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(-) Description

Title :  STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT2199 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482
 
Authors :  M. D. L. Suits, Y. Zhu, A. Thompson, H. J. Gilbert, G. J. Davies
Date :  21 Oct 09  (Deposition) - 29 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Hydrolase, Glycoside Hydrolase Family 92, Bt2199 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zhu, M. D. L. Suits, A. Thompson, S. Chavan, Z. Dinev, C. Dumon, N. Smith, K. W. Moremen, Y. Xiang, A. Siriwardena, S. J. Williams, H. J. Gilbert, G. J. Davies
Mechanistic Insights Into A Ca2+-Dependent Family Of A-Mannosidases In A Human Gut Symbiont.
Nat. Chem. Biol. V. 6 125 2010
PubMed-ID: 20081828  |  Reference-DOI: 10.1038/NCHEMBIO.278

(-) Compounds

Molecule 1 - ALPHA-1,2-MANNOSIDASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 22
    Expression System Strain: TUNER
    Expression System Taxid: 562
    Fragment: RESIDUES 22-758
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482
    Synonym: MANNOSIDASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric/Biological Unit (4, 20)
No.NameCountTypeFull Name
1GOL14Ligand/IonGLYCEROL
2MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3NA4Ligand/IonSODIUM ION
4SWA1Ligand/Ion1S-8AB-OCTAHYDRO-INDOLIZIDINE-1A,2A,8B-TRIOL

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:33 , TYR A:77 , GLY A:639 , SER A:640 , HOH A:2019 , HOH A:2151 , HOH A:2152 , HOH A:2782 , HOH A:2784 , HOH A:2785BINDING SITE FOR RESIDUE MPD A 759
02AC2SOFTWAREHIS A:123 , GLU A:126 , HOH A:2146 , HOH A:2151 , HOH A:2152 , HOH A:2782BINDING SITE FOR RESIDUE NA A 799
03AC3SOFTWARESER A:40 , TYR A:643 , GLY A:645 , ASP A:648 , HOH A:2677 , HOH A:2680BINDING SITE FOR RESIDUE NA A 800
04AC4SOFTWAREGLY A:299 , GLY A:300 , GLN A:304 , ARG A:629 , LEU A:679 , ASN A:700 , HOH A:2786 , HOH A:2787BINDING SITE FOR RESIDUE GOL A 801
05AC5SOFTWAREPRO A:34 , ASN A:48 , TYR A:50 , TYR A:313 , ARG A:314 , LEU A:317 , HOH A:2043 , HOH A:2421BINDING SITE FOR RESIDUE GOL A 802
