2W8D - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   DISTINCT AND ESSENTIAL MORPHOGENIC FUNCTIONS FOR WALL- AND LIPO-TEICHOIC ACIDS IN BACILLUS SUBTILIS

Authors :   K. Schirner, J. Marles-Wright, R. J. Lewis, J. Errington

Date :   15 Jan 09 (Deposition) - 03 Mar 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.35

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Transferase, Phosphatase, Cell Membrane, Transmembrane, Lta, Wta, Membrane, Secreted, Cell Wall, B. Subtilis, Lipotechoic Acid, Cell Wall Biogenesis/Degradation Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Schirner, J. Marles-Wright, R. J. Lewis, J. Errington
Distinct And Essential Morphogenic Functions For Wall- And Lipo-Teichoic Acids In Bacillus Subtilis
Embo J. V. 28 830 2009
PubMed-ID: 19229300 | Reference-DOI: 10.1038/EMBOJ.2009.25

Molecule 1 - PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE 2
	Atcc	:	6051
	Chains	:	A, B
	EC Number	:	2.7.8.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL DOMAIN, RESIDUES 214-649
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423
	Strain	:	168
	Synonym	:	LTAS, LTA SYNTHASE 2, POLYGLYCEROL PHOSPHATE SYNTHASE 2

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 30)

No.	Name	Count	Type	Full Name
1	MG	2	Ligand/Ion	MAGNESIUM ION
2	MSE	24	Mod. Amino Acid	SELENOMETHIONINE
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
5	TPO	2	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 1 (4, 15)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
5	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 2 (2, 13)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PG4	-1	Ligand/Ion	TETRAETHYLENE GLYCOL
5	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:253 , TPO A:297 , ASP A:471 , HIS A:472	BINDING SITE FOR RESIDUE MG A1636
2	AC2	SOFTWARE	GLU B:253 , TPO B:297 , ASP B:471 , HIS B:472	BINDING SITE FOR RESIDUE MG B1636
3	AC3	SOFTWARE	LYS A:363 , SER A:397	BINDING SITE FOR RESIDUE PG4 A1637
4	AC4	SOFTWARE	LEU A:311 , ALA A:312 , GLN A:313 , ASP A:606 , ILE A:609 , ASN A:610 , HOH A:2134	BINDING SITE FOR RESIDUE PEG A1638

(no "SS Bond" information available for 2W8D)

Asymmetric Unit

No.	Residues
1	Gln A:400	-	Pro A:401
2	Phe A:413	-	Pro A:414
3	Glu A:419	-	Gly A:420
4	Gln B:400	-	Pro B:401
5	Phe B:413	-	Pro B:414
6	Gly B:416	-	Mse B:417

(no "SAP(SNP)/Variant" information available for 2W8D)

(no "PROSITE Motif" information available for 2W8D)

(no "Exon" information available for 2W8D)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:420
 aligned with LTAS2_BACSU | O34952 from UniProtKB/Swiss-Prot  Length:649

    Alignment length:420
                                   225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635
          LTAS2_BACSU   216 DSSDVTEVENYMKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKLAHDNETFYFDNFFHQTGQGKTSDAEFMMENSLYPLAQGSVFVNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWNRNEMYKAEGIDKFFDSAYYDMNEENTKNYGMKDKPFFKESMPLLESLPQPFYTKFITLSNHFPFGMDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLMSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEMSDKIINGDLLRFYEPKGFKKVNPSDYDYTKH 635
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..............eeeeeee...hhhhh..ee..ee.hhhhhhhhhh...eee..ee.....hhhhhhhhhhhhh.......hhhhhh......hhhhhhhhhh.eeeeee....hhhhhhhhhhhh...eeehhhhh..hhhh......hhhhhhhhhhhhhhh....eeeeee.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee.....hhhhhhhhhhhh.....hhhhhhhh....eeeee......ee...ee..hhhhhhhhhh......................ee.....ee...eeee..eeee.....eehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2w8d A 216 DSSDVTEVENYmKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKLAHDNETFYFDNFFHQTGQGKtSDAEFmmENSLYPLAQGSVFVNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWNRNEmYKAEGIDKFFDSAYYDmNEENTKNYGmKDKPFFKESmPLLESLPQPFYTKFITLSNHFPFGmDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVmYGDHYGISENHNKAmAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLmSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEmSDKIINGDLLRFYEPKGFKKVNPSDYDYTKH 635
                                   225 |     235       245       255       265       275       285       295 |     305       315       325       335       345       355       365      |375      |385      |395       405       415 |     425       435       445       455       465  |    475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635
                                     227-MSE                                                               297-TPO ||                                                355-MSE          372-MSE   382-MSE   392-MSE                  417-MSE                                            468-MSE        483-MSE                                                     543-MSE                                                      604-MSE                           
                                                                                                                 303-MSE                                                                                                                                                                                                                                                                                                                                        
                                                                                                                  304-MSE

