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(-) Description

Title :  STRUCTURE OF E.COLI GAPDH RAT SPERM GAPDH HETEROTETRAMER
 
Authors :  J. Frayne, A. Taylor, L. Hall, A. Hadfield
Date :  29 Jul 08  (Deposition) - 05 Aug 08  (Release) - 25 Aug 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.38
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Contraceptive, Oxidoreductase, Alpha Chlorohydrin, Glyceraldehyde-3-Phosphate, Nad, Gapdh, Rat Sperm, Cytoplasm, Glycolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Frayne, A. Taylor, G. Cameron, A. T. Hadfield
Structure Of Insoluble Rat Sperm Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) Via Heterotetramer Formation With Escherichia Coli Gapdh Reveals Target For Contraceptive Design.
J. Biol. Chem. V. 284 22703 2009
PubMed-ID: 19542219  |  Reference-DOI: 10.1074/JBC.M109.004648

(-) Compounds

Molecule 1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
    Chains: D
    EC Number: 1.2.1.12
    Fragment: RESIDUES 102-432
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Other Details: POLY PROLINE N-TERMINUS REPLACED
    Other Details - Source: DNA WAS EXTRACTED DIRECTLY FROM RAT TESTIS
    Tissue: TESTIS
 
Molecule 2 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
    Chains: A, B, C
    EC Number: 1.2.1.12
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: BL21PLYSS

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 27)

Asymmetric/Biological Unit (5, 27)
No.NameCountTypeFull Name
11GP1Ligand/IonSN-GLYCEROL-1-PHOSPHATE
2CSD7Mod. Amino Acid3-SULFINOALANINE
3CSX1Mod. Amino AcidS-OXY CYSTEINE
4FMT14Ligand/IonFORMIC ACID
5NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECSD D:149 , HIS D:176 , THR D:179 , THR D:181 , ARG D:231 , NAD D:1340 , HOH D:2210BINDING SITE FOR RESIDUE 1GP D1334
02AC2SOFTWAREMET A:127 , ASN A:133 , LYS A:215 , HOH A:2208BINDING SITE FOR RESIDUE FMT A1330
03AC3SOFTWAREPRO C:126 , MET C:127 , HOH C:2183BINDING SITE FOR RESIDUE FMT C1330
04AC4SOFTWAREMET D:126 , HOH D:2211 , HOH D:2212BINDING SITE FOR RESIDUE FMT D1335
05AC5SOFTWAREPRO B:126 , MET B:127 , LYS B:215 , HOH B:2197BINDING SITE FOR RESIDUE FMT B1330
06AC6SOFTWAREGLU C:285 , HOH C:2148 , ARG D:51BINDING SITE FOR RESIDUE FMT D1336
07AC7SOFTWAREARG A:51 , ASN B:283 , GLU B:285BINDING SITE FOR RESIDUE FMT B1331
08AC8SOFTWAREPRO D:120 , SER D:148 , THR D:151 , GLY D:209 , ALA D:210 , ALA D:213 , HOH D:2213 , HOH D:2214 , HOH D:2215BINDING SITE FOR RESIDUE FMT D1337
09AC9SOFTWAREGLY D:130 , GLU D:133 , PRO D:266BINDING SITE FOR RESIDUE FMT D1338
10BC1SOFTWAREARG A:51 , THR B:273 , GLU B:285BINDING SITE FOR RESIDUE FMT A1331
11BC2SOFTWARETHR B:273 , GLU B:274BINDING SITE FOR RESIDUE FMT B1332
12BC3SOFTWAREGLY A:131 , ALA A:132 , PHE A:134 , HOH A:2209 , HOH A:2210BINDING SITE FOR RESIDUE FMT A1332
13BC4SOFTWAREGLY B:131 , PHE B:134 , ASP B:135 , HOH B:2069BINDING SITE FOR RESIDUE FMT B1333
14BC5SOFTWAREARG D:17 , HOH D:2216BINDING SITE FOR RESIDUE FMT D1339
15BC6SOFTWAREGLY C:131 , ALA C:132 , ASN C:133 , PHE C:134BINDING SITE FOR RESIDUE FMT C1331
16BC7SOFTWAREGLY A:7 , PHE A:8 , GLY A:9 , ARG A:10 , ILE A:11 , ASN A:31 , ASP A:32 , ARG A:76 , ALA A:94 , THR A:95 , GLY A:96 , LEU A:97 , THR A:118 , CSD A:148 , ALA A:179 , ASN A:312 , HOH A:2097 , HOH A:2211 , HOH A:2213 , HOH A:2214 , HOH A:2216 , HOH A:2217 , HOH A:2218 , HOH A:2219BINDING SITE FOR RESIDUE NAD A1333
17BC8SOFTWAREASN B:6 , GLY B:9 , ARG B:10 , ILE B:11 , ASN B:31 , ASP B:32 , LEU B:33 , ARG B:76 , ALA B:94 , THR B:95 , GLY B:96 , LEU B:97 , THR B:118 , CSD B:148 , ALA B:179 , ASN B:312 , GLU B:313 , TYR B:316 , HOH B:2049 , HOH B:2187 , HOH B:2198 , HOH B:2200 , HOH B:2202 , HOH B:2203 , HOH B:2204 , HOH B:2205 , HOH B:2206 , HOH B:2207 , PRO C:187BINDING SITE FOR RESIDUE NAD B1334
18BC9SOFTWAREGLY C:7 , PHE C:8 , GLY C:9 , ARG C:10 , ILE C:11 , ASN C:31 , ASP C:32 , ARG C:76 , ALA C:94 , THR C:95 , GLY C:96 , LEU C:97 , THR C:118 , CSD C:148 , ALA C:179 , ASN C:312 , TYR C:316 , HOH C:2003 , HOH C:2050 , HOH C:2057 , HOH C:2075 , HOH C:2087 , HOH C:2185 , HOH C:2186 , HOH C:2187 , HOH C:2188 , HOH C:2189 , HOH C:2190BINDING SITE FOR RESIDUE NAD C1332
19CC1SOFTWAREHOH A:2117 , ASN D:6 , GLY D:7 , PHE D:8 , GLY D:9 , ARG D:10 , ILE D:11 , ASN D:30 , ASP D:31 , PRO D:32 , PHE D:33 , LYS D:76 , ALA D:94 , THR D:95 , GLY D:96 , TYR D:98 , THR D:118 , ALA D:119 , CSD D:149 , ALA D:180 , ASN D:313 , TYR D:317 , 1GP D:1334 , HOH D:2063 , HOH D:2115 , HOH D:2210 , HOH D:2217 , HOH D:2218 , HOH D:2219 , HOH D:2220 , HOH D:2221 , HOH D:2222BINDING SITE FOR RESIDUE NAD D1340

