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(-) Description

Title :  STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482
 
Authors :  M. D. L. Suits, Y. Zhu, A. Thompson, H. J. Gilbert, G. J. Davies
Date :  21 Oct 09  (Deposition) - 03 Nov 09  (Release) - 26 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Glycoside Hydrolase Family 92, Gh92, Hydrolase, Bt3990 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zhu, M. D. L. Suits, A. Thompson, S. Chavan, Z. Dinev, C. Dumon, N. Smith, K. W. Moremen, Y. Xiang, A. Siriwardena, S. J. Williams, H. J. Gilbert, G. J. Davies
Mechanistic Insights Into A Ca2+-Dependent Family Of A-Mannosidases In A Human Gut Symbiont.
Nat. Chem. Biol. V. 6 125 2010
PubMed-ID: 20081828  |  Reference-DOI: 10.1038/NCHEMBIO.278

(-) Compounds

Molecule 1 - PUTATIVE ALPHA-1,2-MANNOSIDASE
    Chains: A, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 22
    Expression System Strain: TUNER
    Expression System Taxid: 562
    Fragment: RESIDUES 20-755
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482
    Synonym: MANNOSIDASE
 
Molecule 2 - PUTATIVE ALPHA-1,2-MANNOSIDASE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 22
    Expression System Strain: TUNER
    Expression System Taxid: 562
    Fragment: RESIDUES 20-755
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482
    Synonym: MANNOSIDASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 128)

Asymmetric Unit (3, 128)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2GOL16Ligand/IonGLYCEROL
3MSE108Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 31)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL4Ligand/IonGLYCEROL
3MSE27Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 31)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL4Ligand/IonGLYCEROL
3MSE27Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 31)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL4Ligand/IonGLYCEROL
3MSE27Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 31)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL4Ligand/IonGLYCEROL
3MSE27Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:533 , GLY A:600 , GLN A:602 , ASP A:644 , HOH A:2369 , HOH A:2421 , HOH A:2448 , HOH A:2453BINDING SITE FOR RESIDUE CA A 801
02AC2SOFTWARESER A:86 , ASP A:348 , TRP A:385 , CYS A:393 , MSE A:394 , HOH A:2452 , HOH A:2454BINDING SITE FOR RESIDUE GOL A 802
03AC3SOFTWAREGLN A:284 , LYS A:288 , VAL A:364 , GLU A:684 , HOH A:2262 , HOH A:2528BINDING SITE FOR RESIDUE GOL A 803
04AC4SOFTWAREGLY A:293 , GLY A:294 , GLN A:298 , LEU A:675 , ASN A:696 , SER A:697 , HOH A:2437 , HOH A:2529BINDING SITE FOR RESIDUE GOL A 804
05AC5SOFTWARETYR A:126 , GLU A:272 , ALA A:275 , HOH A:2083BINDING SITE FOR RESIDUE GOL A 805
06AC6SOFTWAREGLU B:533 , GLY B:600 , GLN B:602 , ASP B:644 , HOH B:2311 , HOH B:2312BINDING SITE FOR RESIDUE CA B 801
07AC7SOFTWAREGLN B:284 , LYS B:288 , TYR B:361 , VAL B:364 , GLU B:684 , HOH B:2221 , HOH B:2463BINDING SITE FOR RESIDUE GOL B 802
08AC8SOFTWAREGLY B:293 , GLY B:294 , GLN B:298 , LEU B:675 , ASN B:696 , SER B:697 , HOH B:2366BINDING SITE FOR RESIDUE GOL B 803
09AC9SOFTWARESER B:86 , ILE B:89 , ASP B:348 , TRP B:385 , CYS B:393 , MSE B:394 , HOH B:2381BINDING SITE FOR RESIDUE GOL B 804
10BC1SOFTWARETHR B:35 , PHE B:36 , ASP B:65 , TRP B:67BINDING SITE FOR RESIDUE GOL B 805
11BC2SOFTWAREGLU C:533 , GLY C:600 , GLN C:602 , ASP C:644 , HOH C:2386 , HOH C:2431BINDING SITE FOR RESIDUE CA C 801
12BC3SOFTWAREGLY C:293 , GLY C:294 , GLN C:298 , LEU C:675 , LYS C:677 , ASN C:696 , HOH C:2526 , HOH C:2527BINDING SITE FOR RESIDUE GOL C 802
13BC4SOFTWAREGLN C:284 , LYS C:288 , TYR C:361 , VAL C:364 , GLU C:684 , HOH C:2267 , HOH C:2528 , HOH C:2529BINDING SITE FOR RESIDUE GOL C 803
14BC5SOFTWAREPRO C:337 , GLY C:338 , ASN C:374 , HOH C:2259 , HOH C:2272BINDING SITE FOR RESIDUE GOL C 804
15BC6SOFTWARESER C:86 , ASP C:348 , TRP C:385 , CYS C:393 , MSE C:394 , ASP C:644 , HOH C:2531BINDING SITE FOR RESIDUE GOL C 805
16BC7SOFTWAREGLU D:533 , GLY D:600 , GLN D:602 , ASP D:644 , HOH D:2401BINDING SITE FOR RESIDUE CA D 801
17BC8SOFTWARESER D:86 , ASP D:348 , TRP D:385 , MSE D:394 , ASP D:644 , HOH D:2430 , HOH D:2497BINDING SITE FOR RESIDUE GOL D 803
18BC9SOFTWARELYS D:288 , VAL D:364 , GLU D:684 , HOH D:2265 , HOH D:2498BINDING SITE FOR RESIDUE GOL D 804
19CC1SOFTWAREGLY D:293 , GLN D:298 , LEU D:675 , ASN D:696 , SER D:697 , HOH D:2499BINDING SITE FOR RESIDUE GOL D 805
20CC2SOFTWARETYR D:126 , GLU D:272 , ALA D:275BINDING SITE FOR RESIDUE GOL D 806

