Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  MEMBRANE-EMBEDDED MONOFUNCTIONAL GLYCOSYLTRANSFERASE WAAA OF AQUIFEX AEOLICUS, COMPLEX WITH CMP
 
Authors :  H. Schmidt, G. Hansen, R. Hilgenfeld, U. Mamat, J. R. Mesters
Date :  26 Apr 10  (Deposition) - 11 May 11  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Biol. Unit 5:  C  (1x)
Biol. Unit 6:  D  (1x)
Keywords :  Transferase, Kdta, Gsea, Glycosyltransferase Superfamily B, Gt-B (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Schmidt, G. Hansen, S. Singh, A. Hanuszkiewicz, B. Lindner, K. Fukase, R. W. Woodard, O. Holst, R. Hilgenfeld, U. Mamat, J. R. Mesters
Structural And Mechanistic Analysis Of The Membrane- Embedded Glycosyltransferase Waaa Required For Lipopolysaccharide Synthesis.
Proc. Natl. Acad. Sci. Usa V. 109 6253 2012
PubMed-ID: 22474366  |  Reference-DOI: 10.1073/PNAS.1119894109
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 3-DEOXY-D-MANNO-2-OCTULOSONIC ACID TRANSFERASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUM216
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: SI-216
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 63363
    Strain: AQ_326
    Synonym: KDO-TRANSFERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D
Biological Unit 3 (1x): A   
Biological Unit 4 (1x):  B  
Biological Unit 5 (1x):   C 
Biological Unit 6 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 18)

Asymmetric Unit (5, 18)
No.NameCountTypeFull Name
11PE4Ligand/IonPENTAETHYLENE GLYCOL
2BME4Ligand/IonBETA-MERCAPTOETHANOL
3C5P4Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
4CIT5Ligand/IonCITRIC ACID
5CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (4, 9)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2BME2Ligand/IonBETA-MERCAPTOETHANOL
3C5P2Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
4CIT3Ligand/IonCITRIC ACID
5CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (4, 8)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2BME2Ligand/IonBETA-MERCAPTOETHANOL
3C5P2Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
4CIT2Ligand/IonCITRIC ACID
5CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (3, 5)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2BME-1Ligand/IonBETA-MERCAPTOETHANOL
3C5P1Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
4CIT2Ligand/IonCITRIC ACID
5CL-1Ligand/IonCHLORIDE ION
Biological Unit 4 (4, 4)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3C5P1Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
4CIT1Ligand/IonCITRIC ACID
5CL-1Ligand/IonCHLORIDE ION
Biological Unit 5 (3, 4)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2BME2Ligand/IonBETA-MERCAPTOETHANOL
3C5P1Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
4CIT1Ligand/IonCITRIC ACID
5CL-1Ligand/IonCHLORIDE ION
Biological Unit 6 (4, 4)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3C5P1Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
4CIT1Ligand/IonCITRIC ACID
5CL-1Ligand/IonCHLORIDE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:182 , VAL A:210 , PRO A:211 , ARG A:212 , PHE A:247 , GLY A:248 , ILE A:249 , LEU A:250 , HIS A:272 , ASN A:273 , GLU A:276 , HOH A:2033 , HOH A:2034BINDING SITE FOR RESIDUE C5P A 400
02AC2SOFTWAREPHE A:3 , VAL A:5 , ARG A:8 , PHE A:53 , PRO A:55 , CIT A:1356 , ARG C:99 , GLU C:100 , PHE C:101BINDING SITE FOR RESIDUE 1PE A1353
03AC3SOFTWAREARG A:99 , GLU A:100 , PHE A:101 , PHE C:3 , VAL C:5 , ARG C:8 , PHE C:53 , PRO C:55 , CIT C:1353BINDING SITE FOR RESIDUE 1PE A1354
04AC4SOFTWAREILE A:183 , HIS A:184 , THR A:185 , ARG A:212 , HIS A:213 , ASN A:216 , PHE A:220 , HIS C:184 , THR C:185 , HIS C:213 , ASN C:216BINDING SITE FOR RESIDUE CIT A1355
05AC5SOFTWAREGLN A:2 , PHE A:3 , GLU A:4 , VAL A:5 , LEU A:6 , 1PE A:1353 , ARG C:99 , LYS C:121 , SER C:123 , ILE C:125BINDING SITE FOR RESIDUE CIT A1356
06AC6SOFTWARESER B:182 , VAL B:210 , PRO B:211 , ARG B:212 , PHE B:247 , GLY B:248 , ILE B:249 , LEU B:250 , LYS B:251 , HIS B:272 , ASN B:273 , GLU B:276 , HOH B:2020 , HOH B:2028 , HOH B:2029BINDING SITE FOR RESIDUE C5P B 400
07AC7SOFTWAREARG B:99 , GLU B:100 , PHE B:101 , TRP B:102 , PHE D:3 , VAL D:5 , ARG D:8 , PHE D:53 , PRO D:55 , CIT D:1354BINDING SITE FOR RESIDUE 1PE B1353
08AC8SOFTWAREGLN B:2 , PHE B:3 , GLU B:4 , VAL B:5 , LEU B:6 , ARG D:99 , LYS D:121 , SER D:123 , 1PE D:1353BINDING SITE FOR RESIDUE CIT B1354
09AC9SOFTWAREPHE B:9 , ARG B:84BINDING SITE FOR RESIDUE BME B1355
10BC1SOFTWARESER C:182 , VAL C:210 , PRO C:211 , ARG C:212 , ILE C:214 , PHE C:247 , GLY C:248 , ILE C:249 , LEU C:250 , LYS C:251 , HIS C:272 , ASN C:273 , GLU C:276 , HOH C:2025 , HOH C:2026 , HOH C:2027BINDING SITE FOR RESIDUE C5P C 400
11BC2SOFTWAREARG A:99 , LYS A:121 , SER A:123 , ILE A:125 , 1PE A:1354 , HOH A:2017 , GLN C:2 , PHE C:3 , GLU C:4 , VAL C:5 , LEU C:6BINDING SITE FOR RESIDUE CIT C1353
12BC3SOFTWAREPHE C:9 , PHE C:80BINDING SITE FOR RESIDUE BME C1354
13BC4SOFTWARESER D:182 , VAL D:210 , PRO D:211 , ARG D:212 , PHE D:247 , GLY D:248 , ILE D:249 , LEU D:250 , LYS D:251 , HIS D:272 , ASN D:273 , GLU D:276 , HOH D:2024 , HOH D:2025 , HOH D:2026BINDING SITE FOR RESIDUE C5P D 400
14BC5SOFTWAREPHE B:3 , VAL B:5 , ARG B:8 , PHE B:53 , PRO B:55 , CIT B:1354 , ARG D:99 , GLU D:100 , PHE D:101 , TRP D:102BINDING SITE FOR RESIDUE 1PE D1353
15BC6SOFTWARELYS B:121 , SER B:123 , ILE B:125 , 1PE B:1353 , GLN D:2 , PHE D:3 , GLU D:4 , VAL D:5 , LEU D:6BINDING SITE FOR RESIDUE CIT D1354
16BC7SOFTWAREPHE D:10 , PHE D:80 , ARG D:84BINDING SITE FOR RESIDUE BME D1355

