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(-) Description

Title :  CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM GLYCEROL KINASE WITH BOUND GLYCEROL
 
Authors :  C. Schnick, S. D. Polley, Q. L. Fivelman, L. Ranford-Cartwright, S. R. Wilkinson, J. A. Brannigan, A. J. Wilkinson, D. A. Baker
Date :  18 Nov 08  (Deposition) - 02 Dec 08  (Release) - 03 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Closed Conformation, Kinase, Malaria, Plasmodium, Transferase, Sugar Kinase/Hsp70/Actin Superfamily, Glycerol Kinase, Open Conformation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Schnick, S. D. Polley, Q. L. Fivelman, L. Ranford-Cartwright, S. R. Wilkinson, J. A. Brannigan, A. J. Wilkinson, D. A. Baker
Structure And Non-Essential Function Of Glycerol Kinase In Plasmodium Falciparum Blood Stages.
Mol. Microbiol. V. 71 533 2009
PubMed-ID: 19040641  |  Reference-DOI: 10.1111/J.1365-2958.2008.06544.X

(-) Compounds

Molecule 1 - GLYCEROL KINASE, PUTATIVE
    Chains: A, B, C, D
    EC Number: 2.7.1.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL-C2X
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: 3D7

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 74)

Asymmetric Unit (2, 74)
No.NameCountTypeFull Name
1EDO62Ligand/Ion1,2-ETHANEDIOL
2GOL12Ligand/IonGLYCEROL
Biological Unit 1 (2, 37)
No.NameCountTypeFull Name
1EDO28Ligand/Ion1,2-ETHANEDIOL
2GOL9Ligand/IonGLYCEROL
Biological Unit 2 (2, 37)
No.NameCountTypeFull Name
1EDO34Ligand/Ion1,2-ETHANEDIOL
2GOL3Ligand/IonGLYCEROL

(-) Sites  (74, 74)

