Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4-OXOQUINALDINE 2,4-DIOXYGENASE (HOD) FROM ARTHROBACTER NITROGUAJACOLICUS RU61A IN COMPLEX WITH CHLORIDE
 
Authors :  R. A. Steiner
Date :  29 Jun 09  (Deposition) - 26 Jan 10  (Release) - 26 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, Alpha/Beta Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Steiner, H. J. Janssen, P. Roversi, A. J. Oakley, S. Fetzner
Structural Basis For Cofactor-Independent Dioxygenation Of N-Heteroaromatic Compounds At The {Alpha}/{Beta}-Hydrolase Fold.
Proc. Natl. Acad. Sci. Usa V. 107 657 2010
PubMed-ID: 20080731  |  Reference-DOI: 10.1073/PNAS.0909033107
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 1-H-3-HYDROXY-4-OXOQUINALDINE 2,4-DIOXYGENASE
    Chains: A, B, C, D
    EC Number: 1.13.11.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: M15/PREP4
    Expression System Taxid: 562
    Expression System Vector: PQE30
    Mutation: YES
    Organism Scientific: ARTHROBACTER NITROGUAJACOLICUS
    Organism Taxid: 211146
    Strain: RU61A

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 39)

Asymmetric Unit (5, 39)
No.NameCountTypeFull Name
1CL8Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3K4Ligand/IonPOTASSIUM ION
4NA12Ligand/IonSODIUM ION
5SRT7Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4NA-1Ligand/IonSODIUM ION
5SRT4Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4NA-1Ligand/IonSODIUM ION
5SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4NA-1Ligand/IonSODIUM ION
5SRT1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4NA-1Ligand/IonSODIUM ION
5SRT-1Ligand/IonS,R MESO-TARTARIC ACID

(-) Sites  (37, 37)