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:18 -A:70
2A:158 -A:341
3A:165 -A:279
4B:18 -B:70
5B:158 -B:341
6B:165 -B:279
7C:18 -C:70
8C:158 -C:341
9C:165 -C:279
10D:18 -D:70
11D:158 -D:341
12D:165 -D:279

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XCU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XCU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XCU)

(-) Exons   (0, 0)

(no "Exon" information available for 2XCU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:353
 aligned with KDTA_AQUAE | O66663 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:353
                             1                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349   
           KDTA_AQUAE     - -MQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG 352
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.hhhhhhhh..eeee..hhhhhhhhhhhhhhhh....eeeee...hhhhhhhh......eeee....hhhhhhhhhhhhh..eeeee....hhhhhhhh...eeeeee....hhhhhhhhh...eeee.hhhhhhhhhh.....eee..hhhhh............eeeeeeehhhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhh...eee.......eee.....hhhhhhhhh.eeee...........hhhhhh....eee......hhhhhhhhhhh..eee..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xcu A   0 HMQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG 352
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349   


Chain B from PDB  Type:PROTEIN  Length:352
 aligned with KDTA_AQUAE | O66663 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
           KDTA_AQUAE     1 MQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG 352
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh.hhhhhhhh..eeee..hhhhhhhhhhhhhhhh....eeeee...hhhhhhhh......eeee....hhhhhhhhhhhhh..eeeee....hhhhhhhh...eeeeee....hhhhhhhhhhh.eeee.hhhhhhhhhh.....eee..hhhhh...........eeeeeeeehhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhh...eee.......eee.....hhhhhh..eeeeee...........hhhhhh....eee......hhhhhhhhhhh..eee..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xcu B   1 MQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain C from PDB  Type:PROTEIN  Length:353
 aligned with KDTA_AQUAE | O66663 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:353
                             1                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349   
           KDTA_AQUAE     - -MQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG 352
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.hhhhhhhh..eeee..hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhh..eeeee....hhhhhhhh...eeeeee....hhhhhhhhhhh.eeee.hhhhhhhhhh.....eee..hhhhh...........eeeeeeeehhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhh...eee.......eee.....hhhhhh..eeeeee...........hhhhhhh...eee......hhhhhhhhhhh..eee..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xcu C   0 HMQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG 352
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349   


Chain D from PDB  Type:PROTEIN  Length:352
 aligned with KDTA_AQUAE | O66663 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
           KDTA_AQUAE     1 MQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG 352
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh.hhhhhhhh..eeee..hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhh...eeee....hhhhhhhh...eeeeee....hhhhhhhhh...eeee.hhhhhhhhhh.....eee..hhhhh............eeeeeeehhhhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhhh...eee.......eee.....hhhhhhhhh.eeee...........hhhhhh....eee...hhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xcu D   1 MQFEVLKRFFPKESLKNCKGALWVHTASIGEFNTFLPILKELKREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREFWPSLIIFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFSCGNLKFICQKGKGIKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRG 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XCU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XCU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2XCU)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (KDTA_AQUAE | O66663)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009245    lipid A biosynthetic process    The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.
    GO:0009244    lipopolysaccharide core region biosynthetic process    The chemical reactions and pathways resulting in the formation of the core region of bacterial lipopolysaccharides, which contains ten saccharide residues.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    1PE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    BME  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    C5P  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CIT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2xcu)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2xcu
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  KDTA_AQUAE | O66663
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  KDTA_AQUAE | O66663
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KDTA_AQUAE | O66663: 2xci

(-) Related Entries Specified in the PDB File

2xci MEMBRANE-EMBEDDED MONOFUNCTIONAL GLYCOSYLTRANSFERASE WAAA OF AQUIFEX AEOLICUS, SUBSTRATE-FREE FORM