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WVX)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Phe A:312 -Pro A:313
2Ser A:387 -Pro A:388
3Ser A:520 -Pro A:521
4Phe B:312 -Pro B:313
5Ser B:387 -Pro B:388
6Ser B:520 -Pro B:521
7Phe C:312 -Pro C:313
8Ser C:387 -Pro C:388
9Ser C:520 -Pro C:521
10Phe D:312 -Pro D:313
11Ser D:387 -Pro D:388
12Ser D:520 -Pro D:521

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WVX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WVX)

(-) Exons   (0, 0)

(no "Exon" information available for 2WVX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:736
 aligned with Q8A0N1_BACTN | Q8A0N1 from UniProtKB/TrEMBL  Length:755

    Alignment length:736
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749      
         Q8A0N1_BACTN    20 KDWTQYVNPLMGSQSTFELSTGNTYPAIARPWGMNFWTPQTGKMGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSIMPIVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEMTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEENKIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVENGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQAAANMNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGYMFTDTGFWDTFRCLFPLLNLMYPSVNKEMQEGLINTYLESGFFPEWASPGHRGCMVGNNSASILVDAYMKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAMNYKNLFDKESKLMRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPPIFDDSYYGQVIHEIREMTVMNMGNYAHGNQPIQHMIYLYDYAGQPWKAQYWLRQVMDRMYTPGPDGYCGDEDNGQTSAWYVFSALGFYPVCPGTDEYVMGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSMSFNGADHTKNYLRHEDLFKGGTIKVDMSNRPNLNRGTKEEDMPYSFSKE 755
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wvxA01                          -2wvxA01 A:20-52,A:54-288,A:313-343  [code=2.70.98.10, no name defined]                                                                                                                                                                     2wvxA02                 2wvxA01                        2wvxA03 A:344-438 alpha-1,2-mannosidase                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------2wvxA02                -2wvxA02 A:289-312,A:608-630,A:632-747 GH92 mannosidase domain                                                       -------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh............................eeeee...............ee.eeeee............eeeeeee...........ee.hhh.eeee..eeeeee....eeeeeee...eeeeeeee..eeeeeeeee.....eeeeeehhh.eeeeee............eeeeeee.....eeeeee..eeee...eeee..eeeeeeeee...eeeeeeeeee..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh....ee..ee.....eeee......eee...ee.eehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhh.....hhhhhhhhhhhhhh............hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.ee....ee.........................hhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhh............hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhee.......eeee......eeeee.....eeeee.........eeeeeee..ee....eeehhhhhhheeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wvx A  20 KDWTQYVNPLmGSQSTFELSTGNTYPAIARPWGmNFWTPQTGKmGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSImPIVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEmTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEENKIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVENGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQAAANmNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGYmFTDTGFWDTFRCLFPLLNLmYPSVNKEmQEGLINTYLESGFFPEWASPGHRGCmVGNNSASILVDAYmKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAmNYKNLFDKESKLmRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLmGGKEmFVTmmDSVFAVPPIFDDSYYGQVIHEIREmTVmNmGNYAHGNQPIQHmIYLYDYAGQPWKAQYWLRQVmDRmYTPGPDGYCGDEDNGQTSAWYVFSALGFYPVCPGTDEYVmGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSmSFNGADHTKNYLRHEDLFKGGTIKVDmSNRPNLNRGTKEEDmPYSFSKE 755
                                    29|       39        49   |    59   |    69        79        89        99       109       119       129       139|      149       159       169       179       189       199       209       219       229       239       249       259   |   269       279       289       299       309       319       329       339|      349       359|      369       379       389    |  399       409       419       429       439       449       459       469       479       489      |499       509       519       529       539       549    |  559   ||  569       579       589  | |  599       609       619       629 |     639       649       659       669 |     679       689       699      |709       719       729   |   739       749      
                                     30-MSE                 53-MSE    63-MSE                             98-MSE                                   140-MSE                                                                                                                    263-MSE                                                                      340-MSE             360-MSE 368-MSE                   394-MSE       408-MSE                                                                                 496-MSE      509-MSE                                      554-MSE|   ||                      589-MSE|          607-MSE              628-MSE                                    671-MSE                            706-MSE                    733-MSE        748-MSE   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     559-MSE|                         592-MSE                                631-MSE                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         563-MSE                        594-MSE                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          564-MSE                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:737
 aligned with Q8A0N1_BACTN | Q8A0N1 from UniProtKB/TrEMBL  Length:755