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VYV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp C:60 -Gly C:61
2Gly C:61 -His C:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (3, 9)

Asymmetric/Biological Unit (3, 9)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_G3P1_ECOLI_001 *Y43IG3P1_ECOLI  ---  ---A/B/CY41I
2UniProtVAR_G3P1_ECOLI_002 *G266DG3P1_ECOLI  ---  ---A/B/CG264D
3UniProtVAR_G3P1_ECOLI_003 *E267AG3P1_ECOLI  ---  ---A/B/CE265A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P1_ECOLI148-155
 
 		  3A:146-153
B:146-153
C:146-153
G3PT_RAT246-253  1D:147-154

(-) Exons   (0, 0)

(no "Exon" information available for 2VYV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
 aligned with G3P1_ECOLI | P0A9B2 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331
           G3P1_ECOLI     2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
               SCOP domains d2vyva1 A:0-146,A:311-329 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                         d2vyva2 A:147-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                  d2vyva1             SCOP domains
               CATH domains 2vyvA01 A:0-146,A:313-329 NAD(P)-binding Rossmann-like Domain                                                                                      2vyvA02 A:147-312 Dihydrodipicolinate Reductase; domain 2                                                                                                             2vyvA01           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee...............hhhhh....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee..............hhhhhhhhhhh.eee....hhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeeeeeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DA---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vyv A   0 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNAScTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVcTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 329
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329
                                                                                                                                                                              148-CSD                                                                                                                                    287-CSD                                      


Chain B from PDB  Type:PROTEIN  Length:330
 aligned with G3P1_ECOLI | P0A9B2 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331
           G3P1_ECOLI     2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
               SCOP domains d2vyvb1 B:0-146,B:311-329 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                         d2vyvb2 B:147-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                  d2vyvb1             SCOP domains
               CATH domains 2vyvB01 B:0-146,B:313-329 NAD(P)-binding Rossmann-like Domain                                                                                      2vyvB02 B:147-312 Dihydrodipicolinate Reductase; domain 2                                                                                                             2vyvB01           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhhhhhhh...eeee......hhhhhhhhhhh...eeee...............hhhhh....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeee................hhhhh......eee..hhhhhhhhhhhhhh..eeeeeee......eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee....eeee..eeeeeeee..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -----------------------------------------I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DA---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vyv B   0 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNAScTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVcTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 329
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329
                                                                                                                                                                              148-CSD                                                                                                                                    287-CSD                                      