Asymmetric Unit (74, 74)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR B:293 , LYS B:294 , PHE B:295 , ASP B:299 , LYS B:300 , LYS B:302BINDING SITE FOR RESIDUE EDO B1502
02AC2SOFTWAREVAL B:182 , ILE B:217 , LYS B:218 , SER B:219 , LYS B:294 , ASP B:297 , HOH B:2232 , HOH B:2471BINDING SITE FOR RESIDUE EDO B1503
03AC3SOFTWAREVAL A:182 , LEU A:196 , ILE A:217 , LYS A:218 , SER A:219 , LYS A:294 , ASP A:297 , HOH A:2216BINDING SITE FOR RESIDUE EDO A1502
04AC4SOFTWAREVAL C:182 , ILE C:217 , LYS C:218 , SER C:219 , LYS C:294 , ASP C:297 , HOH C:2236 , HOH C:2471BINDING SITE FOR RESIDUE EDO C1502
05AC5SOFTWAREVAL D:182 , ILE D:217 , LYS D:218 , SER D:219 , LYS D:294 , ASP D:297 , HOH D:2230 , HOH D:2462BINDING SITE FOR RESIDUE EDO D1502
06AC6SOFTWARETYR B:367 , GLY B:368 , ARG D:363 , SER D:365 , THR D:497BINDING SITE FOR RESIDUE EDO D1503
07AC7SOFTWAREGLN B:35 , TYR B:43 , SER B:314 , TRP B:318 , HOH B:2472 , HOH B:2473 , HOH B:2474 , PHE D:371BINDING SITE FOR RESIDUE EDO B1504
08AC8SOFTWAREGLN A:35 , TYR A:43 , SER A:314 , SER A:317 , TRP A:318 , HOH A:2058 , HOH A:2456 , HOH A:2457 , PHE C:371BINDING SITE FOR RESIDUE EDO A1503
09AC9SOFTWAREPHE B:371 , GLN D:35 , TYR D:43 , SER D:314 , SER D:317 , TRP D:318 , HOH D:2066 , HOH D:2463 , HOH D:2464BINDING SITE FOR RESIDUE EDO D1504
10BC1SOFTWAREPHE A:371 , GLN C:35 , TYR C:43 , SER C:314 , SER C:317 , TRP C:318 , HOH C:2472 , HOH C:2473 , HOH C:2474BINDING SITE FOR RESIDUE EDO C1503
11BC2SOFTWAREASN A:29 , ASN A:30 , GLU A:440BINDING SITE FOR RESIDUE EDO A1504
12BC3SOFTWARELYS C:66 , VAL C:72 , ILE C:73 , ILE C:74 , ASP C:234 , HOH C:2475BINDING SITE FOR RESIDUE EDO C1504
13BC4SOFTWAREPHE D:17 , ASN D:29 , ASN D:30 , GLU D:440 , HOH D:2465BINDING SITE FOR RESIDUE EDO D1505
14BC5SOFTWARELYS C:127 , MET C:202BINDING SITE FOR RESIDUE EDO C1505
15BC6SOFTWAREASP D:123 , LYS D:127 , HOH D:2466BINDING SITE FOR RESIDUE EDO D1506
16BC7SOFTWARELYS B:127 , MET B:202 , HOH B:2171 , HOH B:2475BINDING SITE FOR RESIDUE EDO B1505
17BC8SOFTWARELYS A:127 , MET A:202 , ILE A:205 , HOH A:2459BINDING SITE FOR RESIDUE EDO A1505
18BC9SOFTWAREASN C:296 , ASP C:299 , EDO C:1507 , GOL C:1524 , HOH C:2320 , HOH C:2435BINDING SITE FOR RESIDUE EDO C1506
19CC1SOFTWARESER B:137 , ILE B:162 , GLY B:163 , ASN B:164 , THR B:188 , PRO B:215 , HOH B:2210BINDING SITE FOR RESIDUE EDO B1506
20CC2SOFTWARECYS C:221 , ASN C:296 , LEU C:452 , GLU C:453 , EDO C:1506 , GOL C:1522BINDING SITE FOR RESIDUE EDO C1507
21CC3SOFTWARECYS B:221 , ASN B:296 , GLU B:453 , LYS B:455 , GOL B:1523BINDING SITE FOR RESIDUE EDO B1507
22CC4SOFTWAREGLN A:125 , THR A:130 , TYR A:131 , SER A:283 , GLY A:286 , LEU A:287 , HOH A:2460 , HOH A:2461BINDING SITE FOR RESIDUE EDO A1506
23CC5SOFTWARETHR D:130 , TYR D:131 , GLY D:286 , LEU D:287 , HOH D:2467 , HOH D:2468BINDING SITE FOR RESIDUE EDO D1507
24CC6SOFTWAREGLN B:125 , THR B:130 , TYR B:131 , GLY B:286 , LEU B:287 , HOH B:2477 , HOH B:2478BINDING SITE FOR RESIDUE EDO B1508
