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(-) Description

Title :  ACTIVATION OF NUCLEOPLASMIN, AN OLIGOMERIC HISTONE CHAPERONE, CHALLENGES ITS STABILITY
 
Authors :  S. G. Taneva, I. G. Munoz, G. Franco, J. Falces, I. Arregi, A. Muga, G. Montoya, M. A. Urbaneja, S. Banuelos
Date :  16 May 08  (Deposition) - 16 Dec 08  (Release) - 13 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,G,H,I,J,K
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  G,H,I,J,K  (1x)
Keywords :  Nucleoplasmin, Phosphorylation, Protein Stability, Oligomeric Protein, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. G. Taneva, I. G. Munoz, G. Franco, J. Falces, I. Arregi, A. Muga, G. Montoya, M. A. Urbaneja, S. Banuelos
Activation Of Nucleoplasmin, An Oligomeric Histone Chaperone, Challenges Its Stability.
Biochemistry V. 47 13897 2008
PubMed-ID: 19055325  |  Reference-DOI: 10.1021/BI800975R

(-) Compounds

Molecule 1 - NPM-A PROTEIN
    Chains: A, B, C, D, E, G, H, I, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET11B
    Fragment: CORE DOMAIN, RESIDUES 1-120
    Organism Common: AFRICAN CLAWED FROG
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355
    Other Details: RESIDUES 2,3,5,7,8,15,66,96 FROM THE WTCORE WERE MUTATED TO ASP
    Synonym: CORE NUCLEOPLASMIN WITH 8 MUTATIONS
 
Molecule 2 - NPM-A PROTEIN
    Chains: J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET11B
    Fragment: CORE DOMAIN, RESIDUES 1-120
    Organism Common: AFRICAN CLAWED FROG
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355
    Other Details: RESIDUES 2,3,5,7,8,15,66,96 FROM THE WTCORE WERE MUTATED TO ASP
    Synonym: CORE NUCLEOPLASMIN WITH 8 MUTATIONS

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEGHIJK
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      GHIJK

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2VTX)

(-) Sites  (0, 0)

(no "Site" information available for 2VTX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VTX)

(-) Cis Peptide Bonds  (22, 22)

Asymmetric Unit
No.Residues
1Pro A:98 -Pro A:99
2Gly A:109 -Pro A:110
3Pro B:98 -Pro B:99
4Gly B:109 -Pro B:110
5Pro C:98 -Pro C:99
6Gly C:109 -Pro C:110
7Pro D:98 -Pro D:99
8Gly D:109 -Pro D:110
9Pro E:98 -Pro E:99
10Gly E:109 -Pro E:110
11Pro G:98 -Pro G:99
12Gly G:109 -Pro G:110
13Pro H:98 -Pro H:99
14Gly H:109 -Pro H:110
15Pro I:98 -Pro I:99
16Gly I:109 -Pro I:110
17Pro J:98 -Pro J:99
18Gly J:109 -Pro J:110
19Cys K:41 -Glu K:42
20Val K:66 -Asp K:67
21Pro K:98 -Pro K:99
22Gly K:109 -Pro K:110

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VTX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VTX)

(-) Exons   (0, 0)

(no "Exon" information available for 2VTX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:103
                                    25        35        45        55        65        75        85        95       105       115   
           NUPL_XENLA    16 SLIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxa_ A: automate      d matches                                                                      SCOP domains
               CATH domains 2vtxA00 A:16-118  [      code=2.60.120.340, no name      defined]                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee..------....eeeeeeee........eeeeee.-----..eeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx A  16 DLIWGCELNEQNKTFEFKV------CEHQLALRTVCLGDKAKDEFHIVEIVD-----EKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    25        |-     |  45        55        65 |     |75        85        95       105       115   
                                             34     41                        67    73                                             


Chain A from PDB  Type:PROTEIN  Length:92
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:103
                                    25        35        45        55        65        75        85        95       105       115   
         Q6GQG6_XENLA    16 SLIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxa_ A: automate      d matches                                                                      SCOP domains
               CATH domains 2vtxA00 A:16-118  [      code=2.60.120.340, no name      defined]                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee..------....eeeeeeee........eeeeee.-----..eeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx A  16 DLIWGCELNEQNKTFEFKV------CEHQLALRTVCLGDKAKDEFHIVEIVD-----EKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    25        |-     |  45        55        65 |     |75        85        95       105       115   
                                             34     41                        67    73                                             


