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(-) Description

Title :  THE STRUCTURE OF MAO-N-D5, A VARIANT OF MONOAMINE OXIDASE FROM ASPERGILLUS NIGER.
 
Authors :  K. E. Atkin, S. Hart, J. P. Turkenburg, A. M. Brzozowski, G. J. Grogan
Date :  10 Jun 08  (Deposition) - 04 Nov 08  (Release) - 23 Dec 08  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Monoamine Oxidase, Aspergillus Niger, Fad, Peroxisome, Flavoprotein, Oxidoreductase, Enantioselectivity, Directed Evolution Variant (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. E. Atkin, R. Reiss, V. Koehler, K. R. Bailey, S. Hart, J. P. Turkenburg, N. J. Turner, A. M. Brzozowski, G. J. Grogan
The Structure Of Monoamine Oxidase From Aspergillus Niger Provides A Molecular Context For Improvements In Activity Obtained By Directed Evolution.
J. Mol. Biol. V. 384 1218 2008
PubMed-ID: 18951902  |  Reference-DOI: 10.1016/J.JMB.2008.09.090

(-) Compounds

Molecule 1 - MONOAMINE OXIDASE N
    Chains: A, B
    EC Number: 1.4.3.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA 2 DE3
    Expression System Taxid: 562
    Expression System Vector: YSBLIC3C
    Mutation: YES
    Organism Scientific: ASPERGILLUS NIGER
    Organism Taxid: 5061
    Other Details: FLAVIN ADENINE DINUCLEOTIDE COFACTOR
    Synonym: MONOAMINE OXIDASE, MAO-N

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3PRO2Mod. Amino AcidPROLINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:45 , GLY A:46 , GLY A:48 , TYR A:49 , CYS A:50 , GLU A:69 , ALA A:70 , ARG A:71 , GLY A:76 , ARG A:77 , GLY A:91 , GLY A:92 , THR A:93 , TRP A:94 , PRO A:278 , VAL A:279 , THR A:307 , PRO A:309 , TRP A:420 , PHE A:425 , ALA A:429 , TRP A:430 , ASN A:456 , SER A:457 , SER A:465 , PHE A:466 , ILE A:467 , ALA A:470 , PRO A:601 , EDO A:602 , HOH A:2030 , HOH A:2222 , HOH A:2227 , HOH A:2323 , HOH A:2346 , HOH A:2355 , HOH A:2356BINDING SITE FOR RESIDUE FAD A 600
02AC2SOFTWARETRP A:230 , TRP A:430 , SER A:465 , PHE A:466 , FAD A:600 , PRO A:601 , HOH A:2357BINDING SITE FOR RESIDUE EDO A 602
03AC3SOFTWAREPHE A:170 , ASP A:173 , TYR A:176 , HIS B:112 , ASN B:113 , ALA B:114 , LEU B:115 , HOH B:2078BINDING SITE FOR RESIDUE EDO A 603
04AC4SOFTWAREHIS A:112 , ASN A:113 , ALA A:114 , LEU A:115 , LYS A:251 , HOH A:2070 , PHE B:170 , ASP B:173 , TYR B:176BINDING SITE FOR RESIDUE EDO A 604
05AC5SOFTWAREILE B:45 , GLY B:46 , GLY B:48 , TYR B:49 , CYS B:50 , GLU B:69 , ALA B:70 , ARG B:71 , GLY B:76 , ARG B:77 , GLY B:91 , GLY B:92 , THR B:93 , TRP B:94 , PRO B:278 , VAL B:279 , THR B:307 , PRO B:309 , TRP B:420 , PHE B:425 , ALA B:429 , TRP B:430 , ASN B:456 , SER B:457 , SER B:465 , PHE B:466 , ILE B:467 , ALA B:470 , PRO B:601 , EDO B:602 , HOH B:2040 , HOH B:2041 , HOH B:2231 , HOH B:2236 , HOH B:2310 , HOH B:2334 , HOH B:2345BINDING SITE FOR RESIDUE FAD B 600
06AC6SOFTWARETRP B:230 , TRP B:430 , SER B:465 , PHE B:466 , FAD B:600 , PRO B:601 , HOH B:2346BINDING SITE FOR RESIDUE EDO B 602
07AC7SOFTWAREGLU A:393 , ASN B:120 , ARG B:123 , ARG B:351 , THR B:371 , HOH B:2347 , HOH B:2348BINDING SITE FOR RESIDUE EDO B 603
08AC8SOFTWAREARG A:104 , HOH A:2061 , ARG B:56 , ASP B:57 , ARG B:104 , ARG B:108BINDING SITE FOR RESIDUE EDO B 604
09AC9SOFTWARETRP A:94 , LEU A:213 , LEU A:245 , LYS A:340 , PHE A:382 , TRP A:430 , FAD A:600 , EDO A:602BINDING SITE FOR RESIDUE PRO A 601
10BC1SOFTWARETRP B:94 , LEU B:245 , LYS B:340 , PHE B:382 , TRP B:430 , FAD B:600 , EDO B:602BINDING SITE FOR RESIDUE PRO B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VVM)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Ser A:26 -Pro A:27
2Gly A:38 -Pro A:39
3Ser A:319 -Pro A:320
4Tyr A:358 -Pro A:359
5Ser B:26 -Pro B:27
6Ser B:319 -Pro B:320
7Tyr B:358 -Pro B:359