25CC7SOFTWAREGLN C:125 , THR C:130 , TYR C:131 , GLY C:286 , LEU C:287 , HOH C:2477 , HOH C:2478BINDING SITE FOR RESIDUE EDO C1508
26CC8SOFTWAREGLU B:200 , LYS B:204 , ILE B:208 , THR B:209 , MET B:211BINDING SITE FOR RESIDUE EDO B1509
27CC9SOFTWARETRP B:198 , MET B:211 , LEU B:214 , PRO B:215 , GLU B:216 , EDO B:1516BINDING SITE FOR RESIDUE EDO B1510
28DC1SOFTWARETRP C:42 , GLU C:44 , TYR C:98 , ASN C:99 , EDO C:1513 , HOH C:2479BINDING SITE FOR RESIDUE EDO C1509
29DC2SOFTWAREILE B:62 , LYS B:66 , VAL B:72 , ILE B:73 , ILE B:74 , ASP B:234 , HOH B:2480BINDING SITE FOR RESIDUE EDO B1511
30DC3SOFTWAREARG A:91 , THR C:174 , ASN C:177 , GLY C:225 , LEU C:226 , LYS C:228 , HOH C:2220 , HOH C:2480 , HOH C:2481 , HOH C:2482BINDING SITE FOR RESIDUE EDO C1510
31DC4SOFTWARETRP D:198 , MET D:211 , LEU D:214 , HOH D:2469BINDING SITE FOR RESIDUE EDO D1508
32DC5SOFTWARETHR B:52 , TYR B:55 , HOH B:2481 , HOH B:2482BINDING SITE FOR RESIDUE EDO B1512
33DC6SOFTWAREGLU B:44 , TYR B:98 , ASN B:99 , HOH B:2483 , HOH B:2484BINDING SITE FOR RESIDUE EDO B1513
34DC7SOFTWAREASP C:46 , PRO C:47 , ILE C:48 , PRO C:96 , TYR C:98 , ASN C:99 , HOH C:2483BINDING SITE FOR RESIDUE EDO C1511
35DC8SOFTWAREVAL C:86 , ILE C:162 , GLY C:163 , ASN C:164 , THR C:188 , LEU C:214 , PRO C:215 , HOH C:2484BINDING SITE FOR RESIDUE EDO C1512
36DC9SOFTWAREVAL D:86 , ILE D:162 , GLY D:163 , ASN D:164 , THR D:188 , LEU D:214 , PRO D:215 , HOH D:2471BINDING SITE FOR RESIDUE EDO D1509
37EC1SOFTWARETYR C:98 , TRP C:143 , ASN C:147 , ASN C:148 , EDO C:1509 , HOH C:2485BINDING SITE FOR RESIDUE EDO C1513
38EC2SOFTWARETHR B:370 , PHE B:371 , ASN B:372 , CYS D:37 , LYS D:39 , PRO D:40 , GLY D:41 , TRP D:42 , TYR D:43 , HOH D:2138 , HOH D:2347BINDING SITE FOR RESIDUE EDO D1510
39EC3SOFTWARECYS A:37 , LYS A:39 , PRO A:40 , GLY A:41 , TRP A:42 , TYR A:43 , HOH A:2126 , HOH A:2341 , THR C:370 , PHE C:371 , ASN C:372BINDING SITE FOR RESIDUE EDO A1507
40EC4SOFTWARECYS B:37 , LYS B:39 , PRO B:40 , GLY B:41 , TRP B:42 , TYR B:43 , HOH B:2132 , HOH B:2356 , THR D:370 , PHE D:371 , ASN D:372BINDING SITE FOR RESIDUE EDO B1514
41EC5SOFTWAREPHE A:371 , ASN A:372 , LYS C:39 , GLY C:41 , TRP C:42 , LEU C:104 , THR C:106 , SER C:351 , HOH C:2356BINDING SITE FOR RESIDUE EDO C1514
42EC6SOFTWARETYR D:55 , ASN D:172 , LYS D:175 , SER D:229 , GLU D:230 , HIS D:231BINDING SITE FOR RESIDUE EDO D1511
43EC7SOFTWAREILE B:92 , PHE B:171 , LYS B:175 , GLY B:176BINDING SITE FOR RESIDUE EDO B1515
44EC8SOFTWAREVAL D:281 , TYR D:282 , THR D:284 , ASP D:400BINDING SITE FOR RESIDUE EDO D1512
45EC9SOFTWARETRP B:198 , MET B:211 , EDO B:1510 , HOH B:2234 , HOH B:2485BINDING SITE FOR RESIDUE EDO B1516
46FC1SOFTWARETRP B:42 , ARG B:107 , HOH B:2070 , HOH B:2487BINDING SITE FOR RESIDUE EDO B1517
47FC2SOFTWAREASN D:122 , GLN D:125 , TYR D:282BINDING SITE FOR RESIDUE EDO D1513
48FC3SOFTWARETHR C:341 , GLU C:384 , PHE C:388 , LYS C:486 , GLU C:489 , HOH C:2355BINDING SITE FOR RESIDUE EDO C1515
