVT-------------------------TLRNSHALTLQGIEIYDIDGNSVKVATINGTFRIVSQEEAHHHHHH 166
                                    13        23        33        43        53        63        73        83        93 |       -         -       123       133       143       153       163   
                                                                                                                      95                       121
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XDH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XDH)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: CBD (21)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (O30295_ARCFU | O30295)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0000272    polysaccharide catabolic process    The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

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