Chain B from PDB  Type:PROTEIN  Length:96
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:103
                                    26        36        46        56        66        76        86        96       106       116   
           NUPL_XENLA    17 LIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVA 119
               SCOP domains d2vtxb_ B: automat   ed matches                                                                         SCOP domains
               CATH domains 2vtxB00 B:17-119     [code=2.60.120.340, no name def    ined]                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeee..---......eeeeeeeee........eeeeeee.----.eeeeeeee......eee....ee...eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx B  17 LIWGCELNEQNKTFEFKV---EEKCEHQLALRTVCLGDKAKDEFHIVEIVDQ----EKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHVA 119
                                    26       | - |      46        56        66 |    | 76        86        96       106       116   
                                            34  38                            68   73                                              


Chain B from PDB  Type:PROTEIN  Length:96
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:103
                                    26        36        46        56        66        76        86        96       106       116   
         Q6GQG6_XENLA    17 LIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVA 119
               SCOP domains d2vtxb_ B: automat   ed matches                                                                         SCOP domains
               CATH domains 2vtxB00 B:17-119     [code=2.60.120.340, no name def    ined]                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeee..---......eeeeeeeee........eeeeeee.----.eeeeeeee......eee....ee...eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx B  17 LIWGCELNEQNKTFEFKV---EEKCEHQLALRTVCLGDKAKDEFHIVEIVDQ----EKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHVA 119
                                    26       | - |      46        56        66 |    | 76        86        96       106       116   
                                            34  38                            68   73                                              


Chain C from PDB  Type:PROTEIN  Length:89
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:103
                                    25        35        45        55        65        75        85        95       105       115   
           NUPL_XENLA    16 SLIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxc_ C: automate        d matches                                                                    SCOP domains
               CATH domains 2vtxC00 C:16-118  [        code=2.60.120.340, no nam      e defined]                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee..--------..eeeeeeee........eeeeee.------.eeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx C  16 DLIWGCELNEQNKTFEFKV--------HQLALRTVCLGDKAKDEFHIVEIVD------KSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    25        |-       |45        55        65 |      75        85        95       105       115   
                                             34       43                      67     74                                            


Chain C from PDB  Type:PROTEIN  Length:89
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:103
                                    25        35        45        55        65        75        85        95       105       115   
         Q6GQG6_XENLA    16 SLIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxc_ C: automate        d matches                                                                    SCOP domains
               CATH domains 2vtxC00 C:16-118  [        code=2.60.120.340, no nam      e defined]                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee..--------..eeeeeeee........eeeeee.------.eeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx C  16 DLIWGCELNEQNKTFEFKV--------HQLALRTVCLGDKAKDEFHIVEIVD------KSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    25        |-       |45        55        65 |      75        85        95       105       115   
                                             34       43                      67     74                                            


Chain D from PDB  Type:PROTEIN  Length:89
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:102
                                    26        36        46        56        66        76        86        96       106       116  
           NUPL_XENLA    17 LIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxd_ D: automat        ed matches                                                                   SCOP domains
               CATH domains 2vtxD00 D:17-118          [code=2.60.120.340, no nam     e defined]                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeee..--------..eeeeeeee........eeeeee..-----.eeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 2vtx D  17 LIWGCELNEQNKTFEFKV--------HQLALRTVCLGDKAKDEFHIVEIVDQ-----KSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    26       | -      | 46        56        66 |     |76        86        96       106       116  
                                            34       43                       68    74                                            


Chain D from PDB  Type:PROTEIN  Length:89
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:102
                                    26        36        46        56        66        76        86        96       106       116  
         Q6GQG6_XENLA    17 LIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxd_ D: automat        ed matches                                                                   SCOP domains
               CATH domains 2vtxD00 D:17-118          [code=2.60.120.340, no nam     e defined]                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeee..--------..eeeeeeee........eeeeee..-----.eeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 2vtx D  17 LIWGCELNEQNKTFEFKV--------HQLALRTVCLGDKAKDEFHIVEIVDQ-----KSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    26       | -      | 46        56        66 |     |76        86        96       106       116  
                                            34       43                       68    74                                            