49FC4SOFTWAREGLU B:259 , GLY B:277 , GLU B:278 , LYS B:279 , LYS B:302 , HOH B:2488BINDING SITE FOR RESIDUE EDO B1518
50FC5SOFTWARETYR B:119 , ASN B:120 , ASP B:123 , HOH B:2475BINDING SITE FOR RESIDUE EDO B1519
51FC6SOFTWARETHR B:341 , ILE B:345 , GLU B:384 , PHE B:388 , LYS B:486 , GLU B:489 , HOH B:2489BINDING SITE FOR RESIDUE EDO B1520
52FC7SOFTWARESER B:28 , ASN B:29 , ASN B:30 , GLU B:440BINDING SITE FOR RESIDUE EDO B1521
53FC8SOFTWAREGLU C:392 , ASP C:395 , SER C:396 , HOH C:2486 , HOH C:2487BINDING SITE FOR RESIDUE EDO C1516
54FC9SOFTWAREPRO A:96 , TYR A:98 , ASN A:99BINDING SITE FOR RESIDUE EDO A1508
55GC1SOFTWAREASN D:29 , ASN D:56BINDING SITE FOR RESIDUE EDO D1514
56GC2SOFTWARETYR A:119 , LYS A:204 , ILE A:205BINDING SITE FOR RESIDUE EDO A1509
57GC3SOFTWAREPRO C:356 , HOH C:2487BINDING SITE FOR RESIDUE EDO C1517
58GC4SOFTWAREVAL A:86 , ILE A:162 , GLY A:163 , ASN A:164 , THR A:188 , LEU A:214 , PRO A:215 , HOH A:2191BINDING SITE FOR RESIDUE EDO A1510
59GC5SOFTWAREASN C:430 , THR C:431 , LYS C:432 , HIS C:475 , SER C:476 , HOH C:2488BINDING SITE FOR RESIDUE EDO C1518
60GC6SOFTWARESER C:28 , ASN C:29 , ASN C:30BINDING SITE FOR RESIDUE EDO C1519
61GC7SOFTWAREPRO C:233 , LEU C:236 , HOH C:2489BINDING SITE FOR RESIDUE EDO C1520
62GC8SOFTWARESER D:116 , TYR D:119 , ASN D:121 , HOH D:2472 , HOH D:2473BINDING SITE FOR RESIDUE EDO D1515
63GC9SOFTWAREGLN C:82 , ARG C:83 , GLU C:84 , TRP C:103 , TYR C:135 , ASP C:246 , GLN C:247 , PHE C:271 , HOH C:2006 , HOH C:2490BINDING SITE FOR RESIDUE GOL C1521
64HC1SOFTWAREARG A:83 , GLU A:84 , TRP A:103 , TYR A:135 , ASP A:246 , GLN A:247 , PHE A:271 , HOH A:2462 , HOH A:2463BINDING SITE FOR RESIDUE GOL A1511
65HC2SOFTWAREGLN D:82 , ARG D:83 , GLU D:84 , TRP D:103 , TYR D:135 , ASP D:246 , GLN D:247 , PHE D:271 , HOH D:2474 , HOH D:2475BINDING SITE FOR RESIDUE GOL D1516
66HC3SOFTWARETHR B:11 , ARG B:83 , GLU B:84 , TRP B:103 , TYR B:135 , ASP B:246 , GLN B:247 , PHE B:271 , HOH B:2490 , HOH B:2491BINDING SITE FOR RESIDUE GOL B1522
67HC4SOFTWARESER B:219 , CYS B:221 , ASN B:296 , ASP B:297 , GLU B:453 , EDO B:1507 , HOH B:2263 , HOH B:2432 , HOH B:2492BINDING SITE FOR RESIDUE GOL B1523
68HC5SOFTWARECYS C:221 , ASN C:296 , ASP C:297 , GLU C:453 , EDO C:1507 , HOH C:2429 , HOH C:2491 , HOH C:2492BINDING SITE FOR RESIDUE GOL C1522
69HC6SOFTWAREGLU A:114 , ALA A:117BINDING SITE FOR RESIDUE GOL A1512
70HC7SOFTWAREASN C:29 , LEU C:31 , ASN C:56 , GLU C:60BINDING SITE FOR RESIDUE GOL C1523
71HC8SOFTWARETYR C:293 , LYS C:294 , PHE C:295 , ASP C:299 , LYS C:300 , LYS C:302 , EDO C:1506 , HOH C:2313 , HOH C:2494BINDING SITE FOR RESIDUE GOL C1524
72HC9SOFTWARELYS B:477 , ASP B:479 , LYS C:75 , VAL C:454 , LYS C:455 , HOH C:2495 , HOH C:2496 , HOH C:2497BINDING SITE FOR RESIDUE GOL C1525
73IC1SOFTWARELYS B:75 , VAL B:454 , ASP C:479 , HOH C:2498BINDING SITE FOR RESIDUE GOL C1526
74IC2SOFTWAREGLU C:200 , ILE C:208 , MET C:211 , HOH C:2242 , HOH C:2253 , HOH C:2499BINDING SITE FOR RESIDUE GOL C1527