    Alignment length:737
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         755 
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749     | 
         Q8A0N1_BACTN    20 KDWTQYVNPLMGSQSTFELSTGNTYPAIARPWGMNFWTPQTGKMGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSIMPIVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEMTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEENKIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVENGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQAAANMNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGYMFTDTGFWDTFRCLFPLLNLMYPSVNKEMQEGLINTYLESGFFPEWASPGHRGCMVGNNSASILVDAYMKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAMNYKNLFDKESKLMRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPPIFDDSYYGQVIHEIREMTVMNMGNYAHGNQPIQHMIYLYDYAGQPWKAQYWLRQVMDRMYTPGPDGYCGDEDNGQTSAWYVFSALGFYPVCPGTDEYVMGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSMSFNGADHTKNYLRHEDLFKGGTIKVDMSNRPNLNRGTKEEDMPYSFSKE-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wvxB01                          -2wvxB01 B:20-52,B:54-288,B:313-343  [code=2.70.98.10, no name defined]                                                                                                                                                                     2wvxB02                 2wvxB01                        2wvxB03 B:344-438 alpha-1,2-mannosidase                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------2wvxB02                -2wvxB02 B:289-312,B:608-630,B:632-747 GH92 mannosidase domain                                                       --------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh............................eeeee...............ee.eeeee............eeeeeee...........ee.hhh.eeee..eeeeee....eeeeeee...eeeeeeee..eeeeeeeee.....eeeeeehhh.eeeeee............eeeeeee.....eeeeee..eeee...eeee..eeeeeeeee...eeeeeeeeee..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh....ee..ee.....eeee......eee...ee.eehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhh.....hhhhhhhhhhhhh.............hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.ee....ee.........................hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhee.......eeee......eeeee.....eeeee.........eeeeeee..ee....eeehhhhhhheeeeeeee.........hhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wvx B  20 KDWTQYVNPLmGSQSTFELSTGNTYPAIARPWGmNFWTPQTGKmGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSImPIVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEmTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEENKIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVEQGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQAAANmNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGYmFTDTGFWDTFRCLFPLLNLmYPSVNKEmQEGLINTYLESGFFPEWASPGHRGCmVGNNSASILVDAYmKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAmNYKNLFDKESKLmRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLmGGKEmFVTmmDSVFAVPPIFDDSYYGQVIHEIREmTVmNmGNYAHGNQPIQHmIYLYDYAGQPWKAQYWLRQVmDRmYTPGPDGYCGDEDNGQTSAWYVFSALGFYPVCPGTDEYVmGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSmSFNGADHTKNYLRHEDLFKGGTIKVDmSNRPNLNRGTKEEDmPYSFSKEL 756
                                    29|       39        49   |    59   |    69        79        89        99       109       119       129       139|      149       159       169       179       189       199       209       219       229       239       249       259   |   269       279       289       299       309       319       329       339|      349       359|      369       379       389    |  399       409       419       429       439       449       459       469       479       489      |499       509       519       529       539       549    |  559   ||  569       579       589  | |  599       609       619       629 |     639       649       659       669 |     679       689       699      |709       719       729   |   739       749       
                                     30-MSE                 53-MSE    63-MSE                             98-MSE                                   140-MSE                                                                                                                    263-MSE                                                                      340-MSE             360-MSE 368-MSE                   394-MSE       408-MSE                                                                                 496-MSE      509-MSE                                      554-MSE|   ||                      589-MSE|          607-MSE              628-MSE                                    671-MSE                            706-MSE                    733-MSE        748-MSE    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     559-MSE|                         592-MSE                                631-MSE                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         563-MSE                        594-MSE                                                                                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          564-MSE                                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:736
 aligned with Q8A0N1_BACTN | Q8A0N1 from UniProtKB/TrEMBL  Length:755