06AC6SOFTWARESER A:71 , GLY A:72 , TRP A:73 , PRO A:93 , TRP A:94 , ASN A:96 , HOH A:2105 , HOH A:2788 , GLU B:562BINDING SITE FOR RESIDUE GOL A 803
07AC7SOFTWAREHIS A:46 , PRO A:91 , ASP A:354 , GOL A:805 , HOH A:2037BINDING SITE FOR RESIDUE GOL A 804
08AC8SOFTWAREPRO A:91 , PHE A:318 , ASP A:349 , ASN A:350 , GLY A:351 , THR A:355 , TRP A:391 , GOL A:804BINDING SITE FOR RESIDUE GOL A 805
09AC9SOFTWAREARG A:184 , SER A:210 , ARG A:253 , HOH A:2335 , HOH A:2789BINDING SITE FOR RESIDUE GOL A 806
10BC1SOFTWAREHIS A:396 , ARG A:397 , GLY A:398 , ILE A:440 , HOH A:2257 , HOH A:2259 , HOH A:2790BINDING SITE FOR RESIDUE GOL A 807
11BC2SOFTWAREHIS B:123 , GLU B:126 , HOH B:2104 , HOH B:2106 , HOH B:2112 , HOH B:2114BINDING SITE FOR RESIDUE NA B 800
12BC3SOFTWAREGLY B:299 , GLY B:300 , GLN B:304 , ARG B:629 , LEU B:679 , LYS B:681 , HOH B:2647 , HOH B:2649BINDING SITE FOR RESIDUE GOL B 801
13BC4SOFTWAREARG B:184 , PHE B:209 , SER B:210 , ARG B:253BINDING SITE FOR RESIDUE GOL B 802
14BC5SOFTWAREHIS B:603 , CYS B:644 , HOH B:2650BINDING SITE FOR RESIDUE GOL B 803
15BC6SOFTWAREVAL B:55 , PRO B:56 , SER B:149 , GLN B:287 , GLU B:321 , HOH B:2316 , HOH B:2651BINDING SITE FOR RESIDUE GOL B 804
16BC7SOFTWARESER B:92 , TRP B:353 , ASP B:354 , TRP B:391 , CYS B:399 , MET B:400 , GLU B:537 , ASP B:648 , HOH B:2549 , HOH B:2550BINDING SITE FOR RESIDUE SWA B 900
17BC8SOFTWAREHIS C:123 , GLU C:126 , HOH C:2115 , HOH C:2119 , HOH C:2124 , HOH C:2125BINDING SITE FOR RESIDUE NA C 800
18BC9SOFTWAREGLY C:299 , GLY C:300 , GLN C:304 , ARG C:629 , LEU C:679 , LYS C:681 , HOH C:2618 , HOH C:2619BINDING SITE FOR RESIDUE GOL C 801
19CC1SOFTWARESER C:92 , TRP C:94 , HOH C:2620 , HOH C:2621 , HOH C:2622BINDING SITE FOR RESIDUE GOL C 802
20CC2SOFTWAREASN C:649 , GLY C:650 , GLN C:651 , HOH C:2624 , HOH C:2625 , HOH C:2626 , HOH C:2627BINDING SITE FOR RESIDUE GOL C 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WW2)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Phe A:318 -Pro A:319
2Ser A:393 -Pro A:394
3Tyr A:459 -Pro A:460
4Phe B:318 -Pro B:319
5Ser B:393 -Pro B:394
6Tyr B:459 -Pro B:460
7Phe B:585 -Val B:586
8Phe C:318 -Pro C:319
9Ser C:393 -Pro C:394
10Tyr C:459 -Pro C:460
11Thr C:582 -Tyr C:583
12Gly C:584 -Phe C:585

