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(-) Description

Title :  MUTATION OF THR163 TO SER IN HUMAN THYMIDINE KINASE SHIFTS THE SPECIFICITY FROM THYMIDINE TOWARDS THE NUCLEOSIDE ANALOGUE AZIDOTHYMIDINE
 
Authors :  T. Skovgaard, U. Uhlin, B. Munch-Petersen
Date :  17 Oct 09  (Deposition) - 27 Oct 09  (Release) - 02 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Zinc-Binding Domain, Deoxyribonucleoside Kinase, Feedback Inhibitor, Nucleotide-Binding, Kinase, Cytoplasm, Transferase, Atp-Binding, Dna Synthesis, Phosphoprotein, Phosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Skovgaard, U. Uhlin, B. Munch-Petersen
Comparative Active-Site Mutation Study Of Human And Caenorhabditis Elegans Thymidine Kinase 1.
Febs J. V. 279 1777 2012
PubMed-ID: 22385435  |  Reference-DOI: 10.1111/J.1742-4658.2012.08554.X

(-) Compounds

Molecule 1 - THYMIDINE KINASE, CYTOSOLIC
    ChainsA, B, C, D, E, F, G, H
    EC Number2.7.1.21
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX-2THUTK1-CDELTA41
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentRESIDUES 1-193
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsTTP FEEDBACK INHIBITOR
    SynonymTHYMIDINE KINASE 1

