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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
 
Authors :  T. Becker, E. Mandon, S. Bhushan, A. Jarasch, J. P. Armache, S. Funes, F. J. Gumbart, T. Mielke, O. Berninghausen, K. Schulten, E. Westhof, R. G R. Beckmann
Date :  22 Oct 09  (Deposition) - 08 Dec 09  (Release) - 19 Apr 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  6.48
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Keywords :  Ribosome, Protein Exit Tunnel, Cotranslational Protein Translocation, Protein Conducting Channel, Signal Sequence (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Becker, S. Bhushan, A. Jarasch, J. P. Armache, S. Funes, F. Jossinet J. Gumbart, T. Mielke, O. Berninghausen, K. Schulten, E. Westhof, R. Gilmore, E. Mandon, R. Beckmann
Structure Of Monomeric Yeast And Mammalian Sec61 Complexes Interacting With The Translating Ribosome.
Science V. 326 1369 2009
PubMed-ID: 19933108  |  Reference-DOI: 10.1126/SCIENCE.1178535

(-) Compounds

Molecule 1 - PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1
    ChainsA
    OrganPANCREAS
    Organism CommonDOG
    Organism ScientificCANIS LUPUS FAMILIARIS
    Organism Taxid9615
    SynonymSEC61ALPHA, SEC61 ALPHA-1
 
Molecule 2 - PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA
    ChainsB
    OrganPANCREAS
    Organism CommonDOG
    Organism ScientificCANIS LUPUS FAMILIARIS
    Organism Taxid9615
    SynonymSEC61GAMMA
 
Molecule 3 - PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA
    ChainsC
    OrganPANCREAS
    Organism CommonDOG
    Organism ScientificCANIS LUPUS FAMILIARIS
    Organism Taxid9615
    SynonymSEC61BETA
 
Molecule 4 - 5.8S RRNA
    ChainsD
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsH5_H6_H7 FRAGMENT
    Other Details - SourceCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
 
Molecule 5 - 25S RRNA
    ChainsE
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsH24 FRAGMENT
    Other Details - SourceCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
 
Molecule 6 - 25S RRNA
    ChainsF
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsH50 FRAGMENT
    Other Details - SourceCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
 
Molecule 7 - 25S RRNA
    ChainsG
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsH59 FRAGMENT
    Other Details - SourceCOORDINATE SOURCE ORIGINALLY FROM ORYZA SATIVA
 
Molecule 8 - 60S RIBOSOMAL PROTEIN L4-B
    ChainsH
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
    Synonym60S RIBOSOMAL PROTEIN L4, L2, YL2, RP2
 
Molecule 9 - 60S RIBOSOMAL PROTEIN L17-A
    ChainsI
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
    Synonym60S RIBOSOMAL PROTEIN L17, L20A, YL17
 
Molecule 10 - 60S RIBOSOMAL PROTEIN L19
    ChainsJ
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
    SynonymL23, YL14, RP15L, RP33
 
Molecule 11 - 60S RIBOSOMAL PROTEIN L25
    ChainsK
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
    SynonymYL25, RP16L, YP42'
 
Molecule 12 - 60S RIBOSOMAL PROTEIN L26-A
    ChainsL
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
    Synonym60S RIBOSOMAL PROTEIN L26, L33, YL33
 
Molecule 13 - 60S RIBOSOMAL PROTEIN L31-A
    ChainsM
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
    Synonym60S RIBOSOMAL PROTEIN L31, L34, YL28
 
Molecule 14 - 60S RIBOSOMAL PROTEIN L35
    ChainsN
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
 
Molecule 15 - 60S RIBOSOMAL PROTEIN L39
    ChainsO
    Organism CommonBREAD WHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565
    Other DetailsCOORDINATE SOURCE ORIGINALLY FROM SACCHAROMYCES CEREVISIAE
    SynonymL46, YL40

 Structural Features

(-) Chains, Units

  123456789101112131415
Asymmetric/Biological Unit ABCDEFGHIJKLMNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2WWB)

(-) Sites  (0, 0)

(no "Site" information available for 2WWB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WWB)

