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(-) Description

Title :  TANDEM GNAT PROTEIN FROM THE CLAVULANIC ACID BIOSYNTHESIS PATHWAY (WITHOUT ACCOA)
 
Authors :  A. Iqbal, H. Arunlanantham, M. A. Mcdonough, R. Chowdhury, I. J. Clifton
Date :  11 Aug 09  (Deposition) - 29 Dec 09  (Release) - 09 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.38
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Transferase, Acetyl Transferase, Antibiotic Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Iqbal, H. Arunlanantham, T. Brown, R. Chowdhury, I. J. Clifton, N. J. Kershaw, K. S. Hewitson, M. A. Mcdonough, C. J. Schofield
Crystallographic And Mass Spectrometric Analyses Of A Tandem Gnat Protein From The Clavulanic Acid Biosynthesis Pathway.
Proteins V. 78 1398 2010
PubMed-ID: 20014241  |  Reference-DOI: 10.1002/PROT.22653

(-) Compounds

Molecule 1 - ORF14
    Chains: A, B, C, D
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET24A
    Organism Scientific: STREPTOMYCES CLAVULIGERUS
    Organism Taxid: 1901
    Other Details: SELENO-METHIONINE LABELLED
    Synonym: TANDEM GCN5 RELATED N-ACETYL TRANSFERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 28)

Asymmetric Unit (2, 28)
No.NameCountTypeFull Name
1ACO4Ligand/IonACETYL COENZYME *A
2MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 7)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 7)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:90 , LEU A:91 , VAL A:92 , ARG A:97 , ARG A:98 , ARG A:99 , GLY A:100 , ILE A:101 , GLY A:102 , ARG A:103 , ALA A:123 , GLY A:138 , PRO A:139 , PHE A:142 , ALA A:145 , HOH A:2101 , HOH A:2131 , HOH A:2280 , HOH A:2282 , HOH A:2283 , HOH A:2284 , HOH A:2285BINDING SITE FOR RESIDUE ACO A 401
2AC2SOFTWARELEU B:90 , LEU B:91 , VAL B:92 , ARG B:97 , ARG B:98 , ARG B:99 , GLY B:100 , ILE B:101 , GLY B:102 , ARG B:103 , GLY B:138 , PRO B:139 , PHE B:142 , ALA B:145 , HOH B:2272 , HOH B:2273 , HOH B:2274 , HOH B:2275 , HOH B:2276 , HOH B:2277BINDING SITE FOR RESIDUE ACO B 401
3AC3SOFTWARELEU C:90 , LEU C:91 , VAL C:92 , ARG C:97 , ARG C:98 , ARG C:99 , GLY C:100 , ILE C:101 , GLY C:102 , ARG C:103 , ALA C:123 , PRO C:139 , ALA C:141 , PHE C:142 , HOH C:2276 , HOH C:2277 , HOH C:2278 , HOH C:2279 , HOH C:2280 , HOH C:2281 , HOH C:2282 , HOH C:2283BINDING SITE FOR RESIDUE ACO C 401
4AC4SOFTWARELEU D:90 , LEU D:91 , VAL D:92 , ARG D:97 , ARG D:98 , ARG D:99 , GLY D:100 , ILE D:101 , GLY D:102 , ARG D:103 , GLY D:138 , PRO D:139 , ALA D:141 , PHE D:142 , ALA D:145 , HOH D:2306 , HOH D:2307 , HOH D:2308 , HOH D:2309BINDING SITE FOR RESIDUE ACO D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WPW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WPW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WPW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WPW)

(-) Exons   (0, 0)

(no "Exon" information available for 2WPW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
 aligned with Q8KRB5_STRCL | Q8KRB5 from UniProtKB/TrEMBL  Length:339

    Alignment length:336
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333      
         Q8KRB5_STRCL     4 TAGELEFVPLAANDDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAMGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQEVRTSYARQFETMRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPMIAVNAALGFEPYDRWVFWTAEAGPSD 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee..........hhhhhhhhhhhh.......hhhhhh.........eeeeeeeee........eeeeee....eeeeeee............hhhhhhhhhhhhhh...eeeeeeee...........hhhhhhhh..ee.......................................hhhhhhhhhhh..--------..hhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeeee...............hhhhh.....hhhhhhhhhhhhhhh.............hhhhhhhhhh...eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wpw A   4 TAGELEFVPLAANDDETVGQWLDLmALAAETGPRAAPPCNVDmVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAmGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELEL--------RAAQEVRTSYARQFETmRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPAYALQGmTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPmIAVNAALGFEPYDRWVFWTAEAGPSD 339
                                    13        23    |   33        43  |     53        63        73        83        93       103       113       123       133       143  |    153       163       173       183       193        |-       213       223   |   233       243       253       263    |  273       283       293       303       313       323       333      
                                                   28-MSE            46-MSE                                                                                             146-MSE                                                 202      211             227-MSE                                  268-MSE                                      313-MSE                      