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric Unit (3, 19)
No.NameCountTypeFull Name
1MG3Ligand/IonMAGNESIUM ION
2TTP8Ligand/IonTHYMIDINE-5'-TRIPHOSPHATE
3ZN8Ligand/IonZINC ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TTP4Ligand/IonTHYMIDINE-5'-TRIPHOSPHATE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TTP4Ligand/IonTHYMIDINE-5'-TRIPHOSPHATE
3ZN-1Ligand/IonZINC ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:28 , SER A:30 , GLY A:31 , LYS A:32 , SER A:33 , ASP A:58 , ARG A:60 , ASP A:97 , GLU A:98 , GLN A:100 , PHE A:101 , LEU A:124 , THR A:127 , PHE A:128 , PHE A:133 , SER A:163 , VAL A:172 , GLU A:173 , VAL A:174 , ILE A:175 , GLY A:176 , TYR A:181 , HOH A:2116 , HOH A:2117 , HOH A:2118 , HOH A:2119BINDING SITE FOR RESIDUE TTP A1192
02AC2SOFTWARESER B:30 , GLY B:31 , LYS B:32 , SER B:33 , ASP B:58 , ARG B:60 , ASP B:97 , GLU B:98 , GLN B:100 , PHE B:101 , LEU B:124 , THR B:127 , PHE B:128 , PHE B:133 , SER B:163 , VAL B:172 , GLU B:173 , VAL B:174 , ILE B:175 , GLY B:176 , TYR B:181 , HOH B:2135 , HOH B:2136 , HOH B:2137 , HOH B:2139BINDING SITE FOR RESIDUE TTP B1193
03AC3SOFTWAREMET C:28 , SER C:30 , GLY C:31 , LYS C:32 , SER C:33 , ASP C:58 , ARG C:60 , ASP C:97 , GLU C:98 , GLN C:100 , PHE C:101 , LEU C:124 , THR C:127 , PHE C:128 , PHE C:133 , SER C:163 , VAL C:172 , GLU C:173 , VAL C:174 , ILE C:175 , GLY C:176 , TYR C:181 , HOH C:2119 , HOH C:2120 , HOH C:2121 , HOH C:2123BINDING SITE FOR RESIDUE TTP C1192
04AC4SOFTWAREMET D:28 , PHE D:29 , SER D:30 , GLY D:31 , LYS D:32 , SER D:33 , ASP D:58 , ARG D:60 , GLU D:98 , PHE D:101 , LEU D:124 , THR D:127 , PHE D:128 , PHE D:133 , SER D:163 , ARG D:165 , VAL D:172 , GLU D:173 , VAL D:174 , ILE D:175 , GLY D:176 , TYR D:181 , MG D:1193 , HOH D:2056 , HOH D:2135 , HOH D:2136 , HOH D:2137 , HOH D:2138BINDING SITE FOR RESIDUE TTP D1192
05AC5SOFTWAREMET E:28 , SER E:30 , GLY E:31 , LYS E:32 , SER E:33 , ASP E:58 , ARG E:60 , ASP E:97 , GLU E:98 , GLN E:100 , PHE E:101 , LEU E:124 , THR E:127 , PHE E:128 , PHE E:133 , SER E:163 , ARG E:165 , VAL E:172 , GLU E:173 , VAL E:174 , ILE E:175 , GLY E:176 , TYR E:181 , HOH E:2116 , HOH E:2117 , HOH E:2119BINDING SITE FOR RESIDUE TTP E1192
06AC6SOFTWAREMET F:28 , SER F:30 , GLY F:31 , LYS F:32 , SER F:33 , ASP F:58 , ASP F:97 , GLU F:98 , GLN F:100 , PHE F:101 , LEU F:124 , THR F:127 , PHE F:128 , PHE F:133 , SER F:163 , VAL F:172 , GLU F:173 , VAL F:174 , ILE F:175 , GLY F:176 , TYR F:181 , HOH F:2116 , HOH F:2117 , HOH F:2118BINDING SITE FOR RESIDUE TTP F1192
07AC7SOFTWAREMET G:28 , PHE G:29 , SER G:30 , GLY G:31 , LYS G:32 , SER G:33 , ASP G:58 , ARG G:60 , GLU G:98 , PHE G:101 , LEU G:124 , THR G:127 , PHE G:128 , PHE G:133 , SER G:163 , ARG G:165 , VAL G:172 , GLU G:173 , VAL G:174 , ILE G:175 , GLY G:176 , TYR G:181 , MG G:1193 , HOH G:2061 , HOH G:2093 , HOH G:2162 , HOH G:2163 , HOH G:2164BINDING SITE FOR RESIDUE TTP G1192
08AC8SOFTWAREMET H:28 , PHE H:29 , SER H:30 , GLY H:31 , LYS H:32 , SER H:33 , ASP H:58 , ARG H:60 , GLU H:98 , PHE H:101 , LEU H:124 , THR H:127 , PHE H:128 , PHE H:133 , SER H:163 , ARG H:165 , VAL H:172 , GLU H:173 , VAL H:174 , ILE H:175 , GLY H:176 , TYR H:181 , MG H:1193 , HOH H:2150 , HOH H:2151 , HOH H:2152 , HOH H:2153BINDING SITE FOR RESIDUE TTP H1192
09AC9SOFTWARESER D:33 , TTP D:1192 , HOH D:2009 , HOH D:2056 , HOH D:2057BINDING SITE FOR RESIDUE MG D1193
10BC1SOFTWARESER G:33 , TTP G:1192 , HOH G:2014 , HOH G:2092BINDING SITE FOR RESIDUE MG G1193
11BC2SOFTWARESER H:33 , TTP H:1192 , HOH H:2013 , HOH H:2077BINDING SITE FOR RESIDUE MG H1193
12BC3SOFTWARECYS A:153 , CYS A:156 , CYS A:185 , CYS A:188BINDING SITE FOR RESIDUE ZN A1193
13BC4SOFTWARECYS B:153 , CYS B:156 , CYS B:185 , CYS B:188BINDING SITE FOR RESIDUE ZN B1194
14BC5SOFTWARECYS C:153 , CYS C:156 , CYS C:185 , CYS C:188BINDING SITE FOR RESIDUE ZN C1193
15BC6SOFTWARECYS D:153 , CYS D:156 , CYS D:185 , CYS D:188BINDING SITE FOR RESIDUE ZN D1194
16BC7SOFTWARECYS E:153 , CYS E:156 , CYS E:185 , CYS E:188BINDING SITE FOR RESIDUE ZN E1193
17BC8SOFTWARECYS F:153 , CYS F:156 , CYS F:185 , CYS F:188BINDING SITE FOR RESIDUE ZN F1193
18BC9SOFTWARECYS G:153 , CYS G:156 , CYS G:185 , CYS G:188BINDING SITE FOR RESIDUE ZN G1194
19CC1SOFTWARECYS H:153 , CYS H:156 , CYS H:185 , CYS H:188BINDING SITE FOR RESIDUE ZN H1194

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WVJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser H:62 -Ser H:63

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WVJ)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TK_CELLULAR_TYPEPS00603 Thymidine kinase cellular-type signature.KITH_HUMAN176-189
 
