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(-) Description

Title :  STRUCTURE OF GLYCOSOMAL GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM TRYPANOSOMA BRUCEI DETERMINED FROM LAUE DATA
 
Authors :  F. M. D. Vellieux, J. Hajdu, W. G. J. Hol
Date :  16 Dec 09  (Deposition) - 22 Dec 09  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,O,P,Q,R
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  O,P,Q,R  (1x)
Keywords :  Glycolysis, Glycosome, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. M. D. Vellieux, J. Hajdu, C. L. Verlinde, H. Groendijk, R. J. Read, T. J. Greenhough, J. W. Campbell, K. H. Kalk, J. A. Littlechild, H. C. Watson
Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Brucei Determined From Laue Data.
Proc. Natl. Acad. Sci. Usa V. 90 2355 1993
PubMed-ID: 8460146  |  Reference-DOI: 10.1073/PNAS.90.6.2355
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, GLYCOSOMAL
    Chains: A, B, O, P, Q, R
    EC Number: 1.2.1.12
    Organism Scientific: TRYPANOSOMA BRUCEI BRUCEI
    Organism Taxid: 5702
    Synonym: GADPH

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABOPQR
Biological Unit 1 (2x): AB    
Biological Unit 2 (1x):   OPQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1NAD6Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO412Ligand/IonSULFATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO48Ligand/IonSULFATE ION
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO48Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:196 , THR A:198 , NAD A:361BINDING SITE FOR RESIDUE SO4 A 359
02AC2SOFTWARESER A:164 , THR A:225 , GLY A:226 , ALA A:227BINDING SITE FOR RESIDUE SO4 A 360
03AC3SOFTWAREGLY A:8 , GLY A:10 , ARG A:11 , ILE A:12 , ASP A:37 , MET A:38 , ALA A:89 , GLN A:90 , SER A:109 , THR A:110 , GLY A:111 , LEU A:112 , SER A:133 , ALA A:134 , CYS A:165 , ALA A:197 , ASN A:334 , SO4 A:359BINDING SITE FOR RESIDUE NAD A 361
04AC4SOFTWARETHR B:196 , THR B:198 , ARG B:248BINDING SITE FOR RESIDUE SO4 B 359
05AC5SOFTWARESER B:164 , THR B:225 , GLY B:226 , ALA B:227BINDING SITE FOR RESIDUE SO4 B 360
06AC6SOFTWAREASN B:7 , GLY B:8 , GLY B:10 , ARG B:11 , ILE B:12 , ASP B:37 , MET B:38 , ALA B:89 , GLN B:90 , SER B:109 , THR B:110 , GLY B:111 , LEU B:112 , SER B:133 , ALA B:134 , ALA B:197 , ASN B:334BINDING SITE FOR RESIDUE NAD B 361
07AC7SOFTWARETHR O:196 , THR O:198 , ARG O:248BINDING SITE FOR RESIDUE SO4 O 359
08AC8SOFTWARESER O:164 , THR O:225 , GLY O:226 , ALA O:227BINDING SITE FOR RESIDUE SO4 O 360
09AC9SOFTWAREGLY O:8 , GLY O:10 , ARG O:11 , ILE O:12 , ASP O:37 , ALA O:89 , GLN O:90 , SER O:109 , THR O:110 , GLY O:111 , SER O:133 , ALA O:134 , CYS O:165 , ALA O:197 , ASN O:334 , TYR O:338BINDING SITE FOR RESIDUE NAD O 361
10BC1SOFTWARETHR P:196 , THR P:198 , ARG P:248BINDING SITE FOR RESIDUE SO4 P 359
11BC2SOFTWARESER P:164 , THR P:225BINDING SITE FOR RESIDUE SO4 P 360
12BC3SOFTWAREGLY P:8 , GLY P:10 , ARG P:11 , ILE P:12 , VAL P:36 , ASP P:37 , MET P:38 , ALA P:89 , GLN P:90 , SER P:109 , THR P:110 , GLY P:111 , SER P:133 , ASN P:334 , TYR P:338BINDING SITE FOR RESIDUE NAD P 361
13BC4SOFTWARETHR Q:196 , THR Q:198 , ARG Q:248BINDING SITE FOR RESIDUE SO4 Q 359
14BC5SOFTWARESER Q:164 , THR Q:225 , GLY Q:226 , ALA Q:227BINDING SITE FOR RESIDUE SO4 Q 360
15BC6SOFTWAREGLY Q:8 , GLY Q:10 , ARG Q:11 , ILE Q:12 , VAL Q:36 , ASP Q:37 , MET Q:38 , GLN Q:90 , SER Q:109 , THR Q:110 , GLY Q:111 , SER Q:133 , CYS Q:165 , ALA Q:197 , ASN Q:334 , TYR Q:338BINDING SITE FOR RESIDUE NAD Q 361
16BC7SOFTWARETHR R:196 , THR R:198 , ARG R:248 , NAD R:361BINDING SITE FOR RESIDUE SO4 R 359
17BC8SOFTWARESER R:164 , THR R:225 , GLY R:226 , ALA R:227BINDING SITE FOR RESIDUE SO4 R 360
18BC9SOFTWAREGLY R:8 , GLY R:10 , ARG R:11 , ILE R:12 , VAL R:36 , ASP R:37 , MET R:38 , ALA R:89 , GLN R:90 , SER R:109 , THR R:110 , SER R:133 , ALA R:134 , CYS R:165 , ALA R:197 , ASN R:334 , TYR R:338 , SO4 R:359BINDING SITE FOR RESIDUE NAD R 361

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2X0N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2X0N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2X0N)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3PG_TRYBB164-171
 
 
 
 
 		  6A:163-170
B:163-170
O:163-170
P:163-170
Q:163-170
R:163-170
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3PG_TRYBB164-171
 
 
 
 
 		  4A:163-170
B:163-170
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3PG_TRYBB164-171
 
 
 
 
 		  4-
-
O:163-170
P:163-170
Q:163-170
R:163-170

(-) Exons   (0, 0)

(no "Exon" information available for 2X0N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
 aligned with G3PG_TRYBB | P22512 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:358
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351        
           G3PG_TRYBB     2 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 359
               SCOP domains d2x0na1 A:1-164,A:334-358 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                          d2x0na2 A:165-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                       d2x0na1 A:1-164,A:334-358 SCOP domains
               CATH domains 2x0nA01 A:1-163,A:335-354 NAD(P)-binding Rossmann-like Domain                                                                                                      2x0nA02 A:164-334 Dihydrodipicolinate Reductase; domain 2                                                                                                                  2x0nA01             ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh............ee..........eeee..eeeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee........ee................eee..hhhhhhhhhhhhhhhhh.....eeeeeeee................hhhhhhhhhh.eeee.hhhhhhhhhhhhhh..eeeeeee......eeeeeeee.....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeeehhhhhh........eeeeeeee..hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0n A   1 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain B from PDB  Type:PROTEIN  Length:358
 aligned with G3PG_TRYBB | P22512 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:358
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351        
           G3PG_TRYBB     2 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 359
               SCOP domains d2x0nb1 B:1-164,B:334-358 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                          d2x0nb2 B:165-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                       d2x0nb1 B:1-164,B:334-358 SCOP domains
               CATH domains 2x0nB01 B:1-163,B:335-354 NAD(P)-binding Rossmann-like Domain                                                                                                      2x0nB02 B:164-334 Dihydrodipicolinate Reductase; domain 2                                                                                                                  2x0nB01             ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh............ee..........eeee..eeeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhh.....eeeeeeeee..............hhhhhh.hhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeeehhhhhhh.......eeeeeeee..hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0n B   1 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain O from PDB  Type:PROTEIN  Length:358
 aligned with G3PG_TRYBB | P22512 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:358
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351        
           G3PG_TRYBB     2 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 359
               SCOP domains d2x0no1 O:1-164,O:334-358 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                          d2x0no2 O:165-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                       d2x0no1 O:1-164,O:334-358 SCOP domains
               CATH domains 2x0nO01 O:1-163,O:335-354 NAD(P)-binding Rossmann-like Domain                                                                                                      2x0nO02 O:164-334 Dihydrodipicolinate Reductase; domain 2                                                                                                                  2x0nO01             ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh..........eeee..........eeee..eeeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhh.....eeeeeeeee...............hhhhh.hhhh.eeee.hhhhhhhhhhhhhh....eeeeee.....eeeeeeee.....hhhhhhhhhhhhhh......eeee....hhhhhh.....eeeehhhhhhh.......eeeeeeee..hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0n O   1 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain P from PDB  Type:PROTEIN  Length:358
 aligned with G3PG_TRYBB | P22512 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:358
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351        
           G3PG_TRYBB     2 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 359
               SCOP domains d2x0np1 P:1-164,P:334-358 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                          d2x0np2 P:165-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                       d2x0np1 P:1-164,P:334-358 SCOP domains
               CATH domains 2x0nP01 P:1-163,P:335-354 NAD(P)-binding Rossmann-like Domain                                                                                                      2x0nP02 P:164-334 Dihydrodipicolinate Reductase; domain 2                                                                                                                  2x0nP01             ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh............ee..........eeee..eeeeeee...hhhhhhhhhhh..eeee........hhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhh.....eeeeeeeee..............hhhhhh......eeee...hhhhhhhhhhhh..eeeeeeee.....eeeeeeee.....hhhhhhhhhhh.........eeee....hhhhhh.....eeeehhhhhhh.......eeeeeeee..hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0n P   1 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain Q from PDB  Type:PROTEIN  Length:358
 aligned with G3PG_TRYBB | P22512 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:358
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351        
           G3PG_TRYBB     2 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 359
               SCOP domains d2x0nq1 Q:1-164,Q:334-358 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                          d2x0nq2 Q:165-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                       d2x0nq1 Q:1-164,Q:334-358 SCOP domains
               CATH domains 2x0nQ01 Q:1-163,Q:335-354 NAD(P)-binding Rossmann-like Domain                                                                                                      2x0nQ02 Q:164-334 Dihydrodipicolinate Reductase; domain 2                                                                                                                  2x0nQ01             ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh..........eeee..........eeee..eeeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhhh..eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhh.....eeeeeeeee..............hhhhhhhhhhh.eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhh.......eeee....hhhhhh.....eeeehhhhhhh.......eeeeeeee..hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0n Q   1 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain R from PDB  Type:PROTEIN  Length:358
 aligned with G3PG_TRYBB | P22512 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:358
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351        
           G3PG_TRYBB     2 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 359
               SCOP domains d2x0nr1 R:1-164,R:334-358 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                          d2x0nr2 R:165-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                       d2x0nr1 R:1-164,R:334-358 SCOP domains
               CATH domains 2x0nR01 R:1-163,R:335-354 NAD(P)-binding Rossmann-like Domain                                                                                                      2x0nR02 R:164-334 Dihydrodipicolinate Reductase; domain 2                                                                                                                  2x0nR01             ---- CATH domains
           Pfam domains (1) -Gp_dh_N-2x0nR07 R:2-165                                                                                                                                             ----Gp_dh_C-2x0nR01 R:170-332                                                                                                                                          -------------------------- Pfam domains (1)
           Pfam domains (2) -Gp_dh_N-2x0nR08 R:2-165                                                                                                                                             ----Gp_dh_C-2x0nR02 R:170-332                                                                                                                                          -------------------------- Pfam domains (2)
           Pfam domains (3) -Gp_dh_N-2x0nR09 R:2-165                                                                                                                                             ----Gp_dh_C-2x0nR03 R:170-332                                                                                                                                          -------------------------- Pfam domains (3)
           Pfam domains (4) -Gp_dh_N-2x0nR10 R:2-165                                                                                                                                             ----Gp_dh_C-2x0nR04 R:170-332                                                                                                                                          -------------------------- Pfam domains (4)
           Pfam domains (5) -Gp_dh_N-2x0nR11 R:2-165                                                                                                                                             ----Gp_dh_C-2x0nR05 R:170-332                                                                                                                                          -------------------------- Pfam domains (5)
           Pfam domains (6) -Gp_dh_N-2x0nR12 R:2-165                                                                                                                                             ----Gp_dh_C-2x0nR06 R:170-332                                                                                                                                          -------------------------- Pfam domains (6)
         Sec.struct. author .eeeeee...hhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhh............ee..........eeee..eeeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhh.....eeeeeeeee..............hhhhh.......eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhh.......eeee....hhhhhh.....eeeehhhhhhh.......eeeeeeee..hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0n R   1 TIKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRAAKL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: GADPH_aa-bio_dh (59)
(-)
Family: Gp_dh_C (38)
(-)
Trypanosoma brucei brucei (1)
1aGp_dh_C-2x0nR01R:170-332
1bGp_dh_C-2x0nR02R:170-332
1cGp_dh_C-2x0nR03R:170-332
1dGp_dh_C-2x0nR04R:170-332
1eGp_dh_C-2x0nR05R:170-332
1fGp_dh_C-2x0nR06R:170-332
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,O,P,Q,R   (G3PG_TRYBB | P22512)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0020015    glycosome    A membrane-bounded organelle found in organisms from the order Kinetoplastida that houses the enzymes of glycolysis.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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 Related Entries

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        G3PG_TRYBB | P22512: 3cvn

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