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(-) Description

Title :  HYPERTHERMOPHILIC ESTERASE FROM THE ARCHEON PYROBACULUM CALIDIFONTIS
 
Authors :  G. J. Palm, X. Bogdanovic, W. Hinrichs
Date :  02 Aug 11  (Deposition) - 17 Aug 11  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Hyperthermophilic Enzyme, Esterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. J. Palm, E. Fernandez-Alvaro, X. Bogdanovic, S. Bartsch, J. Sczodrok, R. K. Singh, D. Boettcher, H. Atomi, U. T. Bornscheuer, W. Hinrichs
The Crystal Structure Of An Esterase From The Hyperthermophilic Microorganism Pyrobaculum Calidifontis Va1 Supports Explanation Of Its Enantioselectivity.
Appl. Microbiol. Biotechnol. V. 91 1061 2011
PubMed-ID: 21614503  |  Reference-DOI: 10.1007/S00253-011-3337-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALPHA/BETA HYDROLASE FOLD-3 DOMAIN PROTEIN
    Chains: A, B
    EC Number: 3.1.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: ROSETTA
    Expression System Vector: PET21A
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROBACULUM CALIDIFONTIS
    Organism Taxid: 410359
    Strain: VA1
    Synonym: PESTE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3ZWQ)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1ASAAUTHORSER A:157 , HIS A:284 , ASP A:254 , ALA A:158 , GLY A:85 , GLY A:86ACTIVE SITE MONOMER A WITH CATALYTIC TRIAD (SER 157, HIS 284, ASP 254) AND OXYANION HOLE (ALA 158, GLY 85, GLY 86)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZWQ)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:118 -Pro A:119
2Phe A:123 -Pro A:124
3Ala B:118 -Pro B:119
4Phe B:123 -Pro B:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZWQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZWQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZWQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
 aligned with A3MVR4_PYRCJ | A3MVR4 from UniProtKB/TrEMBL  Length:313

    Alignment length:313
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310   
         A3MVR4_PYRCJ     1 MPLSPILRQILQQLAAQLQFRPDMDVKTVREQFEKSSLILVKMANEPIHRVEDITIPGRGGPIRARVYRPRDGERLPAVVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRLAPEHKFPAAVEDAYDAAKWVADNYDKLGVDNGKIAVAGDSAGGNLAAVTAIMARDRGESFVKYQVLIYPAVNLTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFADLSNLPPALVITAEYDPLRDEGELYAHLLKTRGVRAVAVRYNGVIHGFVNFYPILEEGREAVSQIAASIKSMAVA 313
               SCOP domains d3zwqa_ A: automated matches                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeeeee......eeeeeee.........hhhhhhhhhhhhhhhh.eeeeee.........hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeehhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhh.hhhhh..hhhhhhhhhhhhh.hhhhhhh...hhhhh.......eeeeeeee..hhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhh..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zwq A   1 MPLSPILRQILQQLAAQLQFRPDMDVKTVREQFEKSSLILVKMANEPIHRVEDITIPGRGGPIRARVYRPRDGERLPAVVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRLAPEHKFPAAVEDAYDAAKWVADNYDKLGVDNGKIAVAGDSAGGNLAAVTAIMARDRGESFVKYQVLIYPAVNLTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFADLSNLPPALVITAEYDPLRDEGELYAHLLKTRGVRAVAVRYNGVIHGFVNFYPILEEGREAVSQIAASIKSMAVA 313
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310   


Chain B from PDB  Type:PROTEIN  Length:305
 aligned with A3MVR4_PYRCJ | A3MVR4 from UniProtKB/TrEMBL  Length:313

    Alignment length:313
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310   
         A3MVR4_PYRCJ     1 MPLSPILRQILQQLAAQLQFRPDMDVKTVREQFEKSSLILVKMANEPIHRVEDITIPGRGGPIRARVYRPRDGERLPAVVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRLAPEHKFPAAVEDAYDAAKWVADNYDKLGVDNGKIAVAGDSAGGNLAAVTAIMARDRGESFVKYQVLIYPAVNLTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFADLSNLPPALVITAEYDPLRDEGELYAHLLKTRGVRAVAVRYNGVIHGFVNFYPILEEGREAVSQIAASIKSMAVA 313
               SCOP domains d3zwqb_ B: aut        omated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh--------..hhhhhhhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeeeee......eeeeeee............hhhhhhhhhhhhh.eeeeee.........hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeehhhhhhhhhhhhhhhhh......eeeee..........hhhhhhh.hhhhh..hhhhhhhhhhhhh.hhhhhhh...hhhhh.......eeeeeeee..hhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhh..hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zwq B   1 MPLSPILRQILQQL--------DMDVKTVREQFEKSSLILVKMANEPIHRVEDITIPGRGGPIRARVYRPRDGERLPAVVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRLAPEHKFPAAVEDAYDAAKWVADNYDKLGVDNGKIAVAGDSAGGNLAAVTAIMARDRGESFVKYQVLIYPAVNLTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFADLSNLPPALVITAEYDPLRDEGELYAHLLKTRGVRAVAVRYNGVIHGFVNFYPILEEGREAVSQIAASIKSMAVA 313
                                    10   |     -  |     30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310   
                                        14       23
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0 ; only for superseded entry 2WIR: 1,2)

(no "CATH Domain" information available for 3ZWQ, only for superseded entry 2WIR replaced by 3ZWQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZWQ)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (A3MVR4_PYRCJ | A3MVR4)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  Cis Peptide Bonds
    Ala A:118 - Pro A:119   [ RasMol ]  
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