Chain C from PDB  Type:PROTEIN  Length:330
 aligned with G3P1_ECOLI | P0A9B2 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331
           G3P1_ECOLI     2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
               SCOP domains d2vyvc1 C:0-146,C:311-329 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                         d2vyvc2 C:147-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                  d2vyvc1             SCOP domains
               CATH domains 2vyvC01 C:0-146,C:313-329 NAD(P)-binding Rossmann-like Domain                                                                                      2vyvC02 C:147-312 Dihydrodipicolinate Reductase; domain 2                                                                                                             2vyvC01           CATH domains
           Pfam domains (1) -Gp_dh_N-2vyvC04 C:1-148                                                                                                                             ----Gp_dh_C-2vyvC01 C:153-310                                                                                                                                     ------------------- Pfam domains (1)
           Pfam domains (2) -Gp_dh_N-2vyvC05 C:1-148                                                                                                                             ----Gp_dh_C-2vyvC02 C:153-310                                                                                                                                     ------------------- Pfam domains (2)
           Pfam domains (3) -Gp_dh_N-2vyvC06 C:1-148                                                                                                                             ----Gp_dh_C-2vyvC03 C:153-310                                                                                                                                     ------------------- Pfam domains (3)
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhh..........eee....eee..eeeeee...hhhhhhhhhh...eeee......hhhhhhhhhhh...eeee...............hhhhh....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeee................hhhhh......eeee....hhhhhhhhhhh..eeeeeee......eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee....eeee..eeeeeeee..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DA---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vyv C   0 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNAScTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVcTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 329
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329
                                                                                                                                                                              148-CSD                                                                                                                                    287-CSD                                      


Chain D from PDB  Type:PROTEIN  Length:334
 aligned with G3PT_RAT | Q9ESV6 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:334
                                   108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428    
             G3PT_RAT    99 ELTVGINGFGRIGRLVLRVCMEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVEHKNGRLVVDNLEINVFQCKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPDAPMLVMGVNEKDYNPGSMTVVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHAYTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYMFSREK 432
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vyvD01 D:0-146,D:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      2vyvD02 D:147-313 Dihydrodipicolinate Reductase; domain 2                                                                                                              2vyvD01              CATH domains
               Pfam domains ---Gp_dh_N-2vyvD02 D:3-149                                                                                                                            ----Gp_dh_C-2vyvD01 D:154-311                                                                                                                                     ---------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh....eee..............hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee..............hhhhhh......eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheeee..eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vyv D   0 MVKVGINGFGRIGRLVLRVCMEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVEHKNGRLVVDNLEINVFQcKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPDAPMLVMGVNEKDYNPGSMTVVSNAScTTNCLAPLAKVIHERFGIVEGLMTTVHAYTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYMFSREK 333
                                     9        19        29        39        49        59        69     |  79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                                                                      75-CSX                                                                   149-CSD
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (4, 8)

Asymmetric/Biological Unit
(-)
Clan: GADPH_aa-bio_dh (59)
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (16, 25)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (G3P1_ECOLI | P0A9B2)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain D   (G3PT_RAT | Q9ESV6)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0007286    spermatid development    The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure.
cellular component
    GO:0001669    acrosomal vesicle    A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031514    motile cilium    A cilium which may have a variable arrangement of axonemal microtubules and also contains molecular motors. It may beat with a whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface, such as on epithelial cells that line the lumenal ducts of various tissues; or they may display a distinct twirling motion that directs fluid flow asymmetrically across the cellular surface to affect asymmetric body plan organization. Motile cilia can be found in single as well as multiple copies per cell.

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  2vyv
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  G3PT_RAT | Q9ESV6
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  1.2.1.12
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G3P1_ECOLI | P0A9B2: 1dc3 1dc4 1dc5 1dc6 1gad 1gae 1s7c 2vyn
        G3PT_RAT | Q9ESV6: 2vyn

(-) Related Entries Specified in the PDB File

1dc3 STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3- PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR- INDUCED CONFORMATIONAL CHANGES
1dc4 STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3- PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR- INDUCED CONFORMATIONAL CHANGES
1dc5 STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3- PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR- INDUCED CONFORMATIONAL CHANGES
1dc6 STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3- PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR- INDUCED CONFORMATIONAL CHANGES.
1gad MOL_ID: 1; MOLECULE: D-GLYCERALDEHYDE-3- PHOSPHATE DEHYDROGENASE; CHAIN: O, P; EC: 1 .2.1.12; ENGINEERED: YES; OTHER_DETAILS: WILD TYPE, HOLO FORM
1gae MOL_ID: 1; MOLECULE: D-GLYCERALDEHYDE-3- PHOSPHATE DEHYDROGENASE; CHAIN: O, P; EC: 1 .2.1.12; ENGINEERED: YES; MUTATION: N313T ; OTHER_DETAILS: HOLO FORM
1s7c CRYSTAL STRUCTURE OF MES BUFFER BOUND FORM OFGLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIACOLI
2vyn STRUCTURE OF E.COLI GAPDH RAT SPERM GAPDH HETEROTETRAMER