Chain B from PDB  Type:PROTEIN  Length:326
 aligned with Q8KRB5_STRCL | Q8KRB5 from UniProtKB/TrEMBL  Length:339

    Alignment length:334
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335    
         Q8KRB5_STRCL     6 GELEFVPLAANDDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAMGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQEVRTSYARQFETMRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPMIAVNAALGFEPYDRWVFWTAEAGPSD 339
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..........hhhhhhhhhhhh.......hhhhhh.........eeeeeeeee........eeeeee....eeeeeee............hhhhhhhhhhhhhh...eeeeeeee...........hhhhhhhh..ee.......................................hhhhhhhhhhh..--------..hhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeeee...............hhhhh.....hhhhhhhhhhhhhhh.............hhhhhhhhhh...eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wpw B   6 GELEFVPLAANDDETVGQWLDLmALAAETGPRAAPPCNVDmVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAmGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELEL--------RAAQEVRTSYARQFETmRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPAYALQGmTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPmIAVNAALGFEPYDRWVFWTAEAGPSD 339
                                    15        25  |     35        45|       55        65        75        85        95       105       115       125       135       145|      155       165       175       185       195      |  -     | 215       225 |     235       245       255       265  |    275       285       295       305       315       325       335    
                                                 28-MSE            46-MSE                                                                                             146-MSE                                                 202      211             227-MSE                                  268-MSE                                      313-MSE                      


Chain C from PDB  Type:PROTEIN  Length:325
 aligned with Q8KRB5_STRCL | Q8KRB5 from UniProtKB/TrEMBL  Length:339

    Alignment length:333
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336   
         Q8KRB5_STRCL     7 ELEFVPLAANDDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAMGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQEVRTSYARQFETMRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPMIAVNAALGFEPYDRWVFWTAEAGPSD 339
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..........hhhhhhhhhhh........hhhhhh.........eeeeeeeee........eeeeee....eeeeeee............hhhhhhhhhhhhhh...eeeeeeee...........hhhhhhhh..ee.......................................hhhhhhhhhhh..--------..hhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeeee...............hhhhh.....hhhhhhhhhhhhhhh.............hhhhhhhhhh...eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wpw C   7 ELEFVPLAANDDETVGQWLDLmALAAETGPRAAPPCNVDmVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAmGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELEL--------RAAQEVRTSYARQFETmRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPAYALQGmTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPmIAVNAALGFEPYDRWVFWTAEAGPSD 339
                                    16        26 |      36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196     |   -    |  216       226|      236       246       256       266 |     276       286       296       306      |316       326       336   
                                                28-MSE            46-MSE                                                                                             146-MSE                                                 202      211             227-MSE                                  268-MSE                                      313-MSE                      


Chain D from PDB  Type:PROTEIN  Length:325
 aligned with Q8KRB5_STRCL | Q8KRB5 from UniProtKB/TrEMBL  Length:339

    Alignment length:333
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336   
         Q8KRB5_STRCL     7 ELEFVPLAANDDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAMGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQEVRTSYARQFETMRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPMIAVNAALGFEPYDRWVFWTAEAGPSD 339
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------Acetyltransf_1-2wpwD01 D:64-131                                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------Acetyltransf_1-2wpwD02 D:64-131                                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------Acetyltransf_1-2wpwD03 D:64-131                                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------Acetyltransf_1-2wpwD04 D:64-131                                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ..eeee..........hhhhhhhhhhhh.......hhhhhh.........eeeeeeeee........eeeeee....eeeeeee............hhhhhhhhhhhhhh...eeeeeeee...........hhhhhhhh..ee.......eeeee...........................hhhhhhhhhhh..--------..hhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeeee......eee......hhhhh.....hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh..eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wpw D   7 ELEFVPLAANDDETVGQWLDLmALAAETGPRAAPPCNVDmVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLVHPGRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAmGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELEL--------RAAQEVRTSYARQFETmRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPAYALQGmTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPmIAVNAALGFEPYDRWVFWTAEAGPSD 339
                                    16        26 |      36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196     |   -    |  216       226|      236       246       256       266 |     276       286       296       306      |316       326       336   
                                                28-MSE            46-MSE                                                                                             146-MSE                                                 202      211             227-MSE                                  268-MSE                                      313-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WPW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WPW)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Acetyltrans (109)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8KRB5_STRCL | Q8KRB5)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
biological process
    GO:0033050    clavulanic acid biosynthetic process    The chemical reactions and pathways resulting in the formation of clavulanic acid, (2R,3Z,5R)-3-(2-hydroxyethylidene)-7-oxo-4-oxa-1-azabicyclo[3.2.0]heptane-2-carboxylic acid.

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  2wpw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8KRB5_STRCL | Q8KRB5: 2wpx

(-) Related Entries Specified in the PDB File

2wpx TANDEM GNAT PROTEIN FROM THE CLAVULANIC ACID BIOSYNTHESIS PATHWAY (WITH ACCOA)