2W3P - JenaLib

Title :   BOXC CRYSTAL STRUCTURE

Authors :   J. Bains, M. J. Boulanger

Date :   13 Nov 08 (Deposition) - 14 Apr 09 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   Coa, Boxc, Lyase, Crotonase, Ring Cleaving, Burkholderia Xenovorans Lb400 Crotonase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Bains, R. Leon, M. J. Boulanger
Structural And Biophysical Characterization Of Boxc From Burkholderia Xenovorans Lb400: A Novel Ring-Cleaving Enzyme In The Crotonase Superfamily.
J. Biol. Chem. V. 284 16377 2009
PubMed-ID: 19369256 | Reference-DOI: 10.1074/JBC.M900226200

Compounds

Molecule 1 - BENZOYL-COA-DIHYDRODIOL LYASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organism Scientific	:	BURKHOLDERIA XENOVORANS
	Organism Taxid	:	266265
	Strain	:	LB400
	Synonym	:	BOXC, DIHYDRODIOL LYASE

Structural Features

Chains, Units

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:111 , GLY A:177 , THR A:178 , GLN A:524 , PHE A:528 , HOH A:848	binding site for residue BME A 601
2	AC2	SOFTWARE	ILE A:36 , ILE A:38 , ASN A:53 , TYR A:55 , VAL A:59 , CYS A:91 , LEU A:147 , HOH A:767	binding site for residue BME A 602
3	AC3	SOFTWARE	VAL A:461 , GLU A:462 , ARG A:465 , HOH A:1053	binding site for residue GOL A 603
4	AC4	SOFTWARE	ASP A:123 , ARG A:126 , HIS A:127 , MET A:429 , HIS A:432 , HOH A:791 , HOH A:847 , HOH A:903	binding site for residue GOL A 604
5	AC5	SOFTWARE	ASP B:123 , ARG B:126 , HIS B:127 , MET B:429 , HIS B:432 , HOH B:871 , HOH B:894 , HOH B:898 , HOH B:1156	binding site for residue GOL B 603
6	AC6	SOFTWARE	SER B:92 , ASN B:95 , ILE B:96 , HOH B:746 , HOH B:828 , HOH B:844 , HOH B:1098	binding site for residue GOL B 604
7	AC7	SOFTWARE	LYS B:107 , VAL B:108 , ASN B:109 , PHE B:110 , LYS B:112 , PHE B:113 , THR B:114 , ASN B:115 , GLY B:177 , THR B:178 , GLN B:524 , PHE B:528 , HOH B:790	binding site for Di-peptide BME B 601 and CYS B 111
8	AC8	SOFTWARE	ILE B:36 , ILE B:38 , ASN B:53 , TYR B:55 , VAL B:59 , PHE B:90 , SER B:92 , GLY B:93 , ALA B:139 , CYS B:140 , ALA B:141 , GLY B:144 , LEU B:147 , HOH B:775	binding site for Di-peptide BME B 602 and CYS B 91

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:547
 aligned with Q13WK7_PARXL | Q13WK7 from UniProtKB/TrEMBL  Length:556

    Alignment length:547
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       
         Q13WK7_PARXL    10 PVDYRTDPSQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEANLRFNGPETMETRIFGRLTAWQNWIFNRPNAVGEKGALKVYGKGSKAQFDVSRV 556
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh..eeeeee..eeeeee.................eehhhhhhhhhhhhhhhhhhh....eeeeee....eee.eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeehhhhhhhhhh.eeeee......ee.hhhhhhh.....hhhhhhhhh...hhhhhhhhh......hhhhhhhh....eeehhhhhhhhhhhhhhhhhh..................eee..eeee..eeeeee....eeeeeee........hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...eeeeee.....ee..hhhhhhh..eeee............ee.hhhhh.........hhhhhhh..hhhhhhhhhh......hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w3p A  10 PVDYRTDPSQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEANLRFNGPETMETRIFGRLTAWQNWIFNRPNAVGEKGALKVYGKGSKAQFDVSRV 556
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549

Chain B from PDB  Type:PROTEIN  Length:548
 aligned with Q13WK7_PARXL | Q13WK7 from UniProtKB/TrEMBL  Length:556

    Alignment length:548
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548        
         Q13WK7_PARXL     9 APVDYRTDPSQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEANLRFNGPETMETRIFGRLTAWQNWIFNRPNAVGEKGALKVYGKGSKAQFDVSRV 556
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh..eeeeee..eeeeee.................eehhhhhhhhhhhhhhhhhhh....eeeeee....eee.eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeehhhhhhhhhh.eeeee.....eee.hhhhhhh.....hhhhhhhhh...hhhhhhhhhh.....hhhhhhhh....eeehhhhhhhhhhhhhhhhhh..................eee..eeee..eeeeee....eeeeeee........hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...eeeeee.....ee...hhhhhh..eeee.....hhhhh..ee.hhhhh.........hhhhhhh..hhhhhhhhhh......hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w3p B   9 APVDYRTDPSQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEANLRFNGPETMETRIFGRLTAWQNWIFNRPNAVGEKGALKVYGKGSKAQFDVSRV 556
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

Asymmetric/Biological Unit(show GO term definitions)

Chain A,B (Q13WK7_PARXL | Q13WK7)

molecular function
	GO:0003824	catalytic activity
biological process
	GO:0008152	metabolic process

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