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WW2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WW2)

(-) Exons   (0, 0)

(no "Exon" information available for 2WW2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:737
 aligned with Q8A5N9_BACTN | Q8A5N9 from UniProtKB/TrEMBL  Length:758

    Alignment length:737
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       
         Q8A5N9_BACTN    22 SKKTVEFVDYVNPLMGTESTFAFSHGNTYPAVAVPWGMNFWSPQTGENGSGWMYTYTDSLMRGFRQTHQPSPWINDYGTFSIMPLAGELKMSHKERLVPFSHQQEKATPYNYSVTFNNGLQTSLSATSRGAVFEVSFPEKEDQYVVVDAYNGGSSITIEPEKRLVKGATRYNNGGVPDNFANYFMMEFSHPVIEYGTYNGDTLLHHQTDVAADYTCAYLKFDVPAGEKLTIRTASSFISPEQAAINFNREVADADVQLISGKAREQWNNYLGRVEAEGGTDEQLRTFYSCLYRTLLFPREFYEFDSQGNPVYYSPYDGNVHDGYMYTDNGFWDTFRAVHPLFTLLYPEVSERVTQSIINAYNESGFMPEWASPGHRGCMIGNNSVSLLVDAWMKGIQTVDAEKALEAMIHQTQARHAEIASVGRDGFEYYDKLGYVPYPEVPEATAKTLEYAYADWCIARFAESLGKQDIADQYYQKAPNYRNLYYPEHGFMWTKDAKGNWRDRFDATEWGGPFTEGSSWHWTWSVFHDPEGLSELMGGHEPMIARLDSMFVAPNTYNYGTYGFVIHEIAEMVALNMGQYAHGNQPVQHAIYLYDYIGQPWKTQYHLRNVMDKLYNSGSKGYCGDEDNGQTSAWYVFSAMGFYPVCPGMPEYAIGSPLFKKVTLHLPEGKNFVVSAADNAADRPYIRKALLNGQEFTRNYLTHDELKQGGELNLSMDSVPNQQRGTQPADFPYSYSK 758
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ww2A01 A:22-59,A:60-294,A:319-349    2ww2A01 A:22-59,A:60-294,A:319-349  [code=2.70.98.10, no name defined]                                                                                                                                                                     2ww2A02                 2ww2A01                        2ww2A03 A:350-444 alpha-1,2-mannosidase                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------2ww2A02                  2ww2A02 A:295-318,A:611-635,A:636-752 GH92 mannosidase domain                                                        ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh............................eeeee...............ee.eeeee............eeeeeee...........eeeeeeeeeee..eeeeee....eeeeee...eeeeeee......eeeeee.....eeeeeehhh.eeeeee............eeeeeee.....eeeee....eee...eeee...eeeeee.......eeeeeeee..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhh...ee..ee.....eeee......eee...ee.eehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee..........hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...........hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.................................hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh................hhhhhhhhhhhee.......eeee......eeeee.hhh.eeeee.........eeeeeee..ee....eeehhhhhh.eeeeeeee.........hhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ww2 A  22 SKKTVEFVDYVNPLMGTESTFAFSHGNTYPAVAVPWGMNFWSPQTGENGSGWMYTYTDSLMRGFRQTHQPSPWINDYGTFSIMPLAGELKMSHKERLVPFSHQQEKATPYNYSVTFNNGLQTSLSATSRGAVFEVSFPEKEDQYVVVDAYNGGSSITIEPEKRLVKGATRYNNGGVPDNFANYFMMEFSHPVIEYGTYNGDTLLHHQTDVAADYTCAYLKFDVPAGEKLTIRTASSFISPEQAAINFNREVADADVQLISGKAREQWNNYLGRVEAEGGTDEQLRTFYSCLYRTLLFPREFYEFDSQGNPVYYSPYDGNVHDGYMYTDNGFWDTFRAVHPLFTLLYPEVSERVTQSIINAYNESGFMPEWASPGHRGCMIGNNSVSLLVDAWMKGIQTVDAEKALEAMIHQTQARHAEIASVGRDGFEYYDKLGYVPYPEVPEATAKTLEYAYADWCIARFAESLGKQDIADQYYQKAPNYRNLYYPEHGFMWTKDAKGNWRDRFDATEWGGPFTEGSSWHWTWSVFHDPEGLSELMGGHEPMIARLDSMFVAPNTYNYGTYGFVIHEIAEMVALNMGQYAHGNQPVQHAIYLYDYIGQPWKTQYHLRNVMDKLYNSGSKGYCGDEDNGQTSAWYVFSAMGFYPVCPGMPEYAIGSPLFKKVTLHLPEGKNFVVSAADNAADRPYIRKALLNGQEFTRNYLTHDELKQGGELNLSMDSVPNQQRGTQPADFPYSYSK 758
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       


Chain B from PDB  Type:PROTEIN  Length:737
 aligned with Q8A5N9_BACTN | Q8A5N9 from UniProtKB/TrEMBL  Length:758