(-) Cis Peptide Bonds  (64, 64)

Asymmetric/Biological Unit
No.Residues
1Glu A:101 -Val A:102
2Val A:102 -Gly A:103
3Gly A:314 -Asn A:315
4Ala A:335 -Tyr A:336
5Asp A:357 -Pro A:358
6Glu A:406 -Thr A:407
7Gly C:69 -Pro C:70
8Thr H:12 -Gly H:13
9Gly H:13 -Glu H:14
10Glu H:54 -Lys H:55
11Gly H:57 -His H:58
12Gln H:59 -Thr H:60
13Ala H:70 -Val H:71
14Ile H:74 -Pro H:75
15Pro H:75 -Arg H:76
16Gly H:79 -Gly H:80
17Gly H:83 -Arg H:84
18Gly H:86 -Gln H:87
19Gly H:88 -Ala H:89
20Gly H:91 -Asn H:92
21Thr H:105 -Trp H:106
22Ile H:145 -Pro H:146
23Ile H:159 -Gln H:160
24Gly H:173 -Ala H:174
25Ser H:184 -Lys H:185
26Trp H:199 -Thr H:200
27Asn H:213 -Gly H:214
28Gly H:214 -Ile H:215
29Trp H:262 -Gly H:263
30Arg I:3 -Tyr I:4
31Tyr I:4 -Gly I:5
32Thr I:9 -Asn I:10
33Ile I:36 -Asn I:37
34Asn I:37 -Gly I:38
35Gly I:38 -Trp I:39
36Arg I:56 -Ala I:57
37Ser I:66 -Ile I:67
38Thr I:70 -Ala I:71
39Gly I:73 -Lys I:74
40Lys I:105 -Gly I:106
41Asp I:108 -Ala I:109
42Gln L:4 -Ser L:5
43Ser L:10 -Asp L:11
44Asp L:83 -Lys L:84
45Lys L:84 -Val L:85
46Val L:85 -Thr L:86
47Gly L:124 -Lys L:125
48Ser M:24 -Phe M:25
49Lys M:65 -Gly M:66
50Arg M:77 -Lys M:78
51Asn M:80 -Glu M:81
52Gly N:3 -Val N:4
53Lys N:5 -Ala N:6
54Ser N:13 -Lys N:14
55Val N:33 -Gln N:34
56Gln N:34 -Lys N:35
57Leu N:36 -Ser N:37
58Ser N:37 -Arg N:38
59Pro N:39 -Ser N:40
60Ser N:40 -Leu N:41
61Lys O:5 -Ser O:6
62Arg O:21 -Pro O:22
63Pro O:22 -Leu O:23
64Thr O:31 -Asn O:32

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WWB)

(-) PROSITE Motifs  (10, 10)

Asymmetric/Biological Unit (10, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SECE_SEC61GPS01067 Protein secE/sec61-gamma signature.SC61G_CANLF14-42  1B:14-42
2RIBOSOMAL_L39EPS00051 Ribosomal protein L39e signature.RL39_YEAST30-46  1O:30-37
3RIBOSOMAL_L29PS00579 Ribosomal protein L29 signature.RL35A_YEAST40-54  1N:40-54
4RIBOSOMAL_L31EPS01144 Ribosomal protein L31e signature.RL31A_YEAST49-63  1M:49-63
5RIBOSOMAL_L24PS01108 Ribosomal protein L24 signature.RL26A_YEAST53-70  1L:53-70
6SECY_1PS00755 Protein secY signature 1.S61A1_CANLF75-94  1A:75-94
7RIBOSOMAL_L1EPS00939 Ribosomal protein L1e signature.RL4B_YEAST114-140  1H:114-140
8RIBOSOMAL_L23PS00050 Ribosomal protein L23 signature.RL25_YEAST120-135  1K:120-135
9RIBOSOMAL_L22PS00464 Ribosomal protein L22 signature.RL17A_YEAST126-150  1I:126-150
10SECY_2PS00756 Protein secY signature 2.S61A1_CANLF164-182  1A:164-182

(-) Exons   (8, 8)

