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(-) Description

Title :  NOVEL RNA-BINDING DOMAIN IN CRYPTOSPORIDIUM PARVUM AT 2.5 ANGSTROM RESOLUTION
 
Authors :  A. Varrot, C. Mackereth, A. Mourao, M. Sattler, S. Cusack
Date :  02 Dec 08  (Deposition) - 29 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Rna Transport, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Mourao, A. Varrot, C. Mackereth, S. Cusack, M. Sattler
Structure And Rna Recognition By The Snrna And Snorna Transport Factor Phax.
Rna V. 16 1205 2010
PubMed-ID: 20430857  |  Reference-DOI: 10.1261/RNA.2009910

(-) Compounds

Molecule 1 - ANKYRIN-REPEAT PROTEIN
    Atcc: PRA-67D
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PROEXHTB
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: ORIGAMI
    Fragment: RNA-BINDING DOMAIN, RESIDUES 387-496
    Organism Scientific: CRYPTOSPORIDIUM PARVUM
    Organism Taxid: 414452
    Strain: IOWA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):   CD
Biological Unit 2 (1x): AB  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2W4S)

(-) Sites  (0, 0)

(no "Site" information available for 2W4S)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2W4S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2W4S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2W4S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2W4S)

(-) Exons   (0, 0)

(no "Exon" information available for 2W4S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:86
 aligned with Q7YZ62_CRYPV | Q7YZ62 from UniProtKB/TrEMBL  Length:496

    Alignment length:89
                                   396       406       416       426       436       446       456       466         
         Q7YZ62_CRYPV   387 DTMESIVLNTIVTGLQEPKKEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQ 475
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.---.hhhhhhhhhh.hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2w4s A 387 DTMESIVLNTIVTGLQ---KEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQ 475
                                   396     | 406       416       426       436       446       456       466         
                                         402 406                                                                     


Chain B from PDB  Type:PROTEIN  Length:85
 aligned with Q7YZ62_CRYPV | Q7YZ62 from UniProtKB/TrEMBL  Length:496

    Alignment length:88
                                   397       407       417       427       437       447       457       467        
         Q7YZ62_CRYPV   388 TMESIVLNTIVTGLQEPKKEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQ 475
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.---.hhhhhhhhhh.hhhhhhhhhhhhhhhhh..eee..eeee..hhhhhhhhhhhhhhh....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 2w4s B 388 TMESIVLNTIVTGLQ---KEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQ 475
                                   397    |  407       417       427       437       447       457       467        
                                        402 406                                                                     


Chain C from PDB  Type:PROTEIN  Length:86
 aligned with Q7YZ62_CRYPV | Q7YZ62 from UniProtKB/TrEMBL  Length:496

    Alignment length:89
                                   396       406       416       426       436       446       456       466         
         Q7YZ62_CRYPV   387 DTMESIVLNTIVTGLQEPKKEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQ 475
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.---.hhhhhhhhhh.hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2w4s C 387 DTMESIVLNTIVTGLQ---KEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQ 475
                                   396     | 406       416       426       436       446       456       466         
                                         402 406                                                                     


Chain D from PDB  Type:PROTEIN  Length:86
 aligned with Q7YZ62_CRYPV | Q7YZ62 from UniProtKB/TrEMBL  Length:496

    Alignment length:89
                                   396       406       416       426       436       446       456       466         
         Q7YZ62_CRYPV   387 DTMESIVLNTIVTGLQEPKKEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQ 475
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----RNA_GG_bind   -2w4sD01 D:392-475                                                     Pfam domains (1)
           Pfam domains (2) -----RNA_GG_bind   -2w4sD02 D:392-475                                                     Pfam domains (2)
           Pfam domains (3) -----RNA_GG_bind   -2w4sD03 D:392-475                                                     Pfam domains (3)
           Pfam domains (4) -----RNA_GG_bind   -2w4sD04 D:392-475                                                     Pfam domains (4)
         Sec.struct. author ..hhhhhhhhhhhhh.---.hhhhhhhhhh.hhhhhhhhhhhhhhhhh..eee..eeee..hhhhhhhhhhhhhhh....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2w4s D 387 DTMESIVLNTIVTGLQ---KEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFCYLLKQLVAEDQITIQEWNYIRQ 475
                                   396     | 406       416       426       436       446       456       466         
                                         402 406
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2W4S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2W4S)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: RNA_GG_bind] (2)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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