Chain E from PDB  Type:PROTEIN  Length:91
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:103
                                    25        35        45        55        65        75        85        95       105       115   
           NUPL_XENLA    16 SLIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxe_ E: automate       d matches                                                                     SCOP domains
               CATH domains 2vtxE00 E:16-118  [       code=2.60.120.340, no name      defined]                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeee..-------..eeeeeeeee........eeeeee..-----.eeeeeee......eee....ee...eeeeeee....eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx E  16 DLIWGCELNEQNKTFEFKV-------EHQLALRTVCLGDKAKDEFHIVEIVDQ-----KSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    25        |-      | 45        55        65  |     75        85        95       105       115   
                                             34      42                        68    74                                            


Chain E from PDB  Type:PROTEIN  Length:91
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:103
                                    25        35        45        55        65        75        85        95       105       115   
         Q6GQG6_XENLA    16 SLIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxe_ E: automate       d matches                                                                     SCOP domains
               CATH domains 2vtxE00 E:16-118  [       code=2.60.120.340, no name      defined]                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeee..-------..eeeeeeeee........eeeeee..-----.eeeeeee......eee....ee...eeeeeee....eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx E  16 DLIWGCELNEQNKTFEFKV-------EHQLALRTVCLGDKAKDEFHIVEIVDQ-----KSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    25        |-      | 45        55        65  |     75        85        95       105       115   
                                             34      42                        68    74                                            


Chain G from PDB  Type:PROTEIN  Length:94
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:104
                                    25        35        45        55        65        75        85        95       105       115    
           NUPL_XENLA    16 SLIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVA 119
               SCOP domains d2vtxg_ G: automated       matches                                                                       SCOP domains
               CATH domains 2vtxG00 G:16-119  [c      ode=2.60.120.340, no name d    efined]                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee...------..eeeeeeeee........eeeeeee.----.eeeeeeee......eee....ee...eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2vtx G  16 DLIWGCELNEQNKTFEFKVE------EHQLALRTVCLGDKAKDEFHIVEIVDQ----EKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHVA 119
                                    25        35      | 45        55        65  |    |75        85        95       105       115    
                                              35     42                        68   73                                              


Chain G from PDB  Type:PROTEIN  Length:94
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:104
                                    25        35        45        55        65        75        85        95       105       115    
         Q6GQG6_XENLA    16 SLIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVA 119
               SCOP domains d2vtxg_ G: automated       matches                                                                       SCOP domains
               CATH domains 2vtxG00 G:16-119  [c      ode=2.60.120.340, no name d    efined]                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee...------..eeeeeeeee........eeeeeee.----.eeeeeeee......eee....ee...eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2vtx G  16 DLIWGCELNEQNKTFEFKVE------EHQLALRTVCLGDKAKDEFHIVEIVDQ----EKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHVA 119
                                    25        35      | 45        55        65  |    |75        85        95       105       115    
                                              35     42                        68   73                                              


Chain H from PDB  Type:PROTEIN  Length:95
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:102
                                    25        35        45        55        65        75        85        95       105       115  
           NUPL_XENLA    16 SLIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQH 117
               SCOP domains d2vtxh_ H: automate       d matches                                                                    SCOP domains
               CATH domains 2vtxH00 H:16-117  [       code=2.60.120.340, no name defined]                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....eeee..-------...eeeeeeee........eeeeeee......eeeeeeee......eee....ee...eeeeeee....eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 2vtx H  16 DLIWGCELNEQNKTFEFKV-------EHQLALRTVCLGDKAKDEFHIVEIVDQEEGAEKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQH 117
                                    25        |-      | 45        55        65        75        85        95       105       115  
                                             34      42                                                                           


Chain H from PDB  Type:PROTEIN  Length:95
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:102
                                    25        35        45        55        65        75        85        95       105       115  
         Q6GQG6_XENLA    16 SLIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQH 117
               SCOP domains d2vtxh_ H: automate       d matches                                                                    SCOP domains
               CATH domains 2vtxH00 H:16-117  [       code=2.60.120.340, no name defined]                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....eeee..-------...eeeeeeee........eeeeeee......eeeeeeee......eee....ee...eeeeeee....eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 2vtx H  16 DLIWGCELNEQNKTFEFKV-------EHQLALRTVCLGDKAKDEFHIVEIVDQEEGAEKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQH 117
                                    25        |-      | 45        55        65        75        85        95       105       115  
                                             34      42                                                                           