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2W40)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ala A:355 -Pro A:356
2Gly B:-1 -Ser B:0
3Ala B:355 -Pro B:356
4Ala C:355 -Pro C:356
5Gly D:-1 -Ser D:0
6Ala D:355 -Pro D:356

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2W40)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2W40)

(-) Exons   (0, 0)

(no "Exon" information available for 2W40)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:501
 aligned with Q8IDI4_PLAF7 | Q8IDI4 from UniProtKB/TrEMBL  Length:501

    Alignment length:501
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500 
         Q8IDI4_PLAF7     1 MNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTLIQL 501
               SCOP domains d2w40a1 A:1-254 automated matches                                                                                                                                                                                                                             d2w40a2 A:255-501 automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeee....eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee....eeeee.........ee......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhh...eeehhhhh............hhhhhhhh...hhhhh.eee..eeeeee.....hhhhh..eeeeeeehhhhhhhhh.......eeeee...eeeeee............eeeeee........eeeeeeee..hhhhhhhhhhh....hhhhhhhhhhhh......eee................eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeehhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh....hhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w40 A   1 MNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTLIQL 501
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500 


Chain B from PDB  Type:PROTEIN  Length:503
 aligned with Q8IDI4_PLAF7 | Q8IDI4 from UniProtKB/TrEMBL  Length:501

    Alignment length:503
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498   
         Q8IDI4_PLAF7     - --MNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTLIQL 501
               SCOP domains d2w40b1 B:-1-254 automated matches                                                                                                                                                                                                                              d2w40b2 B:255-501 automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee...eeeeeee.....eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee....eeeee.........ee......hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhh...eeehhhhh............hhhhhhhh...hhhhh.eee..eeeeee.....hhhhh..eeeeeeehhhhhhhhh.......eeeee...eeeeee............eeeeee........eeeeeeee..hhhhhhhhhhh....hhhhhhhhhhhh......eee................eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeehhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh.....hhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w40 B  -1 GSMNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTLIQL 501
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498   


Chain C from PDB  Type:PROTEIN  Length:502
 aligned with Q8IDI4_PLAF7 | Q8IDI4 from UniProtKB/TrEMBL  Length:501

    Alignment length:502
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499  
         Q8IDI4_PLAF7     - -MNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTLIQL 501
               SCOP domains d2w40c1 C:0-254 automated matches                                                                                                                                                                                                                              d2w40c2 C:255-501 automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...eeeeeee.....eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee....eeeee.........ee......hhhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhh...eeehhhhh............hhhhhhhh...hhhhh.eee..eeeeee.....hhhhh..eeeeeeehhhhhhhhh.......eeeee...eeeeeeee..........eeeeee........eeeeeeee..hhhhhhhhhhh....hhhhhhhhhhhh......eee................eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeehhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh....hhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w40 C   0 SMNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTLIQL 501
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499  


Chain D from PDB  Type:PROTEIN  Length:503
 aligned with Q8IDI4_PLAF7 | Q8IDI4 from UniProtKB/TrEMBL  Length:501

    Alignment length:503
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498   
         Q8IDI4_PLAF7     - --MNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTLIQL 501
               SCOP domains d2w40d1 D:-1-254 automated matches                                                                                                                                                                                                                              d2w40d2 D:255-501 automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----FGGY_N-2w40D05 D:3-253                                                                                                                                                                                                                                     --------FGGY_C-2w40D01 D:262-454                                                                                                                                                                         ----------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----FGGY_N-2w40D06 D:3-253                                                                                                                                                                                                                                     --------FGGY_C-2w40D02 D:262-454                                                                                                                                                                         ----------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----FGGY_N-2w40D07 D:3-253                                                                                                                                                                                                                                     --------FGGY_C-2w40D03 D:262-454                                                                                                                                                                         ----------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----FGGY_N-2w40D08 D:3-253                                                                                                                                                                                                                                     --------FGGY_C-2w40D04 D:262-454                                                                                                                                                                         ----------------------------------------------- Pfam domains (4)
         Sec.struct. author ..eeeeeeeee...eeeeeeee....eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee....eeeee.........ee......hhhhhhhhhh..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhh....eeehhhhh............hhhhhhhh...hhhhh.eee..eeeeee.....hhhhh..eeeeeeehhhhhhhhh.......eeeee...eeeeee............eeeeee........eeeeeeee..hhhhhhhhhhh....hhhhhhhhhhhh......eee................eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeehhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh....hhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w40 D  -1 GSMNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVERTLIQL 501
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2W40)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: Actin_ATPase (173)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8IDI4_PLAF7 | Q8IDI4)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004370    glycerol kinase activity    Catalysis of the reaction: ATP + glycerol = sn-glycerol 3-phosphate + ADP + 2 H(+).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016773    phosphotransferase activity, alcohol group as acceptor    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006071    glycerol metabolic process    The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
    GO:0046167    glycerol-3-phosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of glycerol-3-phosphate, a phosphoric monoester of glycerol.
    GO:0006072    glycerol-3-phosphate metabolic process    The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006641    triglyceride metabolic process    The chemical reactions and pathways involving triglyceride, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins.
cellular component
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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  2w40
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  2.7.1.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8IDI4_PLAF7 | Q8IDI4: 2w41

(-) Related Entries Specified in the PDB File

2w41 CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM GLYCEROL KINASE WITH ADP