Asymmetric/Biological Unit (8, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YDL075W1YDL075W.1IV:322226-32228257RL31A_YEAST1-19191M:9-1911
1.2YDL075W2YDL075W.2IV:322704-322988285RL31A_YEAST20-113941M:20-9273

2.1YDL191W1YDL191W.1IV:117665-1176673RL35A_YEAST1-111N:1-11
2.2YDL191W2YDL191W.2IV:118159-118518360RL35A_YEAST2-1201191N:2-6968

3.1YDR012W1YDR012W.1IV:471851-4729391089RL4B_YEAST1-3623621H:1-269269

4.1YKL180W1YKL180W.1XI:109274-109582309RL17A_YEAST1-1031031I:1-103103
4.2YKL180W2YKL180W.2XI:109889-110134246RL17A_YEAST104-184811I:104-15350

5.1YOL127W1YOL127W.1XV:80348-8036013RL25_YEAST1-550--
5.2YOL127W2YOL127W.2XV:80775-81190416RL25_YEAST5-1421381K:57-13983

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:476
 aligned with S61A1_CANLF | P38377 from UniProtKB/Swiss-Prot  Length:476

    Alignment length:476
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470      
         S61A1_CANLF      1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF  476
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh...........hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..................hhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.................hhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------SECY_1  PDB: A:75-94---------------------------------------------------------------------SECY_2             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2wwb A    1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF  476
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470      

Chain B from PDB  Type:PROTEIN  Length:68
 aligned with SC61G_CANLF | P60058 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:68
                                    10        20        30        40        50        60        
         SC61G_CANLF      1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG   68
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------SECE_SEC61G  PDB: B:14-42    -------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                2wwb B    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG   68
                                    10        20        30        40        50        60        

Chain C from PDB  Type:PROTEIN  Length:36
 aligned with SC61B_CANLF | P60467 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:36
                                    70        80        90      
         SC61B_CANLF     61 EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS   96
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                2wwb C   61 EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS   96
                                    70        80        90      

Chain D from PDB  Type:RNA  Length:63
                                                                                                
                2wwb D   41 AGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUG  103
                                    50        60        70        80        90       100   

Chain E from PDB  Type:RNA  Length:34
                                                                   
                2wwb E  528 UGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUAC  561
                                   537       547       557    

Chain F from PDB  Type:RNA  Length:25
                                                          
                2wwb F 1654 CCACGUCAACAGCAGUUGGACGUGG 1678
                                  1663      1673     

Chain G from PDB  Type:RNA  Length:14
                                               
                2wwb G 1917 ACACGUCGCGCGGU 1930
                                  1926    

Chain H from PDB  Type:PROTEIN  Length:269
 aligned with RL4B_YEAST | P49626 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         
          RL4B_YEAST      1 MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAAFTKLDQVWGSETVAS  269
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhh...hhhhhhhhhhhhhhhhh..................................................................hhhhhhhhhhhhhhhhhh.hhhhhhh.............hhhhhh..hhhhhhhhhhhhh.hhhhhhhh.......hhhhh...........eeee................eeee....hhhhhh........ee...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------RIBOSOMAL_L1E              --------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 3 Exon 3.1  PDB: H:1-269 UniProt: 1-362 [INCOMPLETE]                                                                                                                                                                                                                            Transcript 3
                2wwb H    1 MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAAFTKLDQVWGSETVAS  269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         

Chain I from PDB  Type:PROTEIN  Length:153
 aligned with RL17A_YEAST | P05740 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
         RL17A_YEAST      1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEK  153
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eeeeeeeee..hhhhhhhhhhhh...hhhhhhhhhhhhhhh..............................hhhhhhhhhhhhhhhhhh...........eeeeeee....eeeeeeee..eeeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L22            --- PROSITE (3)
               Transcript 4 Exon 4.1  PDB: I:1-103 UniProt: 1-103                                                                  Exon 4.2  PDB: I:104-153 UniProt: 104-184          Transcript 4
                2wwb I    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEK  153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   

