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(-) Description

Title :  STRUCTURE OF AN N-TERMINALLY TRUNCATED NUDIX HYDROLASE DR2204 FROM DEINOCOCCUS RADIODURANS
 
Authors :  A. M. D. Goncalves, E. Fioravanti, M. Stelter, S. Mcsweeney
Date :  25 Nov 08  (Deposition) - 01 Dec 09  (Release) - 01 Dec 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Adp-Ribose Pyrophosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. D. Goncalves, E. Fioravanti, M. Stelter, S. Mcsweeney
Structure Of An N-Terminally Truncated Nudix Hydrolase Dr2204 From Deinococcus Radiodurans.
Acta Crystallogr. , Sect. F V. 65 1083 2009
PubMed-ID: 19923723  |  Reference-DOI: 10.1107/S1744309109037191

(-) Compounds

Molecule 1 - MUTT/NUDIX FAMILY PROTEIN
    Chains: A, B
    EC Number: 3.6.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET151-D/TOPO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: RESIDUES 56-200
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 243230
    Strain: R1
    Synonym: ADP-RIBOSE PYROPHOSPHATASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2W4E)

(-) Sites  (0, 0)

(no "Site" information available for 2W4E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2W4E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2W4E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2W4E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2W4E)

(-) Exons   (0, 0)

(no "Exon" information available for 2W4E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
 aligned with Q9RSC1_DEIRA | Q9RSC1 from UniProtKB/TrEMBL  Length:200

    Alignment length:145
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195     
         Q9RSC1_DEIRA    56 RPRGPRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAGEIQDGPSSLTLWQARGELTRRGLL 200
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee...eeeeeeee......eeee.eeee.....hhhhhhhhhhhhhhhee..eeee.............eeeeeeeeeeee.--------.eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w4e A  56 RPRGPRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFYPLLALGVTLG--------TIERVVLPLAEVYRMLEAGEIQDGPSSLTLWQARGELTRRGLL 200
                                    65        75        85        95       105       115       125       135       145   |     -  |    165       175       185       195     
                                                                                                                       149      158                                          


Chain B from PDB  Type:PROTEIN  Length:131
 aligned with Q9RSC1_DEIRA | Q9RSC1 from UniProtKB/TrEMBL  Length:200

    Alignment length:141
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199 
         Q9RSC1_DEIRA    60 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAGEIQDGPSSLTLWQARGELTRRGLL 200
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) NUDIX-2w4eB01 B:60-189                                                                                                            ----------- Pfam domains (1)
           Pfam domains (2) NUDIX-2w4eB02 B:60-189                                                                                                            ----------- Pfam domains (2)
         Sec.struct. author .eeeeeee.....eeeeeeeeehhhheeeee.eeee.....hhhhhhhhhhhhhhh....eeee.............eeeeeeee....----------.eeeeeehhhhhhhhhhh...hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w4e B  60 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFYPLLALGVTL----------IERVVLPLAEVYRMLEAGEIQDGPSSLTLWQARGELTRRGLL 200
                                    69        79        89        99       109       119       129       139        |-       159       169       179       189       199 
                                                                                                                  148        159
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2W4E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2W4E)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: NUDIX (85)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q9RSC1_DEIRA | Q9RSC1)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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