Asymmetric Unit (37, 37)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:174 , GLU C:267 , THR C:270BINDING SITE FOR RESIDUE GOL A1276
02AC2SOFTWAREHOH A:2042BINDING SITE FOR RESIDUE SRT A1277
03AC3SOFTWARESER A:232 , TYR A:243 , ASP D:158 , VAL D:159 , GOL D:1276BINDING SITE FOR RESIDUE GOL A1278
04AC4SOFTWARESER B:101 , HIS B:102 , LEU B:128 , PHE B:136 , TRP B:160BINDING SITE FOR RESIDUE GOL B1276
05AC5SOFTWAREALA B:235 , ASP C:162BINDING SITE FOR RESIDUE GOL C1275
06AC6SOFTWAREHIS C:102 , LEU C:128 , PHE C:136 , TRP C:160 , GLN C:221 , HIS C:251BINDING SITE FOR RESIDUE GOL C1276
07AC7SOFTWAREASP B:165 , HOH B:2039 , LYS D:245 , LEU D:246 , GLY D:247BINDING SITE FOR RESIDUE GOL B1277
08AC8SOFTWAREARG A:260 , VAL A:263 , LYS D:167 , ARG D:170 , HIS D:171BINDING SITE FOR RESIDUE GOL D1275
09AC9SOFTWAREARG A:216 , SER A:242 , TYR A:243 , GOL A:1278 , ASP D:158 , LEU D:161 , ASP D:162 , GLY D:163BINDING SITE FOR RESIDUE GOL D1276
10BC1SOFTWAREASP A:158 , ALA C:235 , HIS C:238 , PRO C:239 , PHE C:241BINDING SITE FOR RESIDUE K C1277
11BC2SOFTWAREALA A:235 , HIS A:238 , PRO A:239 , PHE A:241BINDING SITE FOR RESIDUE K A1279
12BC3SOFTWAREALA D:235 , HIS D:238 , PRO D:239 , PHE D:241BINDING SITE FOR RESIDUE K D1277
13BC4SOFTWAREALA B:235 , HIS B:238 , PRO B:239 , PHE B:241 , HOH C:2025BINDING SITE FOR RESIDUE K B1278
14BC5SOFTWAREMET D:177 , ALA D:178 , TYR D:180 , TRP D:185BINDING SITE FOR RESIDUE NA D1278
15BC6SOFTWARESER D:220 , GLY D:248 , THR D:250 , PRO D:253 , ASP D:256BINDING SITE FOR RESIDUE NA D1279
16BC7SOFTWARESER C:220 , THR C:250 , PRO C:253 , ASP C:256BINDING SITE FOR RESIDUE NA C1278
17BC8SOFTWAREMET C:177 , ALA C:178 , TYR C:180 , TRP C:185BINDING SITE FOR RESIDUE NA C1279
18BC9SOFTWAREHOH B:2019BINDING SITE FOR RESIDUE NA B1279
19CC1SOFTWAREGLU C:112 , GLY C:115 , ARG C:213BINDING SITE FOR RESIDUE NA C1280
20CC2SOFTWARELEU A:161 , HIS A:164 , ARG A:170 , HIS C:264BINDING SITE FOR RESIDUE NA A1280
21CC3SOFTWAREGLY A:247 , SRT A:1287BINDING SITE FOR RESIDUE NA D1300
22CC4SOFTWAREGLY C:247 , PRO C:249BINDING SITE FOR RESIDUE NA C1281
23CC5SOFTWAREGLY B:247 , SRT B:1284BINDING SITE FOR RESIDUE NA B1281
24CC6SOFTWAREGLY A:35 , TRP A:36 , SER A:101 , HIS A:102BINDING SITE FOR RESIDUE CL A1281
25CC7SOFTWAREGLY B:35 , TRP B:36BINDING SITE FOR RESIDUE CL B1282
26CC8SOFTWARESER C:101BINDING SITE FOR RESIDUE CL C1282
27CC9SOFTWARETRP D:36 , SER D:101BINDING SITE FOR RESIDUE CL D1280
28DC1SOFTWAREPHE A:136 , ILE A:192BINDING SITE FOR RESIDUE CL A1282
29DC2SOFTWARETRP A:130 , HOH A:2011BINDING SITE FOR RESIDUE CL A1283
30DC3SOFTWAREASP A:259 , ARG A:260BINDING SITE FOR RESIDUE CL D1302
31DC4SOFTWAREARG A:121 , HOH A:2018BINDING SITE FOR RESIDUE CL A1284
32DC5SOFTWARELYS A:167 , ARG A:170 , HIS A:171 , ARG C:260 , VAL C:263BINDING SITE FOR RESIDUE SRT A1285
33DC6SOFTWARELYS B:167 , ARG B:170 , HIS B:171 , ARG D:260 , VAL D:263BINDING SITE FOR RESIDUE SRT B1283
34DC7SOFTWAREARG B:260 , VAL B:263 , ARG C:170 , HOH C:2050BINDING SITE FOR RESIDUE SRT C1283
35DC8SOFTWAREHIS A:164 , ASP A:165 , HOH A:2044 , HOH A:2045 , HOH A:2046 , LYS C:245BINDING SITE FOR RESIDUE SRT A1286
36DC9SOFTWARELYS B:245 , LEU B:246 , NA B:1281 , HIS C:164 , ASP C:165 , GLU C:166BINDING SITE FOR RESIDUE SRT B1284
37EC1SOFTWARELYS A:245 , LEU A:246 , GLY A:247 , HOH A:2047 , HIS D:164 , ASP D:165 , GLU D:166 , NA D:1300BINDING SITE FOR RESIDUE SRT A1287

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:37 -A:184
2B:37 -B:184
3C:37 -C:184
4D:37 -D:184

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:27 -Pro A:28
2Gln A:221 -Pro A:222
3Gly B:27 -Pro B:28
4Gln B:221 -Pro B:222
5Gly C:27 -Pro C:28
6Gln C:221 -Pro C:222
7Gly D:27 -Pro D:28
8Gln D:221 -Pro D:222

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WM2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WM2)

(-) Exons   (0, 0)

(no "Exon" information available for 2WM2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
 aligned with HOD_PAENT | O31266 from UniProtKB/Swiss-Prot  Length:276

    Alignment length:274
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271    
            HOD_PAENT     2 TDTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPCEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIREFATAIRQG 275
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeee........eeeee.....hhhhhhhhhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wm2 A   2 TDTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIREFATAIRQG 275
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271    


Chain B from PDB  Type:PROTEIN  Length:275
 aligned with HOD_PAENT | O31266 from UniProtKB/Swiss-Prot  Length:276

    Alignment length:275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     
            HOD_PAENT     1 MTDTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPCEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIREFATAIRQG 275
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeee........eeeee.....hhhhhhhhhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wm2 B   1 MTDTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIREFATAIRQG 275
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270     


Chain C from PDB  Type:PROTEIN  Length:277
 aligned with HOD_PAENT | O31266 from UniProtKB/Swiss-Prot  Length:276

    Alignment length:277
                               1                                                                                                                                                                                                                                                                                 
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       
            HOD_PAENT     - ---MTDTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPCEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIREFATAIRQ 274
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh.eeeeee..eeeeeee........eeeee.....hhhhhhhhhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wm2 C  -2 HGSMTDTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIREFATAIRQ 274
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       


Chain D from PDB  Type:PROTEIN  Length:277
 aligned with HOD_PAENT | O31266 from UniProtKB/Swiss-Prot  Length:276

    Alignment length:277
                               1                                                                                                                                                                                                                                                                                 
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       
            HOD_PAENT     - ---MTDTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPCEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIREFATAIRQ 274
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee..eeeeeee........eeeee.....hhhhhhhhhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wm2 D  -2 HGSMTDTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIREFATAIRQ 274
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WM2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WM2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WM2)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (HOD_PAENT | O31266)
molecular function
    GO:0050586    3-hydroxy-2-methylquinolin-4-one 2,4-dioxygenase activity    Catalysis of the reaction: 3-hydroxy-2-methylquinolin-4(1H)-one + H(+) + O(2) = N-acetylanthranilate + CO.
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016702    oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
biological process
    GO:0019439    aromatic compound catabolic process    The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    K  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SRT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gln A:221 - Pro A:222   [ RasMol ]  
    Gln B:221 - Pro B:222   [ RasMol ]  
    Gln C:221 - Pro C:222   [ RasMol ]  
    Gln D:221 - Pro D:222   [ RasMol ]  
    Gly A:27 - Pro A:28   [ RasMol ]  
    Gly B:27 - Pro B:28   [ RasMol ]  
    Gly C:27 - Pro C:28   [ RasMol ]  
    Gly D:27 - Pro D:28   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2wm2
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  HOD_PAENT | O31266
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.13.11.48
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  HOD_PAENT | O31266
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HOD_PAENT | O31266: 2wj3 2wj4 2wj6 4cfs

(-) Related Entries Specified in the PDB File

2wj3 CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1- H-3-HYDROXY-4-OXOQUINALDINE 2,4- DIOXYGENASE (HOD) FROM ARTHROBACTER NITROGUAJACOLICUS RU61A
2wj4 CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1- H-3-HYDROXY-4-OXOQUINALDINE 2,4- DIOXYGENASE (HOD) FROM ARTHROBACTER NITROGUAJACOLICUS RU61A ANAEROBICALLY COMPLEXED WITH ITS NATURAL SUBSTRATE 1-H-3-HYDROXY- 4-OXOQUINALDINE
2wj6 CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1- H-3-HYDROXY-4-OXOQUINALDINE 2,4- DIOXYGENASE (HOD) FROM ARTHROBACTER NITROGUAJACOLICUS RU61A COMPLEXED WITH ITS NATURAL SUBSTRATE N-ACETYLANTHRANILATE