 
 
 
 
 
 
  8A:176-189
B:176-189
C:176-189
D:176-189
E:176-189
F:176-189
G:176-189
H:176-189
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TK_CELLULAR_TYPEPS00603 Thymidine kinase cellular-type signature.KITH_HUMAN176-189
 
 
 
 
 
 
 
  4A:176-189
B:176-189
C:176-189
D:176-189
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TK_CELLULAR_TYPEPS00603 Thymidine kinase cellular-type signature.KITH_HUMAN176-189
 
 
 
 
 
 
 
  4-
-
-
-
E:176-189
F:176-189
G:176-189
H:176-189

(-) Exons   (7, 56)

Asymmetric Unit (7, 56)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003016341aENSE00001563417chr17:76183314-76183010305KITH_HUMAN1-22228A:18-22
B:18-22
C:18-22
D:18-22
E:18-22
F:18-22
G:18-22
H:18-22
5
5
5
5
5
5
5
5
1.2ENST000003016342ENSE00001118176chr17:76182899-7618286832KITH_HUMAN23-33118A:23-33
B:23-33
C:23-33
D:23-33
E:23-33
F:23-33
G:23-33
H:23-33
11
11
11
11
11
11
11
11
1.3ENST000003016343ENSE00001194741chr17:76181246-76181136111KITH_HUMAN33-70388A:33-60
B:33-60
C:33-60
D:33-62
E:33-60
F:33-60
G:33-61
H:33-64
28
28
28
30
28
28
29
32
1.4ENST000003016344ENSE00001118177chr17:76178763-7617867094KITH_HUMAN70-101328A:75-101
B:75-101
C:75-101
D:75-101
E:75-101
F:75-101
G:75-101
H:73-101
27
27
27
27
27
27
27
29
1.5ENST000003016345ENSE00001118174chr17:76171699-7617161090KITH_HUMAN102-131308A:102-131
B:102-131
C:102-131
D:102-131
E:102-131
F:102-131
G:102-131
H:102-131
30
30
30
30
30
30
30
30
1.6ENST000003016346ENSE00001118182chr17:76171250-76171131120KITH_HUMAN132-171408A:132-171
B:132-171
C:132-171
D:132-171
E:132-171
F:132-171
G:132-171
H:132-171
40
40
40
40
40
40
40
40
1.7bENST000003016347bENSE00001274786chr17:76171031-76170160872KITH_HUMAN172-234638A:172-191
B:172-192
C:172-191
D:172-191
E:172-191
F:172-191
G:172-191
H:172-191
20
21
20
20
20
20
20
20

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with KITH_HUMAN | P04183 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:174
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    
           KITH_HUMAN    18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
               SCOP domains d2wvja1 A:18-150 automated matches                                                                                                   d2wvja2 A:151-191 automated matches       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhhh...eeeeee.....--------------.eee.hhhhhhhhhhh..eeee.hhhhh.hhhhhhhhhhhh..eeeee............hhhhhhhhh.eeee..ee......ee.eeee...............eeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY-- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2   ------------------------------------Exon 1.4  PDB: A:75-101         Exon 1.5  PDB: A:102-131      Exon 1.6  PDB: A:132-171                Exon 1.7b            Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: A:33-60 UniProt: 33-70 ------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2wvj A  18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR--------------ALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
                                    27        37        47        57  |      -       |77        87        97       107       117       127       137       147       157       167       177       187    
                                                                     60             75                                                                                                                    

Chain B from PDB  Type:PROTEIN  Length:161
 aligned with KITH_HUMAN | P04183 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:175
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187     
           KITH_HUMAN    18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFKK 192
               SCOP domains d2wvjb1 B:18-150 automated matches                                                                                                   d2wvjb2 B:151-192 automated matches        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhhh...eeeeee.....--------------.eee.hhhhhhhhhhh..eeee.hhhhh.hhhhhhhhhhhh..eeeee............hhhhhhhhh.eeee..ee......ee.eeee...............eeeehhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY--- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2   ------------------------------------Exon 1.4  PDB: B:75-101         Exon 1.5  PDB: B:102-131      Exon 1.6  PDB: B:132-171                Exon 1.7b             Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: B:33-60 UniProt: 33-70 -------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2wvj B  18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR--------------ALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSVCRLCYFKK 192
                                    27        37        47        57  |      -       |77        87        97       107       117       127       137       147       157       167       177       187     
                                                                     60             75                                                                                                                     