    Alignment length:736
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749      
         Q8A0N1_BACTN    20 KDWTQYVNPLMGSQSTFELSTGNTYPAIARPWGMNFWTPQTGKMGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSIMPIVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEMTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEENKIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVENGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQAAANMNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGYMFTDTGFWDTFRCLFPLLNLMYPSVNKEMQEGLINTYLESGFFPEWASPGHRGCMVGNNSASILVDAYMKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAMNYKNLFDKESKLMRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPPIFDDSYYGQVIHEIREMTVMNMGNYAHGNQPIQHMIYLYDYAGQPWKAQYWLRQVMDRMYTPGPDGYCGDEDNGQTSAWYVFSALGFYPVCPGTDEYVMGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSMSFNGADHTKNYLRHEDLFKGGTIKVDMSNRPNLNRGTKEEDMPYSFSKE 755
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wvxC01                          -2wvxC01 C:20-52,C:54-288,C:313-343  [code=2.70.98.10, no name defined]                                                                                                                                                                     2wvxC02                 2wvxC01                        2wvxC03 C:344-438 alpha-1,2-mannosidase                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------2wvxC02                -2wvxC02 C:289-312,C:608-630,C:632-747 GH92 mannosidase domain                                                       -------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh............................eeeee...............ee.eeeee............eeeeeee...........ee.hhh.eeee..eeeeee....eeeeeee...eeeeeeee..eeeeeeeee.....eeeeeehhh.eeeeee............eeeeeee.....eeeeee..eeee...eeee..eeeeeeeee...eeeeeeeeee..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh....ee..ee.....eeee......eee...ee.eehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhh.....hhhhhhhhhhhhh.............hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.ee....ee.........................hhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhh............hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhee.......eeee......eeeee.....eeeee.........eeeeeee..ee....eeehhhhhhheeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wvx C  20 KDWTQYVNPLmGSQSTFELSTGNTYPAIARPWGmNFWTPQTGKmGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSImPIVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEmTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEENKIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVENGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQAAANmNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGYmFTDTGFWDTFRCLFPLLNLmYPSVNKEmQEGLINTYLESGFFPEWASPGHRGCmVGNNSASILVDAYmKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAmNYKNLFDKESKLmRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLmGGKEmFVTmmDSVFAVPPIFDDSYYGQVIHEIREmTVmNmGNYAHGNQPIQHmIYLYDYAGQPWKAQYWLRQVmDRmYTPGPDGYCGDEDNGQTSAWYVFSALGFYPVCPGTDEYVmGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSmSFNGADHTKNYLRHEDLFKGGTIKVDmSNRPNLNRGTKEEDmPYSFSKE 755
                                    29|       39        49   |    59   |    69        79        89        99       109       119       129       139|      149       159       169       179       189       199       209       219       229       239       249       259   |   269       279       289       299       309       319       329       339|      349       359|      369       379       389    |  399       409       419       429       439       449       459       469       479       489      |499       509       519       529       539       549    |  559   ||  569       579       589  | |  599       609       619       629 |     639       649       659       669 |     679       689       699      |709       719       729   |   739       749      
                                     30-MSE                 53-MSE    63-MSE                             98-MSE                                   140-MSE                                                                                                                    263-MSE                                                                      340-MSE             360-MSE 368-MSE                   394-MSE       408-MSE                                                                                 496-MSE      509-MSE                                      554-MSE|   ||                      589-MSE|          607-MSE              628-MSE                                    671-MSE                            706-MSE                    733-MSE        748-MSE   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     559-MSE|                         592-MSE                                631-MSE                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         563-MSE                        594-MSE                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          564-MSE                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:736
 aligned with Q8A0N1_BACTN | Q8A0N1 from UniProtKB/TrEMBL  Length:755