Chain J from PDB  Type:PROTEIN  Length:53
                                                                                      
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.......ee...hhhhhhh..hhhhhhhhhhhh.ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                2wwb J    1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKK   53
                                    10        20        30        40        50   

Chain K from PDB  Type:PROTEIN  Length:83
 aligned with RL25_YEAST | P04456 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:83
                                    66        76        86        96       106       116       126       136   
          RL25_YEAST     57 LDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI  139
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..hhhhhhhhhhhheeeeee....hhhhhhhhhhhhhh..eeeeeee......eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------RIBOSOMAL_L23   ---- PROSITE (2)
               Transcript 5 Exon 5.2  PDB: K:57-139 UniProt: 5-142 [INCOMPLETE]                                 Transcript 5
                2wwb K   57 LDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI  139
                                    66        76        86        96       106       116       126       136   

Chain L from PDB  Type:PROTEIN  Length:127
 aligned with RL26A_YEAST | P05743 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:127
                                    10        20        30        40        50        60        70        80        90       100       110       120       
         RL26A_YEAST      1 MAKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE  127
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhh..........eee..hhhhhhhh..eee.....eeee........eeeeeeee....eeee.................hhh.eeeee...hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------RIBOSOMAL_L24     --------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                2wwb L    1 MAKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE  127
                                    10        20        30        40        50        60        70        80        90       100       110       120       

Chain M from PDB  Type:PROTEIN  Length:84
 aligned with RL31A_YEAST | P0C2H8 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:84
                                    18        28        38        48        58        68        78        88    
         RL31A_YEAST      9 TREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSY   92
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.hhhhhh.....hhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.........eeeee.............ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------RIBOSOMAL_L31E ----------------------------- PROSITE
               Transcript 1 Exon 1.1   Exon 1.2  PDB: M:20-92 UniProt: 20-113 [INCOMPLETE]                       Transcript 1
                2wwb M    9 TREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSY   92
                                    18        28        38        48        58        68        78        88    

Chain N from PDB  Type:PROTEIN  Length:69
 aligned with RL35A_YEAST | P0CX84 from UniProtKB/Swiss-Prot  Length:120

    Alignment length:69
                                    10        20        30        40        50        60         
         RL35A_YEAST      1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQREAVRQL   69
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------RIBOSOMAL_L29  --------------- PROSITE (3)
               Transcript 2 2Exon 2.2  PDB: N:2-69 UniProt: 2-120 [INCOMPLETE]                    Transcript 2
                2wwb N    1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQREAVRQL   69
                                    10        20        30        40        50        60         

Chain O from PDB  Type:PROTEIN  Length:37
 aligned with RL39_YEAST | P04650 from UniProtKB/Swiss-Prot  Length:51

    Alignment length:37
                                    10        20        30       
          RL39_YEAST      1 MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRY   37
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh....hhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------RIBOSOMA PROSITE (2)
                 Transcript ------------------------------------- Transcript
                2wwb O    1 MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRY   37
                                    10        20        30       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WWB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WWB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WWB)