Chain C from PDB  Type:PROTEIN  Length:160
 aligned with KITH_HUMAN | P04183 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:174
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    
           KITH_HUMAN    18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
               SCOP domains d2wvjc1 C:18-150 automated matches                                                                                                   d2wvjc2 C:151-191 automated matches       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh....eeeeee.....--------------.eee.hhhhhhhhhhh..eeee.hhhhh.hhhhhhhhhhhh..eeeee............hhhhhhhhh.eeee..ee......ee.eeee...............eeeehhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY-- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2   ------------------------------------Exon 1.4  PDB: C:75-101         Exon 1.5  PDB: C:102-131      Exon 1.6  PDB: C:132-171                Exon 1.7b            Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: C:33-60 UniProt: 33-70 ------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2wvj C  18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR--------------ALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
                                    27        37        47        57  |      -       |77        87        97       107       117       127       137       147       157       167       177       187    
                                                                     60             75                                                                                                                    

Chain D from PDB  Type:PROTEIN  Length:162
 aligned with KITH_HUMAN | P04183 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:174
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    
           KITH_HUMAN    18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
               SCOP domains d2wvjd1 D:18-150 automated matches                                                                                                   d2wvjd2 D:151-191 automated matches       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh....eeeeee.......------------.eee.hhhhhhhhhhh..eeeee.hhhh.hhhhhhhhhhhh..eeeee............hhhhhhhhh.eeee..ee......ee.eeee...............eeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY-- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2   ------------------------------------Exon 1.4  PDB: D:75-101         Exon 1.5  PDB: D:102-131      Exon 1.6  PDB: D:132-171                Exon 1.7b            Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: D:33-62 UniProt: 33-70 ------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2wvj D  18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS------------ALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
                                    27        37        47        57    |    -       |77        87        97       107       117       127       137       147       157       167       177       187    
                                                                       62           75                                                                                                                    

Chain E from PDB  Type:PROTEIN  Length:160
 aligned with KITH_HUMAN | P04183 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:174
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    
           KITH_HUMAN    18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
               SCOP domains d2wvje1 E:18-150 automated matches                                                                                                   d2wvje2 E:151-191 automated matches       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhhh...eeeeee.....--------------.eee.hhhhhhhhhhh..eeeeehhhhh.hhhhhhhhhhhh..eeeee............hhhhhhhhh.eeee..ee......ee.eeee...............eeeehhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY-- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2   ------------------------------------Exon 1.4  PDB: E:75-101         Exon 1.5  PDB: E:102-131      Exon 1.6  PDB: E:132-171                Exon 1.7b            Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: E:33-60 UniProt: 33-70 ------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2wvj E  18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR--------------ALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
                                    27        37        47        57  |      -       |77        87        97       107       117       127       137       147       157       167       177       187    
                                                                     60             75                                                                                                                    

Chain F from PDB  Type:PROTEIN  Length:160
 aligned with KITH_HUMAN | P04183 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:174
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    
           KITH_HUMAN    18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
               SCOP domains d2wvjf1 F:18-150 automated matches                                                                                                   d2wvjf2 F:151-191 automated matches       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh....eeeeee.....--------------.eee.hhhhhhhhhhh..eeee.hhhhh.hhhhhhhhhhhh..eeeee............hhhhhhhhh.eeee..ee......ee.eeee...............eeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY-- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2   ------------------------------------Exon 1.4  PDB: F:75-101         Exon 1.5  PDB: F:102-131      Exon 1.6  PDB: F:132-171                Exon 1.7b            Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: F:33-60 UniProt: 33-70 ------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2wvj F  18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR--------------ALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
                                    27        37        47        57  |      -       |77        87        97       107       117       127       137       147       157       167       177       187    
                                                                     60             75                                                                                                                    

Chain G from PDB  Type:PROTEIN  Length:161
 aligned with KITH_HUMAN | P04183 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:174
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    
           KITH_HUMAN    18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
               SCOP domains d2wvjg1 G:18-150 automated matches                                                                                                   d2wvjg2 G:151-191 automated matches       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh....eeeeee......-------------.eee.hhhhhhhhhhh..eeeee.hhhh.hhhhhhhhhhhh..eeeee............hhhhhhhhh.eeee..ee......ee.eeee...............eeeehhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY-- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2   ------------------------------------Exon 1.4  PDB: G:75-101         Exon 1.5  PDB: G:102-131      Exon 1.6  PDB: G:132-171                Exon 1.7b            Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: G:33-61 UniProt: 33-70 ------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2wvj G  18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRY-------------ALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
                                    27        37        47        57   |     -       |77        87        97       107       117       127       137       147       157       167       177       187    
                                                                      61            75                                                                                                                    