Chain I from PDB  Type:PROTEIN  Length:96
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:103
                                    25        35        45        55        65        75        85        95       105       115   
           NUPL_XENLA    16 SLIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxi_ I: automate       d matches                                                                     SCOP domains
               CATH domains 2vtxI00 I:16-118  [       code=2.60.120.340, no name defined]                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee..-------...eeeeeeee........eeeeeeeee..eeeeeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx I  16 DLIWGCELNEQNKTFEFKV-------EHQLALRTVCLGDKAKDEFHIVEIVDQEEGAEKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    25        |-      | 45        55        65        75        85        95       105       115   
                                             34      42                                                                            


Chain I from PDB  Type:PROTEIN  Length:96
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:103
                                    25        35        45        55        65        75        85        95       105       115   
         Q6GQG6_XENLA    16 SLIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxi_ I: automate       d matches                                                                     SCOP domains
               CATH domains 2vtxI00 I:16-118  [       code=2.60.120.340, no name defined]                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....eeee..-------...eeeeeeee........eeeeeeeee..eeeeeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx I  16 DLIWGCELNEQNKTFEFKV-------EHQLALRTVCLGDKAKDEFHIVEIVDQEEGAEKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    25        |-      | 45        55        65        75        85        95       105       115   
                                             34      42                                                                            


Chain J from PDB  Type:PROTEIN  Length:93
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:102
                                    26        36        46        56        66        76        86        96       106       116  
           NUPL_XENLA    17 LIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxj_ J: automa         ted matches                                                                  SCOP domains
               CATH domains 2vtxJ00 J:17-118           [code=2.60.120.340, no name defined]                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeee.---------..eeeeeeee........eeeeeeeee..eeeeeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 2vtx J  17 LIWGCELNEQNKTFEFK---------HQLALRTVCLGDKAKDEFHIVEIVDQEEGAEKVVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    26      |  -      | 46        56        66        76        86        96       106       116  
                                           33        43                                                                           


Chain J from PDB  Type:PROTEIN  Length:93
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:102
                                    26        36        46        56        66        76        86        96       106       116  
         Q6GQG6_XENLA    17 LIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 118
               SCOP domains d2vtxj_ J: automa         ted matches                                                                  SCOP domains
               CATH domains 2vtxJ00 J:17-118           [code=2.60.120.340, no name defined]                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeee.---------..eeeeeeee........eeeeeeeee..eeeeeeeeee......eee....ee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 2vtx J  17 LIWGCELNEQNKTFEFK---------HQLALRTVCLGDKAKDEFHIVEIVDQEEGAEKVVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHV 118
                                    26      |  -      | 46        56        66        76        86        96       106       116  
                                           33        43                                                                           


Chain K from PDB  Type:PROTEIN  Length:93
 aligned with NUPL_XENLA | P05221 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:103
                                    26        36        46        56        66        76        86        96       106       116   
           NUPL_XENLA    17 LIWGCELNEQDKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFNIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVA 119
               SCOP domains d2vtxk_ K: automat     ed matches                                                                       SCOP domains
               CATH domains 2vtxK00 K:17-119       [code=2.60.120.340, no name      defined]                                        CATH domains
           Pfam domains (1) Nucleoplasmin-2vtx     K01 K:17-119                                                                     Pfam domains (1)
           Pfam domains (2) Nucleoplasmin-2vtx     K02 K:17-119                                                                     Pfam domains (2)
           Pfam domains (3) Nucleoplasmin-2vtx     K03 K:17-119                                                                     Pfam domains (3)
           Pfam domains (4) Nucleoplasmin-2vtx     K04 K:17-119                                                                     Pfam domains (4)
           Pfam domains (5) Nucleoplasmin-2vtx     K05 K:17-119                                                                     Pfam domains (5)
           Pfam domains (6) Nucleoplasmin-2vtx     K06 K:17-119                                                                     Pfam domains (6)
           Pfam domains (7) Nucleoplasmin-2vtx     K07 K:17-119                                                                     Pfam domains (7)
           Pfam domains (8) Nucleoplasmin-2vtx     K08 K:17-119                                                                     Pfam domains (8)
           Pfam domains (9) Nucleoplasmin-2vtx     K09 K:17-119                                                                     Pfam domains (9)
          Pfam domains (10) Nucleoplasmin-2vtx     K10 K:17-119                                                                     Pfam domains (10)
         Sec.struct. author .eeeeee.....eeee..-----....eeeeeeeee........eeeeee.-----...eeeeee......eee....ee...eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx K  17 LIWGCELNEQNKTFEFKV-----KCEHQLALRTVCLGDKAKDEFHIVEIVD-----EKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHVA 119
                                    26       | -   |    46        56        66|     | 76        86        96       106       116   
                                            34    40                         67    73                                              


