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(-) Description

Title :  CATALYTIC AND UBA DOMAIN OF KINASE MARK2/(PAR-1) K82R, T208E DOUBLE MUTANT
 
Authors :  S. Panneerselvam, A. Marx, E. -M. Mandelkow, E. Mandelkow
Date :  30 Nov 09  (Deposition) - 22 Dec 09  (Release) - 16 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  D,E  (1x)
Biol. Unit 2:  A,F  (1x)
Biol. Unit 3:  B,C  (1x)
Keywords :  Uba Domain, Transferase, Serine/Threonine-Protein Kinase, Signaling Protein, S/T Protein Kinase, Differentiation, Developmental Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Marx, C. Nugoor, S. Panneerselvam, E. Mandelkow
Structure And Function Of Polarity-Inducing Kinase Family Mark/Par-1 Within The Branch Of Ampk/Snf1- Related Kinases.
Faseb J. V. 24 1637 2010
PubMed-ID: 20071654  |  Reference-DOI: 10.1096/FJ.09-148064
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE MARK2
    ChainsA, B, C, D, E, F
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPDEST17
    Expression System StrainBL21AI
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentCATALYTIC AND UBA DOMAINS, RESIDUES 39-364
    MutationYES
    Organism CommonRAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymMAP/MICROTUBULE AFFINITY-REGULATING KINASE 2, ELKL MOTIF KINASE, EMK1, MARK2

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)   DE 
Biological Unit 2 (1x)A    F
Biological Unit 3 (1x) BC   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2WZJ)

(-) Sites  (0, 0)

(no "Site" information available for 2WZJ)

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:210 -F:210
2B:210 -C:210
3D:210 -E:210

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WZJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WZJ)

(-) PROSITE Motifs  (3, 18)

Asymmetric Unit (3, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.MARK2_RAT59-82
 
 
 
 
 
  6A:59-81
B:59-81
C:59-81
D:59-81
E:59-81
F:59-81
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.MARK2_RAT171-183
 
 
 
 
 
  6A:171-183
B:171-183
C:171-183
D:171-183
E:171-183
F:171-183
3UBAPS50030 Ubiquitin-associated domain (UBA) profile.MARK2_RAT323-362
 
 
 
 
 
  6A:323-362
B:323-362
C:323-362
D:323-362
E:323-362
F:323-362
Biological Unit 1 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.MARK2_RAT59-82
 
 
 
 
 
  2-
-
-
D:59-81
E:59-81
-
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.MARK2_RAT171-183
 
 
 
 
 
  2-
-
-
D:171-183
E:171-183
-
3UBAPS50030 Ubiquitin-associated domain (UBA) profile.MARK2_RAT323-362
 
 
 
 
 
  2-
-
-
D:323-362
E:323-362
-
Biological Unit 2 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.MARK2_RAT59-82
 
 
 
 
 
  2A:59-81
-
-
-
-
F:59-81
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.MARK2_RAT171-183
 
 
 
 
 
  2A:171-183
-
-
-
-
F:171-183
3UBAPS50030 Ubiquitin-associated domain (UBA) profile.MARK2_RAT323-362
 
 
 
 
 
  2A:323-362
-
-
-
-
F:323-362
Biological Unit 3 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.MARK2_RAT59-82
 
 
 
 
 
  2-
B:59-81
C:59-81
-
-
-
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.MARK2_RAT171-183
 
 
 
 
 
  2-
B:171-183
C:171-183
-
-
-
3UBAPS50030 Ubiquitin-associated domain (UBA) profile.MARK2_RAT323-362
 
 
 
 
 
  2-
B:323-362
C:323-362
-
-
-

(-) Exons   (10, 60)

Asymmetric Unit (10, 60)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000287631ENSRNOE00000431295chr1:210022099-21002201981MARK2_RAT1-18180--
1.2ENSRNOT000000287632ENSRNOE00000442142chr1:209972642-209972463180MARK2_RAT19-78606A:49-78 (gaps)
B:49-78 (gaps)
C:49-78 (gaps)
D:46-78 (gaps)
E:49-78 (gaps)
F:49-78 (gaps)
30
30
30
33
30
30
1.3ENSRNOT000000287633ENSRNOE00000206780chr1:209972235-20997218254MARK2_RAT79-96186A:79-96
B:79-96
C:79-96
D:79-96
E:79-96
F:79-96
18
18
18
18
18
18
1.4ENSRNOT000000287634ENSRNOE00000206781chr1:209969442-20996939449MARK2_RAT97-113176A:97-113
B:97-113
C:97-113
D:97-113
E:97-113
F:97-113
17
17
17
17
17
17
1.5ENSRNOT000000287635ENSRNOE00000206782chr1:209969130-20996906566MARK2_RAT113-135236A:113-135
B:113-135
C:113-135
D:113-135
E:113-135
F:113-135
23
23
23
23
23
23
1.6ENSRNOT000000287636ENSRNOE00000206783chr1:209968946-20996887671MARK2_RAT135-158246A:135-158
B:135-158
C:135-158
D:135-158
E:135-158
F:135-158
24
24
24
24
24
24
1.7ENSRNOT000000287637ENSRNOE00000206784chr1:209968661-20996860557MARK2_RAT159-177196A:159-177
B:159-177
C:159-177
D:159-177
E:159-177
F:159-177
19
19
19
19
19
19
1.8ENSRNOT000000287638ENSRNOE00000206785chr1:209967997-209967761237MARK2_RAT178-256796A:178-256
B:178-256
C:178-256
D:178-256
E:178-256
F:178-256
79
79
79
79
79
79
1.9ENSRNOT000000287639ENSRNOE00000206786chr1:209967144-209967025120MARK2_RAT257-296406A:257-296
B:257-296
C:257-296
D:257-296
E:257-296
F:257-296
40
40
40
40
40
40
1.10bENSRNOT0000002876310bENSRNOE00000206787chr1:209966915-209966816100MARK2_RAT297-330346A:297-330
B:297-330
C:297-330
D:297-330
E:297-330
F:297-330
34
34
34
34
34
34
1.11bENSRNOT0000002876311bENSRNOE00000206788chr1:209966731-209966619113MARK2_RAT330-367386A:330-363
B:330-363
C:330-363
D:330-363
E:330-363
F:330-363
34
34
34
34
34
34
1.12ENSRNOT0000002876312ENSRNOE00000206789chr1:209965747-209965615133MARK2_RAT368-412450--
1.13ENSRNOT0000002876313ENSRNOE00000206790chr1:209965379-209965207173MARK2_RAT412-469580--
1.14ENSRNOT0000002876314ENSRNOE00000206791chr1:209964998-20996490198MARK2_RAT470-502330--
1.16ENSRNOT0000002876316ENSRNOE00000206792chr1:209963423-209963166258MARK2_RAT502-588870--
1.17ENSRNOT0000002876317ENSRNOE00000369651chr1:209962194-20996216827MARK2_RAT588-597100--
1.18ENSRNOT0000002876318ENSRNOE00000206793chr1:209960262-20996021845MARK2_RAT597-612160--
1.19ENSRNOT0000002876319ENSRNOE00000206800chr1:209959623-209958925699MARK2_RAT612-7311200--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:310
 aligned with MARK2_RAT | O08679 from UniProtKB/Swiss-Prot  Length:722

    Alignment length:315
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
            MARK2_RAT    49 HIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wzjA01 A:4     9-131 Phosphorylase Kinase; domain 1                               2wzjA02 A:132-321 Transferase(Phosphotransferase) domain 1                                                                                                                                    2wzjA03 A:322-363                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.-----..eeeeee.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee....................hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhh..hhhhh..................hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------PROTEIN_KINASE_ATP      ----------------------------------------------------------------------------------------PROTEIN_KINAS-------------------------------------------------------------------------------------------------------------------------------------------UBA  PDB: A:323-362 UniProt: 323-362    - PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:49-78 (gaps) Exon 1.3          Exon 1.4         ---------------------Exon 1.6  PDB: A:135-158Exon 1.7           Exon 1.8  PDB: A:178-256 UniProt: 178-256                                      Exon 1.9  PDB: A:257-296                Exon 1.10b  PDB: A:297-330        --------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.5  PDB: A:113-13--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11b  PDB: A:330-363         Transcript 1 (2)
                 2wzj A  49 HIGNYRLLKTI-----AKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
                                    58|     | 68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
                                     59    65                                                                                                                                                                                                                                                                                                          

Chain B from PDB  Type:PROTEIN  Length:310
 aligned with MARK2_RAT | O08679 from UniProtKB/Swiss-Prot  Length:722

    Alignment length:315
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
            MARK2_RAT    49 HIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wzjB01 B:4     9-131 Phosphorylase Kinase; domain 1                               2wzjB02 B:132-321 Transferase(Phosphotransferase) domain 1                                                                                                                                    2wzjB03 B:322-363                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.-----..eeeeee.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........eee.....eee....................hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhh.hhhhh............hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------PROTEIN_KINASE_ATP      ----------------------------------------------------------------------------------------PROTEIN_KINAS-------------------------------------------------------------------------------------------------------------------------------------------UBA  PDB: B:323-362 UniProt: 323-362    - PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:49-78 (gaps) Exon 1.3          Exon 1.4         ---------------------Exon 1.6  PDB: B:135-158Exon 1.7           Exon 1.8  PDB: B:178-256 UniProt: 178-256                                      Exon 1.9  PDB: B:257-296                Exon 1.10b  PDB: B:297-330        --------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.5  PDB: B:113-13--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11b  PDB: B:330-363         Transcript 1 (2)
                 2wzj B  49 HIGNYRLLKTI-----AKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
                                    58|     | 68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
                                     59    65                                                                                                                                                                                                                                                                                                          

Chain C from PDB  Type:PROTEIN  Length:310
 aligned with MARK2_RAT | O08679 from UniProtKB/Swiss-Prot  Length:722

    Alignment length:315
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
            MARK2_RAT    49 HIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wzjC01 C:4     9-131 Phosphorylase Kinase; domain 1                               2wzjC02 C:132-321 Transferase(Phosphotransferase) domain 1                                                                                                                                    2wzjC03 C:322-363                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.-----.eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........eee.....eee....................hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhh........hhhhh............hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------PROTEIN_KINASE_ATP      ----------------------------------------------------------------------------------------PROTEIN_KINAS-------------------------------------------------------------------------------------------------------------------------------------------UBA  PDB: C:323-362 UniProt: 323-362    - PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:49-78 (gaps) Exon 1.3          Exon 1.4         ---------------------Exon 1.6  PDB: C:135-158Exon 1.7           Exon 1.8  PDB: C:178-256 UniProt: 178-256                                      Exon 1.9  PDB: C:257-296                Exon 1.10b  PDB: C:297-330        --------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.5  PDB: C:113-13--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11b  PDB: C:330-363         Transcript 1 (2)
                 2wzj C  49 HIGNYRLLKTI-----AKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
                                    58|     | 68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
                                     59    65                                                                                                                                                                                                                                                                                                          

Chain D from PDB  Type:PROTEIN  Length:313
 aligned with MARK2_RAT | O08679 from UniProtKB/Swiss-Prot  Length:722

    Alignment length:318
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355        
            MARK2_RAT    46 EQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2wzjD01 D:46-1     31 Phosphorylase Kinase; domain 1                                  2wzjD02 D:132-321 Transferase(Phosphotransferase) domain 1                                                                                                                                    2wzjD03 D:322-363                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee..eeeeee.-----..eeeeee.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........eee.....eee....................hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhh..................hhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------PROTEIN_KINASE_ATP      ----------------------------------------------------------------------------------------PROTEIN_KINAS-------------------------------------------------------------------------------------------------------------------------------------------UBA  PDB: D:323-362 UniProt: 323-362    - PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:46-78 (gaps)    Exon 1.3          Exon 1.4         ---------------------Exon 1.6  PDB: D:135-158Exon 1.7           Exon 1.8  PDB: D:178-256 UniProt: 178-256                                      Exon 1.9  PDB: D:257-296                Exon 1.10b  PDB: D:297-330        --------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------Exon 1.5  PDB: D:113-13--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11b  PDB: D:330-363         Transcript 1 (2)
                 2wzj D  46 EQPHIGNYRLLKTI-----AKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
                                    55   |    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355        
                                        59    65                                                                                                                                                                                                                                                                                                          

Chain E from PDB  Type:PROTEIN  Length:310
 aligned with MARK2_RAT | O08679 from UniProtKB/Swiss-Prot  Length:722

    Alignment length:315
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
            MARK2_RAT    49 HIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wzjE01 E:4     9-131 Phosphorylase Kinase; domain 1                               2wzjE02 E:132-321 Transferase(Phosphotransferase) domain 1                                                                                                                                    2wzjE03 E:322-363                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.-----..eeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...........eee.....eee....................hhhhhhhhhhh......hhhhhhhhhhhhhhhh.........hhhhhhhhhhhh........hhhhhhhhhhhh........hhhhhh.hhhhhh..................hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------PROTEIN_KINASE_ATP      ----------------------------------------------------------------------------------------PROTEIN_KINAS-------------------------------------------------------------------------------------------------------------------------------------------UBA  PDB: E:323-362 UniProt: 323-362    - PROSITE
           Transcript 1 (1) Exon 1.2  PDB: E:49-78 (gaps) Exon 1.3          Exon 1.4         ---------------------Exon 1.6  PDB: E:135-158Exon 1.7           Exon 1.8  PDB: E:178-256 UniProt: 178-256                                      Exon 1.9  PDB: E:257-296                Exon 1.10b  PDB: E:297-330        --------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.5  PDB: E:113-13--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11b  PDB: E:330-363         Transcript 1 (2)
                 2wzj E  49 HIGNYRLLKTI-----AKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
                                    58|     | 68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
                                     59    65                                                                                                                                                                                                                                                                                                          

