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(-) Description

Title :  HEMOGLOBIN (HB2) FROM TREMATODE FASCIOLA HEPATICA
 
Authors :  S. Dewilde, A. I. Ioanitescu, L. Kiger, K. Gilany, M. C. Marden, S. Van Doorslaer, J. Vercruysse, A. Pesce, M. Nardini, M. Bolognesi, L. Moens
Date :  29 Jul 08  (Deposition) - 12 Aug 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Hemoglobin, Trematode, Oxygen Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Dewilde, A. I. Ioanitescu, L. Kiger, K. Gilany, M. C. Marden, S. Van Doorslaer, J. Vercruysse, A. Pesce, M. Nardini, M. Bolognesi, L. Moens
The Hemoglobins Of The Trematodes Fasciola Hepatica And Paramphistomum Epiclitum: A Molecular Biological, Physico-Chemical, Kinetic, And Vaccination Study.
Protein Sci. V. 17 1653 2008
PubMed-ID: 18621914  |  Reference-DOI: 10.1110/PS.036558.108

(-) Compounds

Molecule 1 - HEMOGLOBIN
    Chains: A
    Organism Scientific: FASCIOLA HEPATICA
    Organism Taxid: 6192

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2OXY1Ligand/IonOXYGEN MOLECULE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:43 , TYR A:46 , PHE A:47 , SER A:48 , TYR A:66 , TYR A:67 , THR A:70 , LEU A:71 , GLU A:74 , ASP A:98 , HIS A:99 , ARG A:102 , VAL A:104 , PHE A:109 , ALA A:112 , PHE A:116 , MET A:141 , OXY A:150 , HOH A:2032 , HOH A:2107BINDING SITE FOR RESIDUE HEM A 149
2AC2SOFTWARETYR A:33 , PHE A:47 , HEM A:149BINDING SITE FOR RESIDUE OXY A 150

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VYW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VYW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VYW)

(-) Exons   (0, 0)

(no "Exon" information available for 2VYW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains d2vywa_ A: automated matches                                                                                                                         SCOP domains
               CATH domains 2vywA00 A:1-148 Globins                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vyw A   1 AVLTQTQIDSILADLAHHTDTTEHITEMGVSIYKTLFAAHPEYISYFSKLQGLTKDNVGQSEGIRYYGRTLGEELIRLLKAASNPSVLEERIVQGAKDHKARPVTKDQFTGAAPIFIKFFQGLLKKQEDKDAIEKFLLHVMQAIAAKM 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2VYW)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2VYW)

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  2vyw
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