Chain H from PDB  Type:PROTEIN  Length:166
 aligned with KITH_HUMAN | P04183 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:174
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    
           KITH_HUMAN    18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
               SCOP domains d2wvjh1 H:18-150 automated matches                                                                                                   d2wvjh2 H:151-191 automated matches       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -TK-2wvjH01 H:19-189                                                                                                                                                        -- Pfam domains (1)
           Pfam domains (2) -TK-2wvjH02 H:19-189                                                                                                                                                        -- Pfam domains (2)
           Pfam domains (3) -TK-2wvjH03 H:19-189                                                                                                                                                        -- Pfam domains (3)
           Pfam domains (4) -TK-2wvjH04 H:19-189                                                                                                                                                        -- Pfam domains (4)
           Pfam domains (5) -TK-2wvjH05 H:19-189                                                                                                                                                        -- Pfam domains (5)
           Pfam domains (6) -TK-2wvjH06 H:19-189                                                                                                                                                        -- Pfam domains (6)
           Pfam domains (7) -TK-2wvjH07 H:19-189                                                                                                                                                        -- Pfam domains (7)
           Pfam domains (8) -TK-2wvjH08 H:19-189                                                                                                                                                        -- Pfam domains (8)
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh....eeeeee.........--------.eeeee.hhhhhhhhhhh..eeee.hhhhh.hhhhhhhhhhhh..eeeee............hhhhhhhhh.eeee..ee......ee.eeee...............eeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY-- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2   ------------------------------------Exon 1.4  PDB: H:73-101         Exon 1.5  PDB: H:102-131      Exon 1.6  PDB: H:132-171                Exon 1.7b            Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: H:33-64 UniProt: 33-70 ------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2wvj H  18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS--------MEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSVCRLCYFK 191
                                    27        37        47        57      |  -     |  77        87        97       107       117       127       137       147       157       167       177       187    
                                                                         64       73                                                                                                                      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WVJ)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Family: TK (9)
1aTK-2wvjH01H:19-189
1bTK-2wvjH02H:19-189
1cTK-2wvjH03H:19-189
1dTK-2wvjH04H:19-189
1eTK-2wvjH05H:19-189
1fTK-2wvjH06H:19-189
1gTK-2wvjH07H:19-189
1hTK-2wvjH08H:19-189

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (KITH_HUMAN | P04183)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019206    nucleoside kinase activity    Catalysis of the reaction: ATP + nucleoside = ADP + nucleoside monophosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004797    thymidine kinase activity    Catalysis of the reaction: ATP + thymidine = ADP + thymidine 5'-phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0071897    DNA biosynthetic process    The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0006259    DNA metabolic process    Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
    GO:0009157    deoxyribonucleoside monophosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar.
    GO:0048565    digestive tract development    The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
    GO:0060138    fetal process involved in parturition    A reproductive process occurring in the embryo that results in birth.
    GO:0001889    liver development    The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
    GO:0006139    nucleobase-containing compound metabolic process    Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
    GO:0009165    nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
    GO:0043097    pyrimidine nucleoside salvage    Any process that generates a pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose, from derivatives of it, without de novo synthesis.
    GO:0046688    response to copper ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus.
    GO:0051414    response to cortisol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisol stimulus. Cortisol is the major natural glucocorticoid synthesized in the zona fasciculata of the adrenal cortex; it affects the metabolism of glucose, protein, and fats and has appreciable mineralocorticoid activity. It also regulates the immune system and affects many other functions.
    GO:0031667    response to nutrient levels    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0009636    response to toxic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
    GO:0014856    skeletal muscle cell proliferation    The multiplication or reproduction of skeletal muscle cells, resulting in the expansion of a cell population.
    GO:0046104    thymidine metabolic process    The chemical reactions and pathways involving thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KITH_HUMAN | P041831w4r 1xbt 2orv

(-) Related Entries Specified in the PDB File

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