(-) Gene Ontology  (40, 112)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (S61A1_CANLF | P38377)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0045047    protein targeting to ER    The process of directing proteins towards the endoplasmic reticulum (ER) using signals contained within the protein. One common mechanism uses a 16- to 30-residue signal sequence, typically located at the N-terminus of the protein and containing positively charged amino acids followed by a continuous stretch of hydrophobic residues, which directs the ribosome to the ER membrane and initiates transport of the growing polypeptide across the ER membrane.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0030176    integral component of endoplasmic reticulum membrane    The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain B   (SC61G_CANLF | P60058)
molecular function
    GO:0015450    P-P-bond-hydrolysis-driven protein transmembrane transporter activity    Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.
    GO:0008565    protein transporter activity    Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:0006605    protein targeting    The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
    GO:0045047    protein targeting to ER    The process of directing proteins towards the endoplasmic reticulum (ER) using signals contained within the protein. One common mechanism uses a 16- to 30-residue signal sequence, typically located at the N-terminus of the protein and containing positively charged amino acids followed by a continuous stretch of hydrophobic residues, which directs the ribosome to the ER membrane and initiates transport of the growing polypeptide across the ER membrane.
    GO:0071806    protein transmembrane transport    The directed movement of a protein across a membrane by means of some agent such as a transporter or pore.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0030176    integral component of endoplasmic reticulum membrane    The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain C   (SC61B_CANLF | P60467)
molecular function
    GO:0015450    P-P-bond-hydrolysis-driven protein transmembrane transporter activity    Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.
    GO:0048408    epidermal growth factor binding    Interacting selectively and non-covalently with epidermal growth factor.
biological process
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:0000060    protein import into nucleus, translocation    A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
    GO:0071806    protein transmembrane transport    The directed movement of a protein across a membrane by means of some agent such as a transporter or pore.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0030970    retrograde protein transport, ER to cytosol    The directed movement of unfolded or misfolded proteins from the endoplasmic reticulum to the cytosol through the translocon.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0030433    ubiquitin-dependent ERAD pathway    The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
cellular component
    GO:0005784    Sec61 translocon complex    A translocon complex that contains a core heterotrimer of conserved alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Sec61p, Sbh1p, and Sss1p. The Sec61 translocon complex functions in cotranslational and posttranslational translocation events.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0031205    endoplasmic reticulum Sec complex    An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex.
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain H   (RL4B_YEAST | P49626)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0002181    cytoplasmic translation    The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022625    cytosolic large ribosomal subunit    The large subunit of a ribosome located in the cytosol.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain I   (RL17A_YEAST | P05740)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0000448    cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)    Endonucleolytic cleavage within ITS2 between the 5.8S rRNA and the LSU-rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript.
    GO:0002181    cytoplasmic translation    The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022625    cytosolic large ribosomal subunit    The large subunit of a ribosome located in the cytosol.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0015934    large ribosomal subunit    The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
    GO:0030687    preribosome, large subunit precursor    A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain K   (RL25_YEAST | P04456)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0002181    cytoplasmic translation    The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
    GO:0000027    ribosomal large subunit assembly    The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022625    cytosolic large ribosomal subunit    The large subunit of a ribosome located in the cytosol.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0030687    preribosome, large subunit precursor    A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain L   (RL26A_YEAST | P05743)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0002181    cytoplasmic translation    The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
    GO:0042273    ribosomal large subunit biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022625    cytosolic large ribosomal subunit    The large subunit of a ribosome located in the cytosol.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0015934    large ribosomal subunit    The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain M   (RL31A_YEAST | P0C2H8)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0002181    cytoplasmic translation    The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
