2W7R - JenaLib

Title :   STRUCTURE OF THE PDZ DOMAIN OF HUMAN MICROTUBULE ASSOCIATED SERINE-THREONINE KINASE 4

Authors :   J. R. C. Muniz, J. Elkins, J. Wang, P. Savitzky, A. Roos, E. Salah, F. Von C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, S. Knapp

Date :   24 Dec 08 (Deposition) - 12 May 09 (Release) - 28 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A,B

Keywords :   Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. M. Elkins, C. Gileadi, L. Shrestha, C. Phillips, J. Wang, J. R. C. Muniz, D. A. Doyle
Unusual Binding Interactions In Pdz Domain Crystal Structures Help Explain Binding Mechanisms.
Protein Sci. V. 19 731 2010
PubMed-ID: 20120020 | Reference-DOI: 10.1002/PRO.349

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:95
 aligned with MAST4_HUMAN | O15021 from UniProtKB/Swiss-Prot  Length:2626

    Alignment length:96
                                  1152      1162      1172      1182      1192      1202      1212      1222      1232      
         MAST4_HUMAN   1143 QPIVIHSSGKNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSITTTPFENTSIKT 1238
               SCOP domains d2w7ra_  A: automated matches                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..-....eeeeeeeee......eeeeeeeeee...hhhhhhh.....eeeee..ee....hhhhhhhhhhh...eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -PDZ  PDB: A:4-92 UniProt: 1144-1232                                                      ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                2w7r A    3 QPIVIHSS-KNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSITTTPFENTETSV   98
                                   |12        22        32        42        52        62        72        82        92      
                                  10 |                                                                                      
                                    12

Chain B from PDB  Type:PROTEIN  Length:95
 aligned with MAST4_HUMAN | O15021 from UniProtKB/Swiss-Prot  Length:2626

    Alignment length:96
                                  1152      1162      1172      1182      1192      1202      1212      1222      1232      
         MAST4_HUMAN   1143 QPIVIHSSGKNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSITTTPFENTSIKT 1238
               SCOP domains d2w7rb_  B: automated matches                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -PDZ-2w7 rB01 B:4-89                                                                   --------- Pfam domains (1)
           Pfam domains (2) -PDZ-2w7 rB02 B:4-89                                                                   --------- Pfam domains (2)
         Sec.struct. author ..eeee..-....eeeeeeeee......eeeeeeeeee...hhhhhhh.....eeeee..ee....hhhhhhhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -PDZ  PDB: B:4-92 UniProt: 1144-1232                                                      ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                2w7r B    3 QPIVIHSS-KNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSITTTPFENTETSV   98
                                   |12        22        32        42        52        62        72        82        92      
                                  10 |                                                                                      
                                    12

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (MAST4_HUMAN | O15021)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0007010	cytoskeleton organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
	GO:0035556	intracellular signal transduction	The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
	GO:0018105	peptidyl-serine phosphorylation	The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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