    Alignment length:736
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749      
         Q8A0N1_BACTN    20 KDWTQYVNPLMGSQSTFELSTGNTYPAIARPWGMNFWTPQTGKMGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSIMPIVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEMTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEENKIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVENGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQAAANMNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGYMFTDTGFWDTFRCLFPLLNLMYPSVNKEMQEGLINTYLESGFFPEWASPGHRGCMVGNNSASILVDAYMKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAMNYKNLFDKESKLMRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPPIFDDSYYGQVIHEIREMTVMNMGNYAHGNQPIQHMIYLYDYAGQPWKAQYWLRQVMDRMYTPGPDGYCGDEDNGQTSAWYVFSALGFYPVCPGTDEYVMGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSMSFNGADHTKNYLRHEDLFKGGTIKVDMSNRPNLNRGTKEEDMPYSFSKE 755
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wvxD01                          -2wvxD01 D:20-52,D:54-288,D:313-343  [code=2.70.98.10, no name defined]                                                                                                                                                                     2wvxD02                 2wvxD01                        2wvxD03 D:344-438 alpha-1,2-mannosidase                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------2wvxD02                -2wvxD02 D:289-312,D:608-630,D:632-747 GH92 mannosidase domain                                                       -------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Glyco_hydro_92-2wvxD01 D:228-737                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ------------------ Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Glyco_hydro_92-2wvxD02 D:228-737                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ------------------ Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Glyco_hydro_92-2wvxD03 D:228-737                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ------------------ Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Glyco_hydro_92-2wvxD04 D:228-737                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ------------------ Pfam domains (4)
         Sec.struct. author ..hhhhh............................eeeee...............ee.eeeee............eeeeeee...........ee.hhh.eee....eeeee....eeeeeee...eeeeeeee..eeeeeeeee.....eeeeeehhh.eeeeee............eeeeeee.....eeeeee..eeee...eeee..eeeeeeeee...eeeeeeeeee..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh....ee..ee.....eeee......eee...ee.eehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhh.....hhhhhhhhhhhhhh............hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.ee....ee.........................hhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhh............hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhee.......eeee......eeeee.....eeeee.........eeeeeee..ee....eeehhhhhhheeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wvx D  20 KDWTQYVNPLmGSQSTFELSTGNTYPAIARPWGmNFWTPQTGKmGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSImPIVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEmTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEENKIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVENGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQAAANmNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGYmFTDTGFWDTFRCLFPLLNLmYPSVNKEmQEGLINTYLESGFFPEWASPGHRGCmVGNNSASILVDAYmKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAmNYKNLFDKESKLmRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLmGGKEmFVTmmDSVFAVPPIFDDSYYGQVIHEIREmTVmNmGNYAHGNQPIQHmIYLYDYAGQPWKAQYWLRQVmDRmYTPGPDGYCGDEDNGQTSAWYVFSALGFYPVCPGTDEYVmGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSmSFNGADHTKNYLRHEDLFKGGTIKVDmSNRPNLNRGTKEEDmPYSFSKE 755
                                    29|       39        49   |    59   |    69        79        89        99       109       119       129       139|      149       159       169       179       189       199       209       219       229       239       249       259   |   269       279       289       299       309       319       329       339|      349       359|      369       379       389    |  399       409       419       429       439       449       459       469       479       489      |499       509       519       529       539       549    |  559   ||  569       579       589  | |  599       609       619       629 |     639       649       659       669 |     679       689       699      |709       719       729   |   739       749      
                                     30-MSE                 53-MSE    63-MSE                             98-MSE                                   140-MSE                                                                                                                    263-MSE                                                                      340-MSE             360-MSE 368-MSE                   394-MSE       408-MSE                                                                                 496-MSE      509-MSE                                      554-MSE|   ||                      589-MSE|          607-MSE              628-MSE                                    671-MSE                            706-MSE                    733-MSE        748-MSE   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     559-MSE|                         592-MSE                                631-MSE                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         563-MSE                        594-MSE                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          564-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WVX)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: GH92 mannosidase fold (8)
(-)
Homologous Superfamily: GH92 mannosidase domain (8)
(-)
Bacteroides thetaiotaomicron. Organism_taxid: 226186. Strain: vpi-5482. (8)
1a2wvxA02A:289-312,A:608-630,A:632-747
1b2wvxB02B:289-312,B:608-630,B:632-747
1c2wvxC02C:289-312,C:608-630,C:632-747
1d2wvxD02D:289-312,D:608-630,D:632-747
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Pec_lyase (42)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8A0N1_BACTN | Q8A0N1)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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  2wvx
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8A0N1_BACTN | Q8A0N1: 2wvz 2ww0 2ww1 2ww3 2wzs

(-) Related Entries Specified in the PDB File

2wvy STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482
2wvz STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482
2ww0 STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482
2ww1 STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 IN COMPLEX WITH MANNOIMIDAZOLE
2ww2 STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT2199 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482
2ww3 STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 IN COMPLEX WITH MANNOIMIDAZOLE