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(-) Description

Title :  CRYSTAL STRUCTURE OF CU-FORM CZCE FROM C. METALLIDURANS CH34
 
Authors :  I. Haertlein, E. Girard, G. Sarret, J. Hazemann, P. Gourhant, R. Kahn, J
Date :  18 Sep 09  (Deposition) - 18 Aug 10  (Release) - 29 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Keywords :  Metal Binding Protein, Heavy Metal, Copper Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Petit-Haertlein, E. Girard, G. Sarret, J. Hazemann, P. Gourhant, R. Kahn, J. Coves
Evidence For Conformational Changes Upon Copper Binding To Cupriavidus Metallidurans Czce.
Biochemistry V. 49 1913 2010
PubMed-ID: 20112954  |  Reference-DOI: 10.1021/BI100001Z
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ORF131 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: RALSTONIA METALLIDURANS CH34
    Organism Taxid: 266264
    Synonym: CZCE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 19)

Asymmetric Unit (6, 19)
No.NameCountTypeFull Name
1CL10Ligand/IonCHLORIDE ION
2CU3Ligand/IonCOPPER (II) ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
4MG1Ligand/IonMAGNESIUM ION
5PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
6TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CU-1Ligand/IonCOPPER (II) ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
4MG-1Ligand/IonMAGNESIUM ION
5PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
6TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:100 , ARG A:101 , ASP A:103 , HOH A:2055 , ASP B:77 , ASP B:100 , ARG B:101 , CU B:1108 , CL B:1110 , HOH B:2089BINDING SITE FOR RESIDUE TRS B1105
02AC2SOFTWAREMET B:20 , ARG B:23 , HIS B:24 , LEU B:27 , ALA B:72 , GLN B:73 , CL B:1113BINDING SITE FOR RESIDUE PEG B1106
03AC3SOFTWAREHIS A:24 , GLY A:29 , ASP A:30 , ARG A:48 , GLY A:55 , THR A:70 , PHE A:71 , ALA A:72 , GLN A:73 , CU A:1109 , HOH A:2016 , HOH A:2104 , HOH A:2105BINDING SITE FOR RESIDUE PEG A1107
04AC4SOFTWAREALA B:21 , LYS B:22 , ALA B:25 , THR B:26 , TRP B:69 , LEU B:84 , LEU B:85 , HOH B:2093 , HOH B:2094BINDING SITE FOR RESIDUE PEG B1107
05AC5SOFTWARETHR A:26 , GLY A:29 , ASP A:30 , PRO A:31 , TRP A:69 , ARG A:76 , ASP A:77 , HOH A:2077 , HOH A:2106BINDING SITE FOR RESIDUE EDO A1108
06AC6SOFTWAREASP A:100 , MG A:1110 , ASP B:100 , TRS B:1105 , HOH B:2089BINDING SITE FOR RESIDUE CU B1108
07AC7SOFTWAREHIS B:24 , CL B:1113BINDING SITE FOR RESIDUE CU B1109
08AC8SOFTWAREHIS A:24 , PEG A:1107 , HOH A:2103BINDING SITE FOR RESIDUE CU A1109
09AC9SOFTWAREASP A:100 , HOH A:2075 , HOH A:2076 , HOH A:2096 , ASP B:100 , CU B:1108 , HOH B:2087 , HOH B:2089BINDING SITE FOR RESIDUE MG A1110
10BC1SOFTWAREARG A:39 , VAL A:50 , ASN A:51 , ARG B:39 , ASN B:51BINDING SITE FOR RESIDUE CL A1111
11BC2SOFTWARELYS A:22 , ARG A:76 , ASP A:77 , ARG A:101BINDING SITE FOR RESIDUE CL A1112
12BC3SOFTWAREASP B:77 , TRS B:1105BINDING SITE FOR RESIDUE CL B1110
13BC4SOFTWAREHIS A:24 , GLN A:73 , ASP A:81 , ARG A:96BINDING SITE FOR RESIDUE CL A1113
14BC5SOFTWAREARG B:48 , GLU B:64 , ILE B:66BINDING SITE FOR RESIDUE CL B1111
15BC6SOFTWAREARG A:39 , ILE A:40 , GLY B:46 , MET B:47 , HOH B:2046BINDING SITE FOR RESIDUE CL A1114
16BC7SOFTWAREMET A:86 , ASP A:88 , HOH A:2065BINDING SITE FOR RESIDUE CL A1115
17BC8SOFTWAREMET B:86 , PRO B:87 , ASP B:88 , HOH B:2063BINDING SITE FOR RESIDUE CL B1112
18BC9SOFTWAREHIS B:24 , MET B:74 , VAL B:75 , PEG B:1106 , CU B:1109 , HOH B:2072BINDING SITE FOR RESIDUE CL B1113
19CC1SOFTWAREGLY B:46 , MET B:47 , ARG B:48 , HOH B:2045BINDING SITE FOR RESIDUE CL B1114

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WTP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WTP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WTP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WTP)

(-) Exons   (0, 0)

(no "Exon" information available for 2WTP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:93
 aligned with Q1LAJ1_CUPMC | Q1LAJ1 from UniProtKB/TrEMBL  Length:133

    Alignment length:93
                                    47        57        67        77        87        97       107       117       127   
         Q1LAJ1_CUPMC    38 STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF 130
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheeeeehhhhh.eeeee....eeeeeee.eeeeeee..eeeeeeee....eeeeehhhhh........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 2wtp A  13 STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF 105
                                    22        32        42        52        62        72        82        92       102   


Chain A from PDB  Type:PROTEIN  Length:93
 aligned with Q58AL9_CUPMC | Q58AL9 from UniProtKB/TrEMBL  Length:131

    Alignment length:93
                                    45        55        65        75        85        95       105       115       125   
         Q58AL9_CUPMC    36 STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF 128
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheeeeehhhhh.eeeee....eeeeeee.eeeeeee..eeeeeeee....eeeeehhhhh........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 2wtp A  13 STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF 105
                                    22        32        42        52        62        72        82        92       102   


Chain B from PDB  Type:PROTEIN  Length:89
 aligned with Q1LAJ1_CUPMC | Q1LAJ1 from UniProtKB/TrEMBL  Length:133

    Alignment length:89
                                    50        60        70        80        90       100       110       120         
         Q1LAJ1_CUPMC    41 TAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDL 129
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhheeeeehhhhh.eeeee....eeeeeee.eeeeeee..eeeeeeee....eeeeehhhhh........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2wtp B  16 TAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDL 104
                                    25        35        45        55        65        75        85        95         


Chain B from PDB  Type:PROTEIN  Length:89
 aligned with Q58AL9_CUPMC | Q58AL9 from UniProtKB/TrEMBL  Length:131

    Alignment length:89
                                    48        58        68        78        88        98       108       118         
         Q58AL9_CUPMC    39 TAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDL 127
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhheeeeehhhhh.eeeee....eeeeeee.eeeeeee..eeeeeeee....eeeeehhhhh........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2wtp B  16 TAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDL 104
                                    25        35        45        55        65        75        85        95
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WTP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WTP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WTP)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q1LAJ1_CUPMC | Q1LAJ1)

Chain A,B   (Q58AL9_CUPMC | Q58AL9)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
biological process
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.

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(-) Related Entries Specified in the PDB File

2wto CRYSTAL STRUCTURE OF APO-FORM CZCE FROM C. METALLIDURANS CH34