    GO:0006450    regulation of translational fidelity    Any process that modulates the ability of the translational apparatus to interpret the genetic code.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022625    cytosolic large ribosomal subunit    The large subunit of a ribosome located in the cytosol.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain N   (RL35A_YEAST | P0CX84)
molecular function
    GO:0003729    mRNA binding    Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0002181    cytoplasmic translation    The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
    GO:0000463    maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)    Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022625    cytosolic large ribosomal subunit    The large subunit of a ribosome located in the cytosol.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0030687    preribosome, large subunit precursor    A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain O   (RL39_YEAST | P04650)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0002181    cytoplasmic translation    The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022625    cytosolic large ribosomal subunit    The large subunit of a ribosome located in the cytosol.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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  Cis Peptide Bonds
    Ala A:335 - Tyr A:336   [ RasMol ]  
    Ala H:70 - Val H:71   [ RasMol ]  
    Arg I:3 - Tyr I:4   [ RasMol ]  
    Arg I:56 - Ala I:57   [ RasMol ]  
    Arg M:77 - Lys M:78   [ RasMol ]  
    Arg O:21 - Pro O:22   [ RasMol ]  
    Asn H:213 - Gly H:214   [ RasMol ]  
    Asn I:37 - Gly I:38   [ RasMol ]  
    Asn M:80 - Glu M:81   [ RasMol ]  
    Asp A:357 - Pro A:358   [ RasMol ]  
    Asp I:108 - Ala I:109   [ RasMol ]  
    Asp L:83 - Lys L:84   [ RasMol ]  
    Gln H:59 - Thr H:60   [ RasMol ]  
    Gln L:4 - Ser L:5   [ RasMol ]  
    Gln N:34 - Lys N:35   [ RasMol ]  
    Glu A:101 - Val A:102   [ RasMol ]  
    Glu A:406 - Thr A:407   [ RasMol ]  
    Glu H:54 - Lys H:55   [ RasMol ]  
    Gly A:314 - Asn A:315   [ RasMol ]  
    Gly C:69 - Pro C:70   [ RasMol ]  
    Gly H:13 - Glu H:14   [ RasMol ]  
    Gly H:173 - Ala H:174   [ RasMol ]  
    Gly H:214 - Ile H:215   [ RasMol ]  
    Gly H:57 - His H:58   [ RasMol ]  
    Gly H:79 - Gly H:80   [ RasMol ]  
    Gly H:83 - Arg H:84   [ RasMol ]  
    Gly H:86 - Gln H:87   [ RasMol ]  
    Gly H:88 - Ala H:89   [ RasMol ]  
    Gly H:91 - Asn H:92   [ RasMol ]  
    Gly I:38 - Trp I:39   [ RasMol ]  
    Gly I:73 - Lys I:74   [ RasMol ]  
    Gly L:124 - Lys L:125   [ RasMol ]  
    Gly N:3 - Val N:4   [ RasMol ]  
    Ile H:145 - Pro H:146   [ RasMol ]  
    Ile H:159 - Gln H:160   [ RasMol ]  
    Ile H:74 - Pro H:75   [ RasMol ]  
    Ile I:36 - Asn I:37   [ RasMol ]  
    Leu N:36 - Ser N:37   [ RasMol ]  
    Lys I:105 - Gly I:106   [ RasMol ]  
    Lys L:84 - Val L:85   [ RasMol ]  
    Lys M:65 - Gly M:66   [ RasMol ]  
    Lys N:5 - Ala N:6   [ RasMol ]  
    Lys O:5 - Ser O:6   [ RasMol ]  
    Pro H:75 - Arg H:76   [ RasMol ]  
    Pro N:39 - Ser N:40   [ RasMol ]  
    Pro O:22 - Leu O:23   [ RasMol ]  
    Ser H:184 - Lys H:185   [ RasMol ]  
    Ser I:66 - Ile I:67   [ RasMol ]  
    Ser L:10 - Asp L:11   [ RasMol ]  
    Ser M:24 - Phe M:25   [ RasMol ]  
    Ser N:13 - Lys N:14   [ RasMol ]  
    Ser N:37 - Arg N:38   [ RasMol ]  
    Ser N:40 - Leu N:41   [ RasMol ]  
    Thr H:105 - Trp H:106   [ RasMol ]  
    Thr H:12 - Gly H:13   [ RasMol ]  
    Thr I:70 - Ala I:71   [ RasMol ]  
    Thr I:9 - Asn I:10   [ RasMol ]  
    Thr O:31 - Asn O:32   [ RasMol ]  
    Trp H:199 - Thr H:200   [ RasMol ]  
    Trp H:262 - Gly H:263   [ RasMol ]  
    Tyr I:4 - Gly I:5   [ RasMol ]  
    Val A:102 - Gly A:103   [ RasMol ]  
    Val L:85 - Thr L:86   [ RasMol ]  
    Val N:33 - Gln N:34   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL17A_YEAST | P057401k5y 2ww9 2wwa 3j6x 3j6y 3j77 3j78 3jct 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v4b 4v6i 4v7f 4v7r 4v88 4v8t 4v8y 4v8z 4v91 5apn 5apo 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5fl8 5gak 5h4p 5i4l 5jcs 5juo 5jup 5jus 5jut 5juu 5lyb 5m1j 5mc6 5t62 5t6r 5tga 5tgm
        RL25_YEAST | P044561k5y 2ww9 2wwa 3j6x 3j6y 3j77 3j78 3jct 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v4b 4v6i 4v7f 4v7r 4v88 4v8t 4v8y 4v8z 4v91 5apn 5apo 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5fl8 5gak 5h4p 5i4l 5jcs 5juo 5jup 5jus 5jut 5juu 5lyb 5m1j 5mc6 5t62 5t6r 5tga 5tgm
        RL26A_YEAST | P057431k5y 2ww9 2wwa 3j6x 3j6y 3j77 3j78 3jct 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v4b 4v6i 4v7f 4v7r 4v88 4v8t 4v8y 4v8z 4v91 5apn 5apo 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5fl8 5gak 5h4p 5i4l 5jcs 5juo 5jup 5jus 5jut 5juu 5lyb 5m1j 5mc6 5t62 5t6r 5tga 5tgm
        RL31A_YEAST | P0C2H81k5y 2ww9 2wwa 3j6x 3j6y 3j77 3j78 3jct 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v4b 4v6i 4v7f 4v7r 4v88 4v8t 4v8y 4v8z 4v91 5apn 5apo 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5fl8 5gak 5h4p 5i4l 5jcs 5juo 5jup 5jus 5jut 5juu 5lyb 5m1j 5mc6 5t62 5t6r 5tga 5tgm
        RL35A_YEAST | P0CX841k5y 2ww9 2wwa 3j6x 3j6y 3j77 3j78 3jct 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v4b 4v6i 4v7f 4v7r 4v88 4v8t 4v91 5apn 5apo 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5fl8 5gak 5h4p 5i4l 5jcs 5juo 5jup 5jus 5jut 5juu 5lyb 5m1j 5mc6 5t62 5t6r 5tga 5tgm
        RL39_YEAST | P046502ww9 2wwa 3j6x 3j6y 3j77 3j78 3jct 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v6i 4v7f 4v7r 4v88 4v8t 4v8y 4v8z 4v91 5apn 5apo 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5fl8 5gak 5h4p 5i4l 5it7 5jcs 5juo 5jup 5jus 5jut 5juu 5lyb 5m1j 5mc6 5t62 5t6r 5tga 5tgm
        RL4B_YEAST | P496262ww9 2wwa 4v4b
        S61A1_CANLF | P383773jc2 4cg5 4cg6 4cg7 5a6u
        SC61B_CANLF | P604674cg5 4cg6 4cg7 5a6u
        SC61G_CANLF | P600583jc2 4cg5 4cg6 4cg7 5a6u