Chain F from PDB  Type:PROTEIN  Length:310
 aligned with MARK2_RAT | O08679 from UniProtKB/Swiss-Prot  Length:722

    Alignment length:315
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
            MARK2_RAT    49 HIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wzjF01 F:4     9-131 Phosphorylase Kinase; domain 1                               2wzjF02 F:132-321 Transferase(Phosphotransferase) domain 1                                                                                                                                    2wzjF03 F:322-363                          CATH domains
           Pfam domains (1) ----Pkinase     -2wzjF01 F:53-304                                                                                                                                                                                                                               ----------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----Pkinase     -2wzjF02 F:53-304                                                                                                                                                                                                                               ----------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----Pkinase     -2wzjF03 F:53-304                                                                                                                                                                                                                               ----------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----Pkinase     -2wzjF04 F:53-304                                                                                                                                                                                                                               ----------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----Pkinase     -2wzjF05 F:53-304                                                                                                                                                                                                                               ----------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----Pkinase     -2wzjF06 F:53-304                                                                                                                                                                                                                               ----------------------------------------------------------- Pfam domains (6)
         Sec.struct. author ....eeeeee.-----.eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee.....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee....................hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh........hhhhhhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhh..................hhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------PROTEIN_KINASE_ATP      ----------------------------------------------------------------------------------------PROTEIN_KINAS-------------------------------------------------------------------------------------------------------------------------------------------UBA  PDB: F:323-362 UniProt: 323-362    - PROSITE
           Transcript 1 (1) Exon 1.2  PDB: F:49-78 (gaps) Exon 1.3          Exon 1.4         ---------------------Exon 1.6  PDB: F:135-158Exon 1.7           Exon 1.8  PDB: F:178-256 UniProt: 178-256                                      Exon 1.9  PDB: F:257-296                Exon 1.10b  PDB: F:297-330        --------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.5  PDB: F:113-13--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11b  PDB: F:330-363         Transcript 1 (2)
                 2wzj F  49 HIGNYRLLKTI-----AKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGY 363
                                    58|     | 68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358     
                                     59    65                                                                                                                                                                                                                                                                                                          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WZJ)

(-) CATH Domains  (3, 18)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: PKinase (934)

(-) Gene Ontology  (31, 31)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MARK2_RAT | O08679)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0050321    tau-protein kinase activity    Catalysis of the reaction: ATP + tau-protein = ADP + O-phospho-tau-protein.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016055    Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0030010    establishment of cell polarity    The specification and formation of anisotropic intracellular organization or cell growth patterns.
    GO:0045197    establishment or maintenance of epithelial cell apical/basal polarity    Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0001764    neuron migration    The characteristic movement of an immature neuron from germinal zones to specific positions where they will reside as they mature.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0010976    positive regulation of neuron projection development    Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0050770    regulation of axonogenesis    Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron.
    GO:0051493    regulation of cytoskeleton organization    Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.
cellular component
    GO:0005884    actin filament    A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0016328    lateral plasma membrane    The portion of the plasma membrane at the lateral side of the cell. In epithelial cells, lateral plasma membranes are on the sides of cells which lie at the interface of adjacent cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0097427    microtubule bundle    An arrangement of closely apposed microtubules running parallel to each other.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MARK2_RAT | O086791y8g 1zmu 1zmv 1zmw 2r0i

(-) Related Entries Specified in the PDB File

1y8g CATALYTIC AND UBIQUTIN-ASSOCIATED DOMAINS OF MARK2/PAR-1:INACTIVE DOUBLE MUTANT WITH SELENOMETHIONINE
1zmu CATALYTIC AND UBIQUTIN-ASSOCIATED DOMAINS OF MARK2/PAR-1:WILD TYPE
1zmv CATALYTIC AND UBIQUTIN-ASSOCIATED DOMAINS OF MARK2/PAR-1:K82R MUTANT
1zmw CATALYTIC AND UBIQUTIN-ASSOCIATED DOMAINS OF MARK2/PAR-1:T208A/S212A INACTIVE DOUBLE MUTANT