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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF RV3119 FROM MYCOBACTERIUM TUBERCULOSIS

Authors :   H. J. Cho, B. S. Kang

Date :   03 Aug 09 (Deposition) - 01 Sep 10 (Release) - 01 Sep 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.49

Chains :   Asym./Biol. Unit : A,B

Keywords :   Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. J. Cho, B. S. Kang
Crystal Structure Of Rv3119 From Mycobacterium Tuberculosis
To Be Published
PubMed: search

Molecule 1 - MOLYBDOPTERIN-CONVERTING FACTOR SUBUNIT 2 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET30A
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773
	Synonym	:	MOLYBDOPTERIN SYNTHASE SUBUNIT 2 1, MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN E 1, MOLYBDOPTERIN-CONVERTING FACTOR LARGE SUBUNIT 1, MPT SYNTHASE SUBUNIT 2 1

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 2)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	GOL	1	Ligand/Ion	GLYCEROL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:14 , THR A:16 , PRO A:19 , GLU A:24 , GLU B:59	BINDING SITE FOR RESIDUE GOL A1138
2	AC2	SOFTWARE	ASP A:17 , GLN A:18 , GLU B:59 , ILE B:130	BINDING SITE FOR RESIDUE CA B1137

(no "SS Bond" information available for 2WP4)

(no "Cis Peptide Bond" information available for 2WP4)

(no "SAP(SNP)/Variant" information available for 2WP4)

(no "PROSITE Motif" information available for 2WP4)

(no "Exon" information available for 2WP4)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:121
 aligned with MOAE1_MYCTO | P9WJR2 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:128
                                    19        29        39        49        59        69        79        89        99       109       119       129        
          MOAE1_MYCTO    10 YPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS 137
               SCOP domains d2wp4a_ A: automated matches                                                                                                     SCOP domains
               CATH domains 2wp4A00 A:10-137  [code=3.90.1170.40,        no name defined]                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhh.......eee......-------.eeeee.hhhhhhhhhhhhh.............eeee..........ee......hhhhhhhhhhhhhhhhhhhh..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wp4 A  10 YPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRD-------TRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS 137
                                    19        29        39      |  -    |   59        69        79        89        99       109       119       129        
                                                               46      54

Chain A from PDB  Type:PROTEIN  Length:121
 aligned with MOAE1_MYCTU | P9WJR3 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:128
                                    19        29        39        49        59        69        79        89        99       109       119       129        
          MOAE1_MYCTU    10 YPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS 137
               SCOP domains d2wp4a_ A: automated matches                                                                                                     SCOP domains
               CATH domains 2wp4A00 A:10-137  [code=3.90.1170.40,        no name defined]                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhh.......eee......-------.eeeee.hhhhhhhhhhhhh.............eeee..........ee......hhhhhhhhhhhhhhhhhhhh..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wp4 A  10 YPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRD-------TRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS 137
                                    19        29        39      |  -    |   59        69        79        89        99       109       119       129        
                                                               46      54

Chain B from PDB  Type:PROTEIN  Length:132
 aligned with MOAE1_MYCTO | P9WJR2 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
          MOAE1_MYCTO     2 ANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFS 136
               SCOP domains d2wp4b_ B: automated matches                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------MoaE-2wp4B01 B:12-128                                                                                                -------- Pfam domains (1)
           Pfam domains (2) ----------MoaE-2wp4B02 B:12-128                                                                                                -------- Pfam domains (2)
         Sec.struct. author .eeee......eeee....hhhhhhhhhh.......eee........---.eeeeee..hhhhhhhhhhhhh..hhhhh......eeee...ee.....ee......hhhhhhhhhhhhhhhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wp4 B   2 ANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHN---DVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFS 136
                                    11        21        31        41      |  -|       61        71        81        91       101       111       121       131     
                                                                         48  52

Chain B from PDB  Type:PROTEIN  Length:132
 aligned with MOAE1_MYCTU | P9WJR3 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
          MOAE1_MYCTU     2 ANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFS 136
               SCOP domains d2wp4b_ B: automated matches                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------MoaE-2wp4B01 B:12-128                                                                                                -------- Pfam domains (1)
           Pfam domains (2) ----------MoaE-2wp4B02 B:12-128                                                                                                -------- Pfam domains (2)
         Sec.struct. author .eeee......eeee....hhhhhhhhhh.......eee........---.eeeeee..hhhhhhhhhhhhh..hhhhh......eeee...ee.....ee......hhhhhhhhhhhhhhhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wp4 B   2 ANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHN---DVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFS 136
                                    11        21        31        41      |  -|       61        71        81        91       101       111       121       131     
                                                                         48  52

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: alpha/beta-Hammerhead (191)

Superfamily: Molybdopterin synthase subunit MoaE (10)

Family: automated matches (5)

Protein domain: automated matches (5)

Mycobacterium tuberculosis [TaxId: 1773] (1)

1a	d2wp4a_	A:
1b	d2wp4b_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Aldehyde Oxidoreductase; domain 3 (111)

Homologous Superfamily: [code=3.90.1170.40, no name defined] (6)

Mycobacterium tuberculosis. Organism_taxid: 1773. (1)

2wp4A00

A:10-137

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: MoaE] (7)

Family: MoaE (7)

Mycobacterium tuberculosis (1)

1a	MoaE-2wp4B01	B:12-128
1b	MoaE-2wp4B02	B:12-128

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (MOAE1_MYCTO | P9WJR2)

molecular function
	GO:0030366	molybdopterin synthase activity	Catalysis of the conversion of precursor Z to molybdopterin, the final step in molybdopterin biosynthesis.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.

Chain A,B (MOAE1_MYCTU | P9WJR3)

molecular function
	GO:0030366	molybdopterin synthase activity	Catalysis of the conversion of precursor Z to molybdopterin, the final step in molybdopterin biosynthesis.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 2wp4)

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Description

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Ligands, Modified Residues, Ions (2, 2)

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