(-) Related Entries Specified in the PDB File

1k5y STRUCTURE OF THE TRANSLATING 80S RIBOSOME FROM YEAST, OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEINCOMPONENTS INTO A 15A CRYO- EM MAP. THIS FILE 1K5Y CONTAINSTHE 60S RIBOSOMAL SUBUNIT. THE FILE 1K5X CONTAINS THE 40SRIBOSOMAL SUBUNIT, THE P-SITE BOUND TRNA AND THE MRNACODON.
1s1i STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROMYEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA ANDPROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE,1S1I, CONTAINS 60S SUBUNIT. THE 40S RIBOSOMAL SUBUNIT ISIN FILE 1S1H.
2wwa CRYO-EM STRUCTURES OF IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME
2wwb CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME RELATED ID: EMD-1651 RELATED DB: EMDB CRYO-EM STRUCTURE OF THE PROGRAMMED YEAST 80 RIBOSOME BOUND THE SSH1 COMPLEX RELATED ID: EMD-1652 RELATED DB: EMDB CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME RELATED ID: EMD-1667 RELATED DB: EMDB CRYO-EM STRUCTURE OF THE ACTIVE YEAST SSH1 COMPLEX BOUND TO THE PROGRAMMED YEAST 80S RIBOSOME BEARING A P-SITE TRNA RELATED ID: EMD-1668 RELATED DB: EMDB CRYO-EM STRUCTURE OF THE ACTIVE YEAST 80S RIBOSOME BEARING A P-SITE TRNA AND WITH THE RRNA EXPANSION SEGMENT ES27 IN THE EXIT CONFORMATION RELATED ID: EMD-1669 RELATED DB: EMDB CRYO-EM STRUCTURES OF THE IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME