2WTP - JenaLib

Title :   CRYSTAL STRUCTURE OF CU-FORM CZCE FROM C. METALLIDURANS CH34

Authors :   I. Haertlein, E. Girard, G. Sarret, J. Hazemann, P. Gourhant, R. Kahn, J

Date :   18 Sep 09 (Deposition) - 18 Aug 10 (Release) - 29 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)

Keywords :   Metal Binding Protein, Heavy Metal, Copper Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Petit-Haertlein, E. Girard, G. Sarret, J. Hazemann, P. Gourhant, R. Kahn, J. Coves
Evidence For Conformational Changes Upon Copper Binding To Cupriavidus Metallidurans Czce.
Biochemistry V. 49 1913 2010
PubMed-ID: 20112954 | Reference-DOI: 10.1021/BI100001Z
(for further references see the PDB file header)

Compounds

Molecule 1 - ORF131 PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET30A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	RALSTONIA METALLIDURANS CH34
	Organism Taxid	:	266264
	Synonym	:	CZCE

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (6, 19)

Asymmetric Unit (6, 19)

No.	Name	Count	Type	Full Name
1	CL	10	Ligand/Ion	CHLORIDE ION
2	CU	3	Ligand/Ion	COPPER (II) ION
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	MG	1	Ligand/Ion	MAGNESIUM ION
5	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER
6	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER
6	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Sites (19, 19)

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:100 , ARG A:101 , ASP A:103 , HOH A:2055 , ASP B:77 , ASP B:100 , ARG B:101 , CU B:1108 , CL B:1110 , HOH B:2089	BINDING SITE FOR RESIDUE TRS B1105
02	AC2	SOFTWARE	MET B:20 , ARG B:23 , HIS B:24 , LEU B:27 , ALA B:72 , GLN B:73 , CL B:1113	BINDING SITE FOR RESIDUE PEG B1106
03	AC3	SOFTWARE	HIS A:24 , GLY A:29 , ASP A:30 , ARG A:48 , GLY A:55 , THR A:70 , PHE A:71 , ALA A:72 , GLN A:73 , CU A:1109 , HOH A:2016 , HOH A:2104 , HOH A:2105	BINDING SITE FOR RESIDUE PEG A1107
04	AC4	SOFTWARE	ALA B:21 , LYS B:22 , ALA B:25 , THR B:26 , TRP B:69 , LEU B:84 , LEU B:85 , HOH B:2093 , HOH B:2094	BINDING SITE FOR RESIDUE PEG B1107
05	AC5	SOFTWARE	THR A:26 , GLY A:29 , ASP A:30 , PRO A:31 , TRP A:69 , ARG A:76 , ASP A:77 , HOH A:2077 , HOH A:2106	BINDING SITE FOR RESIDUE EDO A1108
06	AC6	SOFTWARE	ASP A:100 , MG A:1110 , ASP B:100 , TRS B:1105 , HOH B:2089	BINDING SITE FOR RESIDUE CU B1108
07	AC7	SOFTWARE	HIS B:24 , CL B:1113	BINDING SITE FOR RESIDUE CU B1109
08	AC8	SOFTWARE	HIS A:24 , PEG A:1107 , HOH A:2103	BINDING SITE FOR RESIDUE CU A1109
09	AC9	SOFTWARE	ASP A:100 , HOH A:2075 , HOH A:2076 , HOH A:2096 , ASP B:100 , CU B:1108 , HOH B:2087 , HOH B:2089	BINDING SITE FOR RESIDUE MG A1110
10	BC1	SOFTWARE	ARG A:39 , VAL A:50 , ASN A:51 , ARG B:39 , ASN B:51	BINDING SITE FOR RESIDUE CL A1111
11	BC2	SOFTWARE	LYS A:22 , ARG A:76 , ASP A:77 , ARG A:101	BINDING SITE FOR RESIDUE CL A1112
12	BC3	SOFTWARE	ASP B:77 , TRS B:1105	BINDING SITE FOR RESIDUE CL B1110
13	BC4	SOFTWARE	HIS A:24 , GLN A:73 , ASP A:81 , ARG A:96	BINDING SITE FOR RESIDUE CL A1113
14	BC5	SOFTWARE	ARG B:48 , GLU B:64 , ILE B:66	BINDING SITE FOR RESIDUE CL B1111
15	BC6	SOFTWARE	ARG A:39 , ILE A:40 , GLY B:46 , MET B:47 , HOH B:2046	BINDING SITE FOR RESIDUE CL A1114
16	BC7	SOFTWARE	MET A:86 , ASP A:88 , HOH A:2065	BINDING SITE FOR RESIDUE CL A1115
17	BC8	SOFTWARE	MET B:86 , PRO B:87 , ASP B:88 , HOH B:2063	BINDING SITE FOR RESIDUE CL B1112
18	BC9	SOFTWARE	HIS B:24 , MET B:74 , VAL B:75 , PEG B:1106 , CU B:1109 , HOH B:2072	BINDING SITE FOR RESIDUE CL B1113
19	CC1	SOFTWARE	GLY B:46 , MET B:47 , ARG B:48 , HOH B:2045	BINDING SITE FOR RESIDUE CL B1114

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:93
 aligned with Q1LAJ1_CUPMC | Q1LAJ1 from UniProtKB/TrEMBL  Length:133

    Alignment length:93
                                    47        57        67        77        87        97       107       117       127   
         Q1LAJ1_CUPMC    38 STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF 130
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheeeeehhhhh.eeeee....eeeeeee.eeeeeee..eeeeeeee....eeeeehhhhh........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 2wtp A  13 STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF 105
                                    22        32        42        52        62        72        82        92       102

Chain A from PDB  Type:PROTEIN  Length:93
 aligned with Q58AL9_CUPMC | Q58AL9 from UniProtKB/TrEMBL  Length:131

    Alignment length:93
                                    45        55        65        75        85        95       105       115       125   
         Q58AL9_CUPMC    36 STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF 128
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheeeeehhhhh.eeeee....eeeeeee.eeeeeee..eeeeeeee....eeeeehhhhh........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 2wtp A  13 STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF 105
                                    22        32        42        52        62        72        82        92       102

Chain B from PDB  Type:PROTEIN  Length:89
 aligned with Q1LAJ1_CUPMC | Q1LAJ1 from UniProtKB/TrEMBL  Length:133

    Alignment length:89
                                    50        60        70        80        90       100       110       120         
         Q1LAJ1_CUPMC    41 TAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDL 129
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhheeeeehhhhh.eeeee....eeeeeee.eeeeeee..eeeeeeee....eeeeehhhhh........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2wtp B  16 TAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDL 104
                                    25        35        45        55        65        75        85        95

Chain B from PDB  Type:PROTEIN  Length:89
 aligned with Q58AL9_CUPMC | Q58AL9 from UniProtKB/TrEMBL  Length:131

    Alignment length:89
                                    48        58        68        78        88        98       108       118         
         Q58AL9_CUPMC    39 TAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDL 127
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhheeeeehhhhh.eeeee....eeeeeee.eeeeeee..eeeeeeee....eeeeehhhhh........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2wtp B  16 TAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFAQMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDL 104
                                    25        35        45        55        65        75        85        95

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

Asymmetric Unit(show GO term definitions)

Chain A,B (Q1LAJ1_CUPMC | Q1LAJ1)

Chain A,B (Q58AL9_CUPMC | Q58AL9)

molecular function
	GO:0016787	hydrolase activity
	GO:0008168	methyltransferase activity
biological process
	GO:0032259	methylation

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Description