Chain B from PDB  Type:PROTEIN  Length:421
 aligned with LTAS2_BACSU | O34952 from UniProtKB/Swiss-Prot  Length:649

    Alignment length:421
                                   224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634 
          LTAS2_BACSU   215 ADSSDVTEVENYMKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKLAHDNETFYFDNFFHQTGQGKTSDAEFMMENSLYPLAQGSVFVNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWNRNEMYKAEGIDKFFDSAYYDMNEENTKNYGMKDKPFFKESMPLLESLPQPFYTKFITLSNHFPFGMDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLMSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEMSDKIINGDLLRFYEPKGFKKVNPSDYDYTKH 635
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------Sulfatase-2w8dB01 B:245-635                                                                                                                                                                                                                                                                                                                                                                             Pfam domains (1)
           Pfam domains (2) ------------------------------Sulfatase-2w8dB02 B:245-635                                                                                                                                                                                                                                                                                                                                                                             Pfam domains (2)
         Sec.struct. author .hhhhhhhhhhhhhhh...............eeeeeee...hhhhh..ee..ee.hhhhhhhhhh...eee..ee.....hhhhhhhhhhhhh.......hhhhhh......hhhhhhhhhh.eeeeee....hhhhhhhhhhhhh..eeehhhhh............hhhhhhhhhhhhhhh....eeeeee.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.....hhhhhhhhhhhh.....hhhhhhhh....eeeee......ee...ee..hhhhhhhhhh......................ee.....ee...eeee..eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w8d B 215 ADSSDVTEVENYmKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKLAHDNETFYFDNFFHQTGQGKtSDAEFmmENSLYPLAQGSVFVNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWNRNEmYKAEGIDKFFDSAYYDmNEENTKNYGmKDKPFFKESmPLLESLPQPFYTKFITLSNHFPFGmDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVmYGDHYGISENHNKAmAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLmSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEmSDKIINGDLLRFYEPKGFKKVNPSDYDYTKH 635
                                   224  |    234       244       254       264       274       284       294  |    304       314       324       334       344       354|      364       374       384       394       404       414  |    424       434       444       454       464   |   474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634 
                                      227-MSE                                                               297-TPO ||                                                355-MSE          372-MSE   382-MSE   392-MSE                  417-MSE                                            468-MSE        483-MSE                                                     543-MSE                                                      604-MSE                           
                                                                                                                  303-MSE                                                                                                                                                                                                                                                                                                                                        
                                                                                                                   304-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2W8D)

(no "CATH Domain" information available for 2W8D)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Alk_phosphatase (47)

Family: Sulfatase (9)

Bacillus subtilis (1)

1a	Sulfatase-2w8dB01	B:245-635
1b	Sulfatase-2w8dB02	B:245-635

Asymmetric Unit(hide GO term definitions)

Chain A,B (LTAS2_BACSU | O34952)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008484	sulfuric ester hydrolase activity	Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0070395	lipoteichoic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of lipoteichoic acid, which is a major component of the cell wall of gram-positive bacteria and typically consists of a chain of glycerol-phosphate repeating units linked to a glycolipid anchor.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	Cis Peptide Bonds
		Gln A:400 - Pro A:401	[ RasMol ]
		Gln B:400 - Pro B:401	[ RasMol ]
		Glu A:419 - Gly A:420	[ RasMol ]
		Gly B:416 - Mse B:417	[ RasMol ]
		Phe A:413 - Pro A:414	[ RasMol ]
		Phe B:413 - Pro B:414	[ RasMol ]

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	2w8d
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	2.7.8.-
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 30)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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