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VVM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VVM)

(-) Exons   (0, 0)

(no "Exon" information available for 2VVM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:481
 aligned with AOFN_ASPNG | P46882 from UniProtKB/Swiss-Prot  Length:495

    Alignment length:487
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       
           AOFN_ASPNG     1 MTSRDGYQWTPETGLTQGVPSLGVISPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLISYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFAAKRLVCTIPLNVLSTIQFSPALSTERISAMQAGHVNMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGTDANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHRGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGT 487
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeee..............------..eeeeee..hhhhhhhhhhhhhh...eeee...........eeee..eeee.........hhhhhhhhhhh.....eee.........eeeee......eeehhhhhhhhhhhhhhhhhh....................hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhhhheee..hhhhhhhhhhhhhhh...eeee....eeeeee....eeeee....eeeeeeeee..hhhhhhhheee...hhhhhhhhhhh.....eeeeeee.hhhhh.eeeee.......eeeeeee.....eeeeeee..........hhhhhhhhhhh.......eeeeee..................hhhhhhhhhhhh....eee.hhhhh.....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vvm A   1 MTSRDGYQWTPETGLTQGVPSLGVISPPTNI------GPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGT 487
                                    10        20        30|      |40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       
                                                         31     38                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:478
 aligned with AOFN_ASPNG | P46882 from UniProtKB/Swiss-Prot  Length:495

    Alignment length:486
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480      
           AOFN_ASPNG     1 MTSRDGYQWTPETGLTQGVPSLGVISPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLISYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFAAKRLVCTIPLNVLSTIQFSPALSTERISAMQAGHVNMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGTDANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHRGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELG 486
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ------------------------------------------------Amino_oxidase-2vvmB01 B:49-482                                                                                                                                                                                                                                                                                                                                                                                                                    ---- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------Amino_oxidase-2vvmB02 B:49-482                                                                                                                                                                                                                                                                                                                                                                                                                    ---- Pfam domains (2)
         Sec.struct. author ......eeee...eeee..............--------..eeee..hhhhhhhhhhhhhh...eeee...........eeee..eeee.........hhhhhhhhhhh.....eee.........eeeee......eeehhhhhhhhhhhhhhhhhh....................hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhhhheee..hhhhhhhhhhhhhhhh..eeee....eeeeeee..eeeeee....eeee.eeee..hhhhhhhheee...hhhhhhhhhhh.....eeeeeee.hhhhh.eeeee.......eeeeeee.....eeeeeeehhhhh.....hhhhhhhhhhh.......eeeeee..................hhhhhhhhhhhh....eee.hhhhh.....hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vvm B   1 MTSRDGYQWTPETGLTQGVPSLGVISPPTNI--------WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELG 486
                                    10        20        30|       40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480      
                                                         31       40
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VVM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VVM)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (AOFN_ASPNG | P46882)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AOFN_ASPNG | P46882: 2vvl 3zdn

(-) Related Entries Specified in the PDB File

2vvl X-RAY STRUCTURES OF DIRECTED EVOLUTION VARIANTS OF MONOAMINE OXIDASE FROM ASPERGILLUS NIGER.