Chain K from PDB  Type:PROTEIN  Length:93
 aligned with Q6GQG6_XENLA | Q6GQG6 from UniProtKB/TrEMBL  Length:200

    Alignment length:103
                                    26        36        46        56        66        76        86        96       106       116   
         Q6GQG6_XENLA    17 LIWGCELNEQNKTFEFKVEDDEEKCEHQLALRTVCLGDKAKDEFHIVEIVTQEEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVA 119
               SCOP domains d2vtxk_ K: automat     ed matches                                                                       SCOP domains
               CATH domains 2vtxK00 K:17-119       [code=2.60.120.340, no name      defined]                                        CATH domains
           Pfam domains (1) Nucleoplasmin-2vtx     K01 K:17-119                                                                     Pfam domains (1)
           Pfam domains (2) Nucleoplasmin-2vtx     K02 K:17-119                                                                     Pfam domains (2)
           Pfam domains (3) Nucleoplasmin-2vtx     K03 K:17-119                                                                     Pfam domains (3)
           Pfam domains (4) Nucleoplasmin-2vtx     K04 K:17-119                                                                     Pfam domains (4)
           Pfam domains (5) Nucleoplasmin-2vtx     K05 K:17-119                                                                     Pfam domains (5)
           Pfam domains (6) Nucleoplasmin-2vtx     K06 K:17-119                                                                     Pfam domains (6)
           Pfam domains (7) Nucleoplasmin-2vtx     K07 K:17-119                                                                     Pfam domains (7)
           Pfam domains (8) Nucleoplasmin-2vtx     K08 K:17-119                                                                     Pfam domains (8)
           Pfam domains (9) Nucleoplasmin-2vtx     K09 K:17-119                                                                     Pfam domains (9)
          Pfam domains (10) Nucleoplasmin-2vtx     K10 K:17-119                                                                     Pfam domains (10)
         Sec.struct. author .eeeeee.....eeee..-----....eeeeeeeee........eeeeee.-----...eeeeee......eee....ee...eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2vtx K  17 LIWGCELNEQNKTFEFKV-----KCEHQLALRTVCLGDKAKDEFHIVEIVD-----EKSVPIATLKPSILPMATMVGIELDPPVTFRLKAGSGPLYISGQHVA 119
                                    26       | -   |    46        56        66|     | 76        86        96       106       116   
                                            34    40                         67    73
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 10)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Jelly Rolls (1293)
(-)
Homologous Superfamily: [code=2.60.120.340, no name defined] (6)
(-)
African clawed frog (Xenopus laevis) (4)
1a2vtxB00B:17-119
1b2vtxI00I:16-118
1c2vtxH00H:16-117
1d2vtxG00G:16-119
1e2vtxK00K:17-119
1f2vtxA00A:16-118
1g2vtxE00E:16-118
1h2vtxC00C:16-118
1i2vtxD00D:17-118
1j2vtxJ00J:17-118

(-) Pfam Domains  (1, 10)

Asymmetric Unit
(-)
Clan: no clan defined [family: Nucleoplasmin] (6)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,G,H,I,J,K   (NUPL_XENLA | P05221)
biological process
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0007338    single fertilization    The union of male and female gametes to form a zygote.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A,B,C,D,E,G,H,I,J,K   (Q6GQG6_XENLA | Q6GQG6)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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    Cys K:41 - Glu K:42   [ RasMol ]  
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  2vtx
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  NUPL_XENLA | P05221
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NUPL_XENLA | P05221: 1ee5 1ejy 1k5j 3ul1 4bpl

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2VTX)