    Alignment length:737
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       
         Q8A5N9_BACTN    22 SKKTVEFVDYVNPLMGTESTFAFSHGNTYPAVAVPWGMNFWSPQTGENGSGWMYTYTDSLMRGFRQTHQPSPWINDYGTFSIMPLAGELKMSHKERLVPFSHQQEKATPYNYSVTFNNGLQTSLSATSRGAVFEVSFPEKEDQYVVVDAYNGGSSITIEPEKRLVKGATRYNNGGVPDNFANYFMMEFSHPVIEYGTYNGDTLLHHQTDVAADYTCAYLKFDVPAGEKLTIRTASSFISPEQAAINFNREVADADVQLISGKAREQWNNYLGRVEAEGGTDEQLRTFYSCLYRTLLFPREFYEFDSQGNPVYYSPYDGNVHDGYMYTDNGFWDTFRAVHPLFTLLYPEVSERVTQSIINAYNESGFMPEWASPGHRGCMIGNNSVSLLVDAWMKGIQTVDAEKALEAMIHQTQARHAEIASVGRDGFEYYDKLGYVPYPEVPEATAKTLEYAYADWCIARFAESLGKQDIADQYYQKAPNYRNLYYPEHGFMWTKDAKGNWRDRFDATEWGGPFTEGSSWHWTWSVFHDPEGLSELMGGHEPMIARLDSMFVAPNTYNYGTYGFVIHEIAEMVALNMGQYAHGNQPVQHAIYLYDYIGQPWKTQYHLRNVMDKLYNSGSKGYCGDEDNGQTSAWYVFSAMGFYPVCPGMPEYAIGSPLFKKVTLHLPEGKNFVVSAADNAADRPYIRKALLNGQEFTRNYLTHDELKQGGELNLSMDSVPNQQRGTQPADFPYSYSK 758
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ww2B01 B:22-59,B:60-294,B:319-349    2ww2B01 B:22-59,B:60-294,B:319-349  [code=2.70.98.10, no name defined]                                                                                                                                                                     2ww2B02                 2ww2B01                        2ww2B03 B:350-444 alpha-1,2-mannosidase                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------2ww2B02                  2ww2B02 B:295-318,B:611-635,B:636-752 GH92 mannosidase domain                                                        ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh............................eeeee...............ee.eeeee............eeeeeee...........eeeeeeeeee....eeeee....eeeeee...eeeeeee......eeeeee.....eeeeeehhh.eeeeee............eeeeeee.....eeeee....eee...eeee...eeeeee.......eeeeeeee..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhh...ee..ee.....eeee......eee...ee.eehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhh.....hhhhhhhhhhhhhhh...........hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.................................hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhee.......eeee......eeeee.hhh.eeeee.........eeeeeee..ee....eeehhhhhh.eeeeeeee.........hhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ww2 B  22 SKKTVEFVDYVNPLMGTESTFAFSHGNTYPAVAVPWGMNFWSPQTGENGSGWMYTYTDSLMRGFRQTHQPSPWINDYGTFSIMPLAGELKMSHKERLVPFSHQQEKATPYNYSVTFNNGLQTSLSATSRGAVFEVSFPEKEDQYVVVDAYNGGSSITIEPEKRLVKGATRYNNGGVPDNFANYFMMEFSHPVIEYGTYNGDTLLHHQTDVAADYTCAYLKFDVPAGEKLTIRTASSFISPEQAAINFNREVADADVQLISGKAREQWNNYLGRVEAEGGTDEQLRTFYSCLYRTLLFPREFYEFDSQGNPVYYSPYDGNVHDGYMYTDNGFWDTFRAVHPLFTLLYPEVSERVTQSIINAYNESGFMPEWASPGHRGCMIGNNSVSLLVDAWMKGIQTVDAEKALEAMIHQTQARHAEIASVGRDGFEYYDKLGYVPYPEVPEATAKTLEYAYADWCIARFAESLGKQDIADQYYQKAPNYRNLYYPEHGFMWTKDAKGNWRDRFDATEWGGPFTEGSSWHWTWSVFHDPEGLSELMGGHEPMIARLDSMFVAPNTYNYGTYGFVIHEIAEMVALNMGQYAHGNQPVQHAIYLYDYIGQPWKTQYHLRNVMDKLYNSGSKGYCGDEDNGQTSAWYVFSAMGFYPVCPGMPEYAIGSPLFKKVTLHLPEGKNFVVSAADNAADRPYIRKALLNGQEFTRNYLTHDELKQGGELNLSMDSVPNQQRGTQPADFPYSYSK 758
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       


Chain C from PDB  Type:PROTEIN  Length:737
 aligned with Q8A5N9_BACTN | Q8A5N9 from UniProtKB/TrEMBL  Length:758

    Alignment length:737
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       
         Q8A5N9_BACTN    22 SKKTVEFVDYVNPLMGTESTFAFSHGNTYPAVAVPWGMNFWSPQTGENGSGWMYTYTDSLMRGFRQTHQPSPWINDYGTFSIMPLAGELKMSHKERLVPFSHQQEKATPYNYSVTFNNGLQTSLSATSRGAVFEVSFPEKEDQYVVVDAYNGGSSITIEPEKRLVKGATRYNNGGVPDNFANYFMMEFSHPVIEYGTYNGDTLLHHQTDVAADYTCAYLKFDVPAGEKLTIRTASSFISPEQAAINFNREVADADVQLISGKAREQWNNYLGRVEAEGGTDEQLRTFYSCLYRTLLFPREFYEFDSQGNPVYYSPYDGNVHDGYMYTDNGFWDTFRAVHPLFTLLYPEVSERVTQSIINAYNESGFMPEWASPGHRGCMIGNNSVSLLVDAWMKGIQTVDAEKALEAMIHQTQARHAEIASVGRDGFEYYDKLGYVPYPEVPEATAKTLEYAYADWCIARFAESLGKQDIADQYYQKAPNYRNLYYPEHGFMWTKDAKGNWRDRFDATEWGGPFTEGSSWHWTWSVFHDPEGLSELMGGHEPMIARLDSMFVAPNTYNYGTYGFVIHEIAEMVALNMGQYAHGNQPVQHAIYLYDYIGQPWKTQYHLRNVMDKLYNSGSKGYCGDEDNGQTSAWYVFSAMGFYPVCPGMPEYAIGSPLFKKVTLHLPEGKNFVVSAADNAADRPYIRKALLNGQEFTRNYLTHDELKQGGELNLSMDSVPNQQRGTQPADFPYSYSK 758
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ww2C01 C:22-59,C:60-294,C:319-349    2ww2C01 C:22-59,C:60-294,C:319-349  [code=2.70.98.10, no name defined]                                                                                                                                                                     2ww2C02                 2ww2C01                        2ww2C03 C:350-444 alpha-1,2-mannosidase                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------2ww2C02                  2ww2C02 C:295-318,C:611-635,C:636-752 GH92 mannosidase domain                                                        ------ CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Glyco_hydro_92-2ww2C01 C:233-741                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ----------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Glyco_hydro_92-2ww2C02 C:233-741                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ----------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Glyco_hydro_92-2ww2C03 C:233-741                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ----------------- Pfam domains (3)
         Sec.struct. author .....hhhhhh............................eeeee...............ee.eeeee............eeeeeee...........eeeeeeeeee....eeeee....eeeeee...eeeeeee......eeeeee.....eeeeeehhh.eeeeee............eeeeeee.....eeeee....eee...eeee...eeeeee.......eeeeeeee..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhh...ee..ee.....eeee......eee...ee.eehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhh.....hhhhhhhhhhhhhhh...........hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.................................hhhhhh.....hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh................hhhhhhhhhhhee.......eeee......eeeee.hhh.eeeee.........eeeeeee..ee....eeehhhhhh.eeeeeeee.........hhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ww2 C  22 SKKTVEFVDYVNPLMGTESTFAFSHGNTYPAVAVPWGMNFWSPQTGENGSGWMYTYTDSLMRGFRQTHQPSPWINDYGTFSIMPLAGELKMSHKERLVPFSHQQEKATPYNYSVTFNNGLQTSLSATSRGAVFEVSFPEKEDQYVVVDAYNGGSSITIEPEKRLVKGATRYNNGGVPDNFANYFMMEFSHPVIEYGTYNGDTLLHHQTDVAADYTCAYLKFDVPAGEKLTIRTASSFISPEQAAINFNREVADADVQLISGKAREQWNNYLGRVEAEGGTDEQLRTFYSCLYRTLLFPREFYEFDSQGNPVYYSPYDGNVHDGYMYTDNGFWDTFRAVHPLFTLLYPEVSERVTQSIINAYNESGFMPEWASPGHRGCMIGNNSVSLLVDAWMKGIQTVDAEKALEAMIHQTQARHAEIASVGRDGFEYYDKLGYVPYPEVPEATAKTLEYAYADWCIARFAESLGKQDIADQYYQKAPNYRNLYYPEHGFMWTKDAKGNWRDRFDATEWGGPFTEGSSWHWTWSVFHDPEGLSELMGGHEPMIARLDSMFVAPNTYNYGTYGFVIHEIAEMVALNMGQYAHGNQPVQHAIYLYDYIGQPWKTQYHLRNVMDKLYNSGSKGYCGDEDNGQTSAWYVFSAMGFYPVCPGMPEYAIGSPLFKKVTLHLPEGKNFVVSAADNAADRPYIRKALLNGQEFTRNYLTHDELKQGGELNLSMDSVPNQQRGTQPADFPYSYSK 758
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WW2)

(-) CATH Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: Pec_lyase (42)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (Q8A5N9_BACTN | Q8A5N9)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8A5N9_BACTN | Q8A5N9: 2wvy

(-) Related Entries Specified in the PDB File

2wvy STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT2199 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482