Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  PULLULANASE FROM BACILLUS ACIDOPULLULYTICUS
 
Authors :  J. P. Turkenburg, A. M. Brzozowski, A. Svendsen, T. V. Borchert, G. J. Davies, K. S. Wilson
Date :  10 Feb 09  (Deposition) - 05 May 09  (Release) - 13 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Glycoside Hydrolase, Polysaccharide, Amylase, Starch, Carbohydrate (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. P. Turkenburg, A. M. Brzozowski, A. Svendsen, T. V. Borchert, G. J. Davies, K. S. Wilson
Structure Of A Pullulanase From Bacillus Acidopullulyticus.
Proteins V. 76 516 2009
PubMed-ID: 19382205  |  Reference-DOI: 10.1002/PROT.22416

(-) Compounds

Molecule 1 - PULLULANASE
    ChainsA
    EC Number3.2.1.41
    EngineeredYES
    Expression SystemBACILLUS SUBTILIS
    Expression System Taxid1423
    Organism ScientificBACILLUS ACIDOPULLULYTICUS
    Organism Taxid28030
    Other DetailsA588 CYS MODELLED AS OXIDISED CYSTEINE (CSX)

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric/Biological Unit (4, 17)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CSX1Mod. Amino AcidS-OXY CYSTEINE
3GOL8Ligand/IonGLYCEROL
4SO44Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:684 , ASP A:688 , VAL A:691 , VAL A:732 , ASN A:737 , MET A:738 , HOH A:2951 , HOH A:2952 , HOH A:2953BINDING SITE FOR RESIDUE GOL A1922
02AC2SOFTWAREARG A:303 , ASN A:304 , TYR A:574 , ARG A:575 , THR A:576 , GLU A:595 , HIS A:596 , HOH A:2954 , HOH A:2955 , HOH A:2956 , HOH A:2957BINDING SITE FOR RESIDUE GOL A1923
03AC3SOFTWARELYS A:758 , GLU A:761 , LEU A:762 , GLY A:894 , ASP A:895 , ILE A:914 , SER A:915 , HOH A:2958 , HOH A:2959 , HOH A:2960BINDING SITE FOR RESIDUE GOL A1924
04AC4SOFTWARELYS A:479 , GLN A:544 , ARG A:545 , SER A:878 , HOH A:2961 , HOH A:2962BINDING SITE FOR RESIDUE GOL A1925
05AC5SOFTWAREGLY A:796 , ASP A:797 , SER A:798 , HOH A:2796 , HOH A:2963 , HOH A:2964BINDING SITE FOR RESIDUE GOL A1926
06AC6SOFTWAREGLY A:418 , GLY A:421 , ASP A:422 , GLN A:539 , GLN A:543 , ASN A:908 , VAL A:909 , HOH A:2392BINDING SITE FOR RESIDUE GOL A1927
07AC7SOFTWARESER A:901 , HIS A:904 , GOL A:1929 , HOH A:2965BINDING SITE FOR RESIDUE GOL A1928
08AC8SOFTWAREGLU A:899 , LYS A:900 , SER A:901 , LYS A:920 , GOL A:1928 , HOH A:2966BINDING SITE FOR RESIDUE GOL A1929
09AC9SOFTWAREARG A:831 , HOH A:2819 , HOH A:2967 , HOH A:2968BINDING SITE FOR RESIDUE SO4 A1930
10BC1SOFTWARETRP A:376 , ALA A:417 , GLY A:418 , TRP A:419 , GLN A:420 , HOH A:2310 , HOH A:2314 , HOH A:2385 , HOH A:2936 , HOH A:2969 , HOH A:2971BINDING SITE FOR RESIDUE SO4 A1931
11BC2SOFTWAREGLN A:837 , GLN A:840 , ASN A:841 , ASN A:861 , HIS A:862 , HOH A:2874 , HOH A:2972 , HOH A:2973BINDING SITE FOR RESIDUE SO4 A1932
12BC3SOFTWAREVAL A:707 , THR A:849 , ASN A:850 , HOH A:2685 , HOH A:2974 , HOH A:2975BINDING SITE FOR RESIDUE SO4 A1933
13BC4SOFTWARELYS A:711 , ILE A:715 , PHE A:844 , HOH A:2696 , HOH A:2698BINDING SITE FOR RESIDUE ACT A1934
14BC5SOFTWARETHR A:594 , GLU A:595 , LEU A:627 , GLY A:628 , ASP A:630 , THR A:631 , GLN A:664BINDING SITE FOR RESIDUE ACT A1935
15BC6SOFTWARELEU A:379 , ARG A:405 , HOH A:2976BINDING SITE FOR RESIDUE ACT A1936
16BC7SOFTWARELYS A:672 , THR A:722 , SER A:723 , HOH A:2977BINDING SITE FOR RESIDUE ACT A1937
17CATAUTHORASP A:622 , GLU A:651 , ASP A:736NUCLEOPHILE, ACID-BASE, TRANSITION STATE STABILISER.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WAN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:224 -Pro A:225

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WAN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WAN)

(-) Exons   (0, 0)

(no "Exon" information available for 2WAN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:810
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeeeeeee.......eeeee.....ee.eeeeee.....eeeee..hhhhh........hhhh..eeee..eeeeeeee..eeeeeeeee......eeeeeeeeeee....eeeeeeee....eeee................eeeeeeeee.........eeeee..eeeee.ee.hhhhhhhhh......eeee...eeeeeee.....eeeeeee........eeee.ee....eeeeeee......eeeeeee....eeee........hhhhh.ee..hhhhhh..hhhhh......hhhhh.eeeehhhhhhh..........hhhhhhh....hhhhh.hhhhhhhhhh..eeee...eee................eeeeeee.hhhh.....hhhhhhhhhhhhhhhhh..eeeeee..........hhhhhhh..........................hhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..........................eeehhhhhhhhhh................hhhhhhhhhh........hhh.eee........hhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..eeeee.hhhhh............hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheee.......eeeee..hhhhh....eeeeee.....eeee.....eeeeee..ee......ee..eeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wan A 112 PSVSNAYLDDEKTVLAKLSMPMTLADAASGFTVIDKTTGEKIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKINPNLYQLSGTLPAGTYQYKIALDHSWNTSYPGNNVSLTVPEGGEKVTFTYIPSTNQVFDSVNHPNQAFPTSSAGVQTNLVQLTLASAPDVTHNLDVAADGYKAHNILPRNVLNLPRYDYSGNDLGNVYSKDATSFRVWAPTASNVQLLLYNSEKGSITKQLEMQKSDNGTWKLQVSGNLENWYYLYQVTVNGTTQTAVDPYARAISVNATRGMIVDLKATDPAGWQGDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDVMVSDFDKIVPQYYYRTDSNGNYTNGSGcGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNELHAINPGIVLYGEPWTGGTSGLSSDQLVTKGQQKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGVIGSIQDFTSAPSETINYVTSHDNMTLWDKILASNPSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGNDNSYNAGDSVNQFDWSRKAQFKDVFDYFSSMIHLRNQHPAFRMTTADQIKQNLTFLESPTNTVAFELKNYANHDTWKNIIVMYNPNKTSQTLNLPSGDWTIVGLGDQIGEKSLGHVMGNVQVPAISTLILKQ 921
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581      |591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      588-CSX                                                                                                                                                                                                                                                                                                                                         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WAN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WAN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WAN)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WAN)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CSX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    CAT  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Tyr A:224 - Pro A:225   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2wan
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  3.